Gene Ontology annotation through association of InterPro records with GO terms
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InterPro2GO mapping of the complex I 49 kDa / NuoD domain signature, the source of the electronic NADH dehydrogenase, complex I membership and electron-transport annotations for NDUFS2. Domain-based mapping is well suited to this deeply conserved core subunit.
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
Annotation inferences using phylogenetic trees
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Source of the PANTHER phylogenetically-inferred (IBA) annotations for NDUFS2, propagating NADH dehydrogenase (ubiquinone) activity, complex I membership, mitochondrial inner-membrane location and NADH-to-ubiquinone electron transport across the conserved NuoD/49 kDa clade.
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
Automatic assignment of GO terms using logical inference, based on on inter-ontology links
Combined Automated Annotation using Multiple IEA Methods
Human complex I defects can be resolved by monoclonal antibody analysis into distinct subunit assembly patterns.
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Monoclonal antibodies against complex I subunits were used to profile assembly patterns in patients, including two carrying NDUFS2 mutations.
"Four patients had undefined Complex I defects, whereas the other patients had defects in NDUFV1, NDUFS2 (two patients), NDUFS4 (two patients), NDUFS7, and NDUFS8."
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Subunit-level antibody profiling combined with sucrose gradients distinguishes catalytic from assembly defects, the distinction that later proved central to interpreting NDUFS2 mutations.
"helps distinguish catalytic versus assembly defects and further distinguishes between mutations in different subunits"
The subunit composition of the human NADH dehydrogenase obtained by rapid one-step immunopurification.
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Immunopurification resolved and identified the human homologues of 42 complex I polypeptides by mass spectrometry. The cached abstract does not name individual subunits; NDUFS2's presence among them is what the GOA IDA annotation from this paper records.
"we can resolve and identify the human homologues of 42 polypeptides detected so far in the more extensively studied beef heart complex I"
Differences in assembly or stability of complex I and other mitochondrial OXPHOS complexes in inherited complex I deficiency.
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Blue native electrophoresis of fibroblasts from complex I-deficient patients showed that mutations in nuclear-encoded subunits including NDUFS2 reduce assembled complex I, indicating compromised assembly or stability.
"Our results show an important decrease in the levels of intact complex I in patients harboring mutations in nuclear-encoded complex I subunits, indicating that complex I assembly and/or stability is compromised."
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NDUFS2 mutations also destabilise complex III, evidence that the core subunit contributes to supercomplex integrity beyond complex I itself.
"Mutations in complex I genes can also affect the stability of other mitochondrial complexes, with a specific decrease of fully-assembled complex III in patients with mutations in NDUFS2 and NDUFS4."
Structural organization of mitochondrial human complex I: role of the ND4 and ND5 mitochondria-encoded subunits and interaction with prohibitin.
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An immunopurified subcomplex containing the 23, 30 and 49 kDa (NDUFS2) subunits also contained prohibitin, the first report of a prohibitin-complex I subunit association.
"One of these, containing the 23, 30 and 49 kDa subunits, also contained prohibitin."
Identification of mitochondrial complex I assembly intermediates by tracing tagged NDUFS3 demonstrates the entry point of mitochondrial subunits.
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Complex I assembles stepwise through six discrete NDUFS3-GFP-containing subcomplexes. The cached abstract tracks the NDUFS3 tag rather than NDUFS2; the NDUFS2/NDUFS3 intermediate being the nucleus of this pathway rests on the full text and on the Reactome assembly steps cited elsewhere in this review.
"Upon induction, six distinct NDUFS3-GFP-containing subcomplexes gradually appeared on a blue native Western blot also observed in wild type HEK293 mitochondria."
Mutations in NDUFAF3 (C3ORF60), encoding an NDUFAF4 (C6ORF66)-interacting complex I assembly protein, cause fatal neonatal mitochondrial disease.
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NDUFAF3 was established as a genuine complex I assembly factor that interacts with complex I subunits, the assembly context in which the NDUFS2-containing early intermediate forms.
"We found that NDUFAF3 is a genuine mitochondrial complex I assembly protein that interacts with complex I subunits."
LC-MS/MS as an alternative for SDS-PAGE in blue native analysis of protein complexes.
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Protein correlation profiling across blue native gel slices used the NDUFS2 abundance profile to identify candidate complex I biogenesis factors, an approach that reports NDUFS2 co-migration with assembly intermediates.
"Using protein correlation profiling with a profile for subunits NDUFS2, 3, 7 and 8 we identified multiple proteins possibly involved in the biogenesis of complex I, including the recently implicated chaperone C6ORF66 and a novel candidate, C3ORF60."
Proteomic analysis of increased Parkin expression and its interactants provides evidence for a role in modulation of mitochondrial function.
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NDUFS2 was recovered among tandem-affinity-purified interactants of the E3 ubiquitin ligase Parkin, a large-scale interaction data point rather than evidence for a distinct NDUFS2 function.
"Tandem affinity purification/MS revealed 14 potential interactants of Parkin; CKB, DBT, HSPD1, HSPA9, LRPPRC, NDUFS2, PRDX6, SLC25A5, TPI1, UCHL1, UQCRC1, VCL, YWHAZ, YWHAE."
MidA is a putative methyltransferase that is required for mitochondrial complex I function.
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Yeast two-hybrid and pull-down experiments showed that Dictyostelium and human MidA interact with NDUFS2, and MidA loss reduces assembled complex I.
"Using yeast two-hybrid screening and pull-down experiments, we showed that both proteins interact with the mitochondrial complex I subunit NDUFS2."
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Depletion of the NDUFS2-interacting MidA protein causes a specific complex I defect, implicating it in complex I assembly or stability.
"Consistent with this, Dictyostelium cells lacking MidA showed a specific defect in complex I activity, and knockdown of human MidA in HEK293T cells resulted in reduced levels of assembled complex I."
A catalytic defect in mitochondrial respiratory chain complex I due to a mutation in NDUFS2 in a patient with Leigh syndrome.
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The homozygous NDUFS2 Asp446Asn mutation leaves complex I amounts normal while strongly reducing activity, direct evidence that NDUFS2 contributes catalytically rather than only structurally.
"Complex I amounts in the patient carrying the Asp446Asn mutation were normal, while the complex I activity was strongly reduced, showing that the NDUFS2 mutation affects complex I enzymatic function."
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The mutated residue sits near the coenzyme Q binding pocket, placing NDUFS2 at the quinone reduction site of complex I.
"A 3-D model of the catalytic core of complex I showed that the mutated amino acid residue resides near the coenzyme Q binding pocket."
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The authors propose that the defect lies in coenzyme Q reduction or in coupling that reduction to the conformational changes driving proton pumping.
"We propose that the mutation interferes with the reduction of coenzyme Q or with the coupling of coenzyme Q reduction with the conformational changes involved in proton pumping of complex I."
NDUFAF7 methylates arginine 85 in the NDUFS2 subunit of human complex I.
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NDUFAF7 symmetrically dimethylates Arg-85 of NDUFS2, a specific post-translational modification of this subunit occurring early in complex I assembly.
"it is a protein methylase that symmetrically dimethylates the ω-N(G),N(G') atoms of residue Arg-85 in the NDUFS2 subunit of complex I"
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Arg-85 methylation of NDUFS2 stabilises the ~400 kDa subcomplex that nucleates the peripheral arm and its junction with the membrane arm.
"This methylation step occurs early in the assembly of complex I and probably stabilizes a 400-kDa subcomplex that forms the initial nucleus of the peripheral arm and its juncture with the membrane arm."
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The extrinsic arm of complex I holds the NADH and FMN sites and the Fe-S wire terminating at the ubiquinone site located at the junction between the arms, where NDUFS2 acts.
"The extrinsic arm contains binding sites for NADH and the primary electron acceptor FMN, and it provides a scaffold for seven iron-sulfur clusters that form an electron pathway linking FMN to the terminal electron acceptor, ubiquinone, which is bound in the region of the junction between the arms."
TIMMDC1/C3orf1 functions as a membrane-embedded mitochondrial complex I assembly factor through association with the MCIA complex.
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Interaction proteomics around 15 core complex I subunits and assembly factors, including NDUFS2, defined the network in which TIMMDC1 was identified as a membrane-embedded assembly factor.
"We employed interaction proteomics to interrogate the molecular associations of 15 core subunits and assembly factors previously linked to human CI deficiency, resulting in a network of 101 proteins and 335 interactions (edges)."
Cyclin B1/Cdk1 coordinates mitochondrial respiration for cell-cycle G2/M progression.
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A mitochondrial pool of cyclin B1/Cdk1 phosphorylates complex I subunits and enhances complex I activity; this describes regulation of NDUFS2 by another kinase rather than a cell-cycle function of NDUFS2 itself.
"Cyclin B1/Cdk1-mediated CI phosphorylation enhances CI activity, whereas deficiency of such phosphorylation in each of the relevant CI subunits results in impairment of CI function."
Mitochondrial Protein Interaction Mapping Identifies Regulators of Respiratory Chain Function.
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Affinity-enrichment mass spectrometry map of mitochondrial protein interactions; an NDUFS2 association here is a high-throughput interaction data point in a survey aimed at uncharacterised mitochondrial proteins.
"To reveal functions for these proteins (termed MXPs), we assessed condition-specific protein-protein interactions for 50 select MXPs using affinity enrichment mass spectrometry."
Compound heterozygosity for severe and hypomorphic NDUFS2 mutations cause non-syndromic LHON-like optic neuropathy.
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Compound heterozygous NDUFS2 mutations (p.Tyr53Cys; p.Tyr308Cys) cause non-syndromic LHON-like optic neuropathy, extending the NDUFS2 disease spectrum beyond Leigh syndrome.
"We identified compound heterozygote NDUFS2 disease-causing mutations (p.Tyr53Cys; p.Tyr308Cys)."
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Modelling the mutations in the Yarrowia lipolytica orthologue NUCM abolished complex I or reduced NADH-ubiquinone oxidoreductase activity, confirming pathogenicity in a tractable system.
"In the yeast Y. lipolytica ortholog NUCM, the mutations resulted in absence of complex I and moderate reduction in nicotinamide adenine dinucleotide-ubiquinone oxidoreductase activity, respectively."
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Mutation severity correlates with disease severity, supporting a dose-dependent relationship between residual NDUFS2 function and phenotype.
"Our results are consistent with the view that compound heterozygosity for severe and hypomorphic NDUFS2 mutations can cause non-syndromic HON."
Architecture of the human interactome defines protein communities and disease networks.
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BioPlex 2.0 affinity-purification interactome; NDUFS2 entries derived from it are systematic co-complex data points that corroborate complex I membership but do not define a molecular function.
"Here we present BioPlex 2.0 (Biophysical Interactions of ORFeome-derived complexes), which uses robust affinity purification-mass spectrometry methodology to elucidate protein interaction networks and co-complexes nucleated by more than 25% of protein-coding genes from the human genome"
Architecture of Human Mitochondrial Respiratory Megacomplex I(2)III(2)IV(2).
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Cryo-EM of the human respiratory megacomplex assigned individual complex I subunits, placing NDUFS2 within complex I in a higher-order supercomplex.
"The structure not only reveals the precise assignment of individual subunits of human CI and CIII, but also enables future in-depth analysis of the electron transport chain as a whole."
Assembly of mammalian oxidative phosphorylation complexes I-V and supercomplexes.
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Review distinguishing the catalytic core proteins of the OXPHOS complexes, which include NDUFS2, from the supernumerary subunits that act in assembly and stability.
"The human enzymes comprise core proteins, performing the catalytic activities, and a large number of 'supernumerary' subunits that play essential roles in assembly, regulation and stability."
Ndufs2, a Core Subunit of Mitochondrial Complex I, Is Essential for Acute Oxygen-Sensing and Hypoxic Pulmonary Vasoconstriction.
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Ndufs2, which forms the rotenone binding site of complex I, was tested directly as the molecular oxygen sensor underlying hypoxic pulmonary vasoconstriction.
"Complex I's rotenone binding site, in pulmonary vascular oxygen-sensing."
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Ndufs2 knockdown in pulmonary artery smooth muscle cells prevented the hypoxic calcium rise and phenocopied chronic hypoxia, whereas knockdown of other candidate sensors did not.
"Knocking down another Fe-S center within Complex I ... or other mitochondrial subunits proposed as putative oxygen sensors ... had no effect on hypoxic increases in [Ca2+]i."
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The authors conclude that Ndufs2 is essential for oxygen sensing and hypoxic pulmonary vasoconstriction, a tissue-specific role layered on the core catalytic function; note that this evidence is from rat, not human, cells.
"Ndufs2 is essential for oxygen-sensing and HPV."
OSMR controls glioma stem cell respiration and confers resistance of glioblastoma to ionizing radiation.
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A mitochondrial pool of the cytokine receptor OSMR interacts with NDUFS1/NDUFS2 of complex I and promotes mitochondrial respiration in brain tumour stem cells.
"OSMR interacts with NADH ubiquinone oxidoreductase 1/2 (NDUFS1/2) of complex I and promotes mitochondrial respiration."
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The radioresistance phenotype described here is a property of OSMR, not of NDUFS2; NDUFS2 features as the complex I interaction partner through which OSMR acts.
"Here, we report our discovery of a mitochondrial OSMR that confers resistance to IR via regulation of oxidative phosphorylation, independent of its role in cell proliferation."
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
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BioPlex 3.0 proteome-scale interaction networks across two cell lines; NDUFS2 entries are systematic affinity-purification data points supporting complex membership rather than a specific molecular function.
"The first, BioPlex 3.0, results from affinity purification of 10,128 human proteins-half the proteome-in 293T cells and includes 118,162 interactions among 14,586 proteins."
Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context.
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NDUFS2 is a member of the stringently defined human mitochondrial high-confidence proteome (MitoCoP), corroborating mitochondrial localization.
"We classified >8,000 proteins in mitochondrial preparations of human cells and defined a mitochondrial high-confidence proteome of >1,100 proteins (MitoCoP)."
Mapping to 1q23 of the human gene (NDUFS2) encoding the 49-kDa subunit of the mitochondrial respiratory Complex I and immunodetection of the mature protein in mitochondria.
cDNA sequence and chromosomal localization of the remaining three human nuclear encoded iron sulphur protein (IP) subunits of complex I: the human IP fraction is completed.
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The NDUFS2 cDNA encoding the 49 kDa iron-sulfur protein (IP) fraction subunit was cloned, completing the human complex I IP fraction.
"We cloned the cDNA of three remaining human NADH:ubiquinone oxidoreductase subunits of this IP fraction: the NDUFS2 (49 kDa), NDUFS3 (30 kDa), and NDUFS6 (13 kDa) subunits."
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NDUFS2 belongs to the iron-sulfur protein subfraction of complex I, which carries the conserved prosthetic groups, and its sequence is 96% identical to the bovine protein.
"The IP subfraction is hypothesized to be significant, since it contains important prosthetic groups highly conserved among species."
cDNA of eight nuclear encoded subunits of NADH:ubiquinone oxidoreductase: human complex I cDNA characterization completed.
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Defines the reaction catalysed by the complex to which NDUFS2 contributes - electron transfer from NADH to ubiquinone coupled to proton translocation.
"Its main function is the transport of electrons from NADH to ubiquinone, which is accompanied by translocation of protons from the mitochondrial matrix to the intermembrane space."
Complex I oxidises NADH to NAD+, reduces CoQ to CoQH2
NUBPL transfers 4Fe-4S to Complex I subunits
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NUBPL-mediated transfer of 4Fe-4S clusters into complex I subunits; Reactome names NDUFS2 among the matrix-located subunits receiving an iron-sulfur cluster. Reported as stated by Reactome only - the eight clusters of mammalian complex I are accounted for by NDUFV1, NDUFV2, NDUFS1, NDUFS7 and NDUFS8, so this subunit list should not be read as evidence that NDUFS2 carries a cluster in the electron-transfer wire.
Intermediate 1 binds HP subcomplex to form Intermediate 2
Peripheral arm subunits bind the 815kDa complex to form a 980kDa complex
Intermediate 2 binds MT-ND1:NDUFAF5:NDUFAF6 to form a 315kDa subcomplex
The MCIA complex, NDUFAF2-7 all dissociate from the 980kDa complex, resulting in Complex I
ND4, ND5 bind the 550kDa complex to form the 815kDa complex
The 315kDa subcomplex binds the 370kDa subcomplex to form the 550kDa complex
IP subcomplex binds NDUFAF3, NDUFAF4, TIMMDC1 to form Intermediate 1
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Reactome states that complex I assembly begins with a 315 kDa subcomplex centred on NDUFS2 and NDUFS3, that NDUFS2 is bound by the assembly factor NDUFAF7, and that NDUFS2 defects cause mitochondrial complex I deficiency - direct pathway support for the core, nucleating role of this subunit.
NDUF subunits bind to form the IP subcomplex