Gene Ontology annotation through association of InterPro records with GO terms.
TreeGrafter-generated GO annotations
Combined Automated Annotation using Multiple IEA Methods.
Transcriptional organization and regulation of the Pseudomonas putida K1 type VI secretion system gene cluster.
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"The three genes were significantly upregulated in the retS mutant, with fold-changes >3 for hcp1 and >1.5 for tssB1 and PP3104"
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"This effect was not observed in the stationary phase (Fig. 4b), which suggests that repression of the K1-T6SS by RetS occurs mainly during exponential growth."
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"This indicates that GacS is a positive regulator of K1-T6SS expression, and this activity is repressed only by RetS in the exponential phase of growth."
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.
The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis.
UniProt entry Q88DK1
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"RecName: Full=histidine kinase"
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"[923 aa membrane histidine kinase with] DOMAIN 404..624 Histidine kinase [...] DOMAIN 642..764 Response regulatory [...] DOMAIN 791..910 Response regulatory [, i.e. a HisKA kinase module plus two receiver domains, with multiple TRANSMEM helices.]"
Research notes on retS function
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"PP_4824 is a RetS-family hybrid sensor kinase with 7TMR-DISM, HisKA, and two receiver domains."
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"Direct KT2440 literature supports repression of K1-T6SS expression by RetS during exponential growth."
Falcon deep research report on retS (PP_4824 / Q88DK1) in Pseudomonas putida KT2440
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"RetS represses transcription of the K1 type VI secretion system"
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"PP_4824 functions primarily as an **upstream negative regulator of K1‑T6SS transcription**, acting most strongly under conditions where KT2440 would otherwise allocate resources to growth"
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"K1‑T6SS expression is **positively regulated by GacS–GacA** and **repressed by RetS**, which inhibits this TCS"
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"RetS is described as an “orphan” or “hybrid” sensor kinase that modulates the GacS/GacA pathway in *Pseudomonas*, often functioning as an upstream antagonist of the Gac/Rsm cascade."
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"RetS-family proteins are described as **inner-membrane sensor kinases** with **periplasmic sensory modules** and **cytoplasmic kinase/receiver modules**"
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"**cytosolic histidine kinase (HisKA-type) region** plus **tandem receiver (REC/RR) domains**"
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"negatively regulates the GacS–GacA-controlled transcriptional program for the K1 type VI secretion system"
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"RetS inhibits GacS signaling via **direct interactions between the HK regions**"