Affinage mechanistic annotation for ARMCX1 (human) Affinage Affinage (Claude Sonnet reading pass + Opus synthesis pass) 12 citations

Affinage mechanistic annotation for ARMCX1 (human)

Current model (mechanistic narrative)

ARMCX1 (ALEX1) is a mammalian-specific armadillo repeat protein with two functional dimensions: regulation of mitochondrial dynamics in neurons and tumor suppression in epithelial cancers [PMID:28009275, PMID:11162520]. In adult neurons it localizes to mitochondria and enhances mitochondrial transport, and this localization is required for its pro-survival and pro-regenerative effects following axonal injury PMID:28009275; after traumatic brain injury it preserves mitochondrial function, neuronal viability, and axonal integrity through a Miro1-dependent transport pathway, and its protein levels are suppressed post-injury by miR-223-3p [PMID:37454781, PMID:38492796]. As a tumor suppressor, ARMCX1 acts as a substrate-recruiting adaptor for the ubiquitin-proteasome system, bridging the E3 ligase FBXW7 to drive degradation of c-Myc and the E3 ligase TRIM21 to drive degradation of β-catenin, thereby inactivating cell-cycle and EMT programs [PMID:39285446, PMID:41533266]; it additionally restrains tumor-cell behavior by suppressing thrombin/PAR-1-induced RhoA/Rac1 activation and by acting upstream of JAK1/STAT3 signaling [PMID:28315004, PMID:30907988]. Its expression is activated transcriptionally by CREB and Wnt/β-catenin signaling via a promoter CRE element, and it is frequently silenced by promoter hypermethylation across carcinomas [PMID:20398052, PMID:22494058]. Conditional knockout indicates ARMCX1 is dispensable for baseline retinal and optic nerve homeostasis, consistent with an injury- and stress-responsive role PMID:39139090.

Affinage mechanism profile (Affinage's own GO/Reactome grounding)

Dated findings (citation-anchored)

Year Confidence Finding PMIDs Journal
2016 High Armcx1 is a mammalian-specific, mitochondria-localized protein that enhances mitochondrial transport in adult retinal ganglion cells (RGCs); its pro-survival and pro-regeneration effects after axotomy depend on its mitochondrial localization, as shown by overexpression and knockdown experiments in a mouse optic nerve injury model. PMID:28009275 Neuron
2001 Medium ALEX1/ARMCX1 encodes a novel human armadillo repeat protein (453 amino acids) with two ARM repeats, localizes to chromosome Xq21.33-q22.2, and shows homology to ALEX2 and ALEX3; its mRNA expression is lost or significantly reduced in lung, prostate, colon, pancreas, and ovarian carcinomas compared to normal tissues. PMID:11162520 Biochemical and biophysical research communications
2010 Medium ALEX1/ARMCX1 transcription is regulated by a cyclic AMP response element (CRE) and an E-box in its promoter; CREB directly activates ALEX1 promoter activity, and Wnt/β-catenin signaling upregulates ALEX1 expression in a CRE-dependent manner. PMID:20398052 Cancer science
2012 Medium ALEX1/ARMCX1 overexpression suppresses anchorage-dependent and -independent colony formation in human colorectal carcinoma cell lines (HCT116); the ALEX1 gene promoter is highly methylated in HCT116 and SW480 cells, silencing its expression. PMID:22494058 Cancer science
2017 Medium ALEX1/ARMCX1 inhibits gastric cancer metastasis by suppressing thrombin-induced (PAR-1-mediated) activation of Rho GTPases; overexpression disrupts cytoskeletal structure and reduces RhoA/Rac1 activity, while ALEX1 promoter is highly methylated in GC cells and tissues. PMID:28315004 Journal of gastroenterology
2015 Low ALEX1/ARMCX1 overexpression in breast cancer cells activates the intrinsic apoptosis pathway by upregulating Bax, cytosolic cytochrome c, active caspase-9, and active caspase-3 while downregulating Bcl-2 and mitochondrial cytochrome c; ALEX1 depletion has the opposite effect. PMID:25921134 Asian Pacific journal of cancer prevention
2019 Medium miR-106b directly targets ALEX1/ARMCX1 in gastric cancer cells; ALEX1 upregulation rescues apoptosis induced by miR-106b inhibition and promotes phosphorylation of JAK1 and STAT3, indicating ALEX1 acts upstream of the JAK1/STAT3 signaling pathway. PMID:30907988 Cellular physiology and biochemistry
2023 Medium After traumatic brain injury (TBI), Armcx1 expression decreases in neurons while miR-223-3p increases; miR-223-3p directly targets and reduces Armcx1 protein levels; Armcx1 overexpression protects against TBI-induced mitochondrial dysfunction, neuronal cell death, and axonal injury, while knockdown exacerbates these effects. PMID:37454781 Neurobiology of disease
2024 Medium Armcx1 regulates neurological recovery after TBI through a mitochondrial transport pathway involving Miro1; Armcx1 inhibition reduces Miro1 expression and leads to impaired mitochondrial transport, abnormal mitochondrial morphology, reduced ATP levels, and increased neuronal apoptosis. PMID:38492796 Neuroscience
2024 Medium ARMCX1 inhibits lung adenocarcinoma by recruiting the E3 ubiquitin ligase FBXW7 to mediate ubiquitinated degradation of c-Myc, thereby suppressing c-Myc nuclear accumulation and inactivating cell cycle and EMT signaling. PMID:39285446 Biology direct
2026 Medium ARMCX1 promotes ubiquitination and proteasomal degradation of β-catenin in nasopharyngeal carcinoma by recruiting the E3 ubiquitin ligase TRIM21, thereby suppressing cell cycle progression and epithelial-mesenchymal transition; β-catenin overexpression rescues the tumor-suppressive effects of ARMCX1. PMID:41533266 Cellular oncology
2024 Medium Conditional knockout of Armcx1 globally and in retinal neurons (using β-actin-Cre and Six3-Cre) shows no evidence of aberrant retinal or optic nerve development or RGC degeneration up to 15 months under normal physiological conditions, indicating Armcx1 is dispensable for baseline retinal homeostasis. PMID:39139090 Genesis

Citations