Electronic Gene Ontology annotations created by transferring manual GO annotations between related proteins based on shared sequence features
Automatic Gene Ontology annotation based on Rhea mapping
Combined Automated Annotation using Multiple IEA Methods
Identification and characterization of a bacterial glycerol-1-phosphate dehydrogenase: Ni(2+)-dependent AraM from Bacillus subtilis.
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Recombinant AraM is a homodimer that reversibly reduces glycerone phosphate to sn-glycerol 1-phosphate with NADH, the first G1P dehydrogenase identified in bacteria, with a catalytic efficiency comparable to its archaeal homologues but dependent on Ni2+ rather than Zn2+.
"the purified protein forms a homodimer that reversibly reduces dihydroxyacetone"
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The article abstract proposes a lipid-precursor role using enzymology and an araM knockout, without specifying the knockout result. Independent access to the author dissertation resolves a lipoteichoic-acid ELISA and precursor-fed lipid experiments, neither establishing endogenous EgsA-to-PcrB flux.
"and the analysis of an araM knockout mutant, we propose that AraM generates G1P"
The Bacillus subtilis L-arabinose (ara) operon: nucleotide sequence, genetic organization and expression.
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araM is one of nine cistrons of the ara operon; the operon is induced by L-arabinose and repressed by glucose, and araM together with araL, araN, araP, araQ and abfA is not required for L-arabinose utilisation.
"araL, araM, araN, araP, araQ and abfA are not essential for"
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At the time of operon characterisation no function was known for araM.
"The functions of araL and araM are unknown."
Mode of action of AraR, the key regulator of L-arabinose metabolism in Bacillus subtilis.
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AraR is the repressor of the araABDLMNPQ-abfA operon that contains egsA, binding cooperatively to two in-phase operators in its promoter; L-arabinose inhibits that binding and so induces the operon.
"negative regulator involved in L-arabinose-inducible"
Functional assignment of an enzyme that catalyzes the synthesis of an archaea-type ether lipid in bacteria.
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PcrB, the bacterial homologue of the archaeal geranylgeranylglyceryl phosphate synthase, makes heptaprenylglyceryl phosphate in Bacillales, and the product is dephosphorylated and acetylated in vivo. This establishes the step that consumes sn-glycerol 1-phosphate.
"heptaprenylglyceryl phosphate in bacillales. The product becomes"
Identification and Characterization of Heptaprenylglyceryl Phosphate Processing Enzymes in Bacillus subtilis.
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Glycerol-1-phosphate dehydrogenase and heptaprenylglyceryl phosphate synthase are described as the key enzymes of bacterial ether lipid synthesis; downstream, the heptaprenylglyceryl phosphate is dephosphorylated by an unassigned phosphatase and acetylated by YvoF.
"glycerol-1-phosphate dehydrogenase and heptaprenylglyceryl phosphate synthase,"
Chiral analysis of glycerol phosphates - can bacteria biosynthesize heterochiral phospholipid membranes?
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Both glycerophosphate enantiomers are present in B. subtilis, at a G3P to G1P ratio of about 4 to 1, and both appear in the glycerol backbone of some phosphatidylglycerol species, so glycerophospholipids with a glycerol-1-phosphate backbone exist in this organism.
"the presence of both enantiomers in the glycerol backbone of"
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The four strains surveyed, chosen because they encode both glycerophosphate dehydrogenases, all produce both enantiomers.
"that the bacteria examined here produce both enantiomer glycerol phosphates."
Lipoprotein N-terminal modification in Bacillus: a new paradigm for extracellular acetylation and species-dependent Toll-like receptor 2 immunomodulation.
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A transposon screen plus targeted deletions identified pcrB, yvoF and ypjA as strictly required for lipoprotein N-acetylation; egsA was not among the genes reported. This is a non-saturating screen in rich medium, so it is not evidence against EgsA supplying the G1P, but it leaves the source open.
"Only pcrB, yvoF, and ypjA fully suppressed TLR2 activity, indicating these genes are strictly required for Ac-LP synthesis."
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The downstream fate of the G1P-derived lipid is defined. PcrB condenses sn-glycerol 1-phosphate with heptaprenyl pyrophosphate, and the processed, acetylated product serves as the acetyl donor for lipoprotein N-acetylation.
"PcrB condenses sn-glycerol 1-phosphate (G1P) with heptaprenyl pyrophosphate (HepPP)"
Bacterial lipid synthesizing enzymes PlsY and PlsC utilize both stereo-forms of glycerol-phosphate.
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The authors cite earlier engineered E. coli synthesis of correctly configured archaeal lipids without AraM as evidence for an unidentified G1P source in that host; their own experiments concern PlsY and PlsC stereospecificity, not a newly identified G1P pathway.
"other mechanism(s) of G1P biosynthesis must exist in E. coli and possibly other bacteria, as archaeal lipids with the correct chiral structure could be produced even in the absence of AraM"
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G1P dehydrogenase was thought to be exclusive to Archaea; the bacterial equivalent AraM occurs in some bacteria, notably Bacillus, but is not ubiquitous.
"previously thought to be exclusive to Archaea"
Prokaryotes bridging the lipid divide.
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The review argues that the lipid divide between archaeal G1P ether lipids and bacterial G3P ester lipids is crossable, with bacterial G1P dehydrogenase among the exceptions that cross it.
"the lipid divide can be"
UniProtKB P94527 (G1PDH_BACSU) flat file
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Curated experimental statements support reversible stereospecific G1P dehydrogenase activity, preferred NADH, nickel dependence, homodimerization and kinetic constants. Those constants do not by themselves establish cellular flux direction.
"Catalyzes the NAD(P)H-dependent reduction of"
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Family placement in the glycerol-1-phosphate dehydrogenase family, consistent with the measured activity and with the InterPro and HAMAP signatures the GOA rows cite.
"Belongs to the glycerol-1-phosphate dehydrogenase family."
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Transcription of the gene is repressed by glucose and by AraR binding to the operon promoter, with L-arabinose acting as the inducer; this is curated from experiment.
"Transcription is repressed by glucose and by the binding of"
Guldan 2010 author dissertation: scoped EgsA kinetics and precursor-feeding evidence
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Recombinant enzyme kinetics establish preferred NADH and measurable lower-efficiency NADPH activity; the disruption and precursor-feeding experiments leave endogenous lipid flux unresolved.
"External G1P bypasses its endogenous formation."