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Yeast Ire1 is an ER-resident type I transmembrane stress sensor with a cytosolic
Ser/Thr kinase domain and an endoribonuclease (RNase) domain that initiates the
unfolded protein response by splicing HAC1 mRNA; HAC1 is the canonical RNA substrate
in S. cerevisiae (whereas metazoan IRE1 splices XBP1).
"The UniProt accession **P32361** corresponds to **budding yeast (*Saccharomyces cerevisiae* S288c) Ire1/Ern1 (YHR079C)**, an **ER-resident single-pass (type I) transmembrane stress sensor** with a **cytosolic serine/threonine kinase domain and an endoribonuclease (RNase) domain** that initiates the yeast unfolded protein response (UPR) by **splicing HAC1 mRNA**."
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Ire1's RNase performs site-specific endonucleolytic cleavage of HAC1u mRNA at both
the 5' and 3' splice junctions, removing an inhibitory intron and initiating
spliceosome-independent (unconventional) splicing.
"**Reaction:** Ire1's RNase performs **site-specific endonucleolytic cleavage** of **HAC1u mRNA** at both the **5′ and 3′ splice junctions**, thereby removing an inhibitory intron and initiating spliceosome-independent splicing."
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Cleavage-site specificity is determined by splice-junction sequence determinants:
point mutations of critical guanosines (e.g. G885C at the 5' junction) selectively
block cleavage at that junction. In vitro cleavage requires an adenosine nucleotide
cofactor (ATP required; ADP or AMP-PNP can substitute; GTP cannot).
"Point mutations in critical guanosine residues at splice junctions (e.g., **G885C at the 5′ junction**) selectively block cleavage at that junction in vivo and in vitro, demonstrating that **Ire1 recognizes specific splice-junction determinants** in HAC1... omission of ATP abolishes cleavage, while **ADP** or **AMP-PNP** can substitute; **GTP cannot**."
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Purified Ire1 fragment together with purified tRNA ligase (Trl1/Rlg1) is sufficient
to reconstitute correct HAC1 splicing in vitro; Trl1 ligates the exons after Ire1
cleavage.
"Sidrauski & Walter reconstituted the full splicing reaction in vitro with **purified Ire1 fragment + purified tRNA ligase**, showing that these components are sufficient to produce correctly spliced HAC1."
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Ire1 has a Ser/Thr kinase domain that undergoes trans-autophosphorylation upon
oligomerization, which is coupled to activation of the RNase domain in current
models of UPR induction.
"Ire1 has a **Ser/Thr kinase domain** that undergoes **trans-autophosphorylation** upon oligomerization, which is coupled to RNase activation in current models of UPR induction."
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Beyond enabling activation, kinase function is implicated in attenuation/homeostatic
shutdown, contributing to disassembly of Ire1 oligomers and termination of signaling.
"Beyond enabling activation, kinase function is implicated in **attenuation/homeostatic shutdown**: mechanistic syntheses report kinase-dependent processes contributing to the disassembly of Ire1 oligomers and termination of signaling."
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Ire1 is an ER membrane protein with a luminal stress-sensing domain and a cytosolic
kinase/RNase module; under stress it forms puncta/clusters on the ER membrane,
acting as a spatially organized RNA-processing hub, and HAC1u mRNA is recruited to
these clusters for splicing.
"Ire1 is an **ER membrane protein** with a luminal stress-sensing domain and cytosolic kinase/RNase module; it forms **puncta/clusters** on the ER membrane during stress, consistent with its role as a spatially organized RNA-processing hub... HAC1u mRNA is recruited to Ire1 puncta/clusters for splicing during ER stress."
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Under non-stress conditions Kar2/BiP binding keeps Ire1 in a less self-associated
state; ER stress promotes Kar2 dissociation and Ire1 self-association/activation.
Ire1 activation can also involve direct engagement of unfolded proteins via its
luminal domain, promoting oligomerization.
"Under non-stress conditions Kar2/BiP binding keeps Ire1 in a less self-associated state; ER stress promotes Kar2 dissociation and Ire1 self-association/activation... Ire1 activation can involve direct engagement of unfolded proteins via its luminal domain, which promotes oligomerization and signaling."
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Ire1 can be activated not only by unfolded proteins but also by lipid bilayer stress,
sensed via its transmembrane/amphipathic features; lipid bilayer stress favors dimeric
rather than large oligomeric assemblies and elicits weaker RNase output.
"Recent yeast-focused syntheses emphasize that Ire1 can be activated not only by unfolded proteins but also by **lipid bilayer stress**, sensed via Ire1's transmembrane/amphipathic features. LBS tends to promote **dimeric** rather than large oligomeric Ire1 assemblies and can elicit **weaker RNase output** and a milder UPR."
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Regulated Ire1-dependent decay (RIDD) of additional ER-associated mRNAs is absent
(or not convincingly supported) in S. cerevisiae; HAC1 is effectively the predominant
(possibly sole) physiologically relevant Ire1 RNase substrate in budding yeast.
"Authoritative 2023–2024 reviews state that **regulated Ire1-dependent decay (RIDD)**—Ire1 RNase cleavage of additional ER-associated mRNAs—is **absent (or not convincingly supported) in *S. cerevisiae***, in contrast to other organisms such as *S. pombe* and metazoans. The yeast literature summarized indicates that **HAC1 is effectively the predominant (possibly sole) physiologically relevant Ire1 RNase substrate** in budding yeast."
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Yeast UPR is effectively a single-sensor, single-transcription-factor architecture
(Ire1 -> Hac1), unlike metazoans which have additional sensors (PERK, ATF6).
"Yeast UPR is effectively a single-sensor, single-transcription-factor architecture (Ire1→Hac1), which enables unusually clean genetic epistasis and mechanistic dissection."
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A 2023 preprint reports that the cell wall integrity MAPK Slt2 enhances both HAC1
mRNA splicing and translation, adding a regulatory layer that promotes adaptation
to ER stress in S. cerevisiae.
"A 2023 bioRxiv preprint proposes that **MAPK Slt2** enhances both **HAC1 mRNA splicing and translation**, contributing to adaptation under ER stress."