G6pc2 (mouse): Bgee expression evidence

Generated by projects/BGEEDB_EXPRESSION/scripts/gene_report.py; do not edit. Source: Bgee 15.2 (mouse simple call files for present/absent calls with stages merged; REST API for stage-resolved present calls). Method and tier definitions: projects/BGEEDB_EXPRESSION/methods.md.

Command:

uv run python projects/BGEEDB_EXPRESSION/scripts/gene_report.py mouse G6pc2 --paralog G6pc1 --paralog G6pc3 --context gluconeogenesis:UBERON:0002107,UBERON:0001225,UBERON:0002108 --focus UBERON:0000006 --focus UBERON:0001264 --focus UBERON:0002107 --focus UBERON:0002113

1. Where the gene and its paralogs are expressed

gene	Bgee id	present / sampled entities	breadth	top present tissues (score)
G6pc2	ENSMUSG00000005232	105 / 362	0.29	islet of Langerhans (100); pancreas (90); epiblast cell in embryo (75); indifferent gonad (68); embryonic post-anal tail (68); urogenital fold (65); metanephric mesenchyme (61); vas deferens (59)
G6pc1	ENSMUSG00000078650	59 / 336	0.18	right kidney (98); adult mammalian kidney (98); left lobe of liver (98); liver (92); gall bladder (90); proximal tubule (90); small intestine Peyer's patch (89); cortex of kidney (86)
G6pc3	ENSMUSG00000034793	332 / 386	0.86	choroid plexus of fourth ventricle (96); spermatocyte (95); hindlimb stylopod muscle (95); right kidney (92); seminiferous tubule of testis (92); spermatid (92); yolk sac (91); entorhinal cortex (91)

2. GO terms with a GO anatomy, scored for the gene and each paralog

Tier per gene: ENRICHED (present in the term's anatomy and in the gene's own top 10%), CONSISTENT, ABSENT (calls exist there, all absent), ABSENT_DEVELOPMENTAL (absent, but the term is developmental and calls merge stages), NO_DATA. A paralog that is detected where the gene is absent shows the anatomy was sampled.

GO term	anatomy	G6pc2	G6pc1	G6pc3
none of the gene's GO terms names an anatomy

3. Context checks for terms without GO anatomy

context	gene	present in context	best in context	top-10 in context (chance)	breadth
gluconeogenesis (liver, cortex of kidney, small intestine)	G6pc2	9 present, 10 absent	UBERON:0001229 renal corpuscle (55.3)	1/10 (0.4)	0.29
gluconeogenesis (liver, cortex of kidney, small intestine)	G6pc1	17 present, 4 absent	UBERON:0001115 left lobe of liver (97.9)	6/10 (2.0)	0.18
gluconeogenesis (liver, cortex of kidney, small intestine)	G6pc3	17 present, 4 absent	UBERON:0004134 proximal tubule (87.3)	0/10 (0.4)	0.86

Calls inside the gluconeogenesis context, by gene (gold/silver; state, score):

G6pc2: epithelium of small intestine absent (45); ileal epithelium absent (44); fetal liver hematopoietic progenitor cell absent (43); crypt of Lieberkuhn of small intestine absent (40); metanephric cortical collecting duct absent (38); small intestine Peyer's patch absent (37); left lobe of liver absent (36); ileum absent (35); jejunum absent (33); duodenum absent (27); renal corpuscle present (55); metanephric proximal tubule present (47); liver present (42); proximal tubule present (31)
G6pc1: fetal liver hematopoietic progenitor cell absent (43); crypt of Lieberkuhn of small intestine absent (40); renal corpuscle absent (38); metanephric cortical collecting duct absent (38); left lobe of liver present (98); liver present (92); proximal tubule present (90); small intestine Peyer's patch present (89); cortex of kidney present (86); jejunum present (84); small intestine present (84); epithelium of small intestine present (83); duodenum present (82); ileum present (80); ileal epithelium present (79); metanephric proximal tubule present (50)
G6pc3: ileal epithelium absent (80); epithelium of small intestine absent (73); crypt of Lieberkuhn of small intestine absent (67); metanephric cortical collecting duct absent (58); proximal tubule present (87); cortex of kidney present (84); duodenum present (83); fetal liver hematopoietic progenitor cell present (75); jejunum present (75); ileum present (74); small intestine Peyer's patch present (73); small intestine present (72); liver present (68); left lobe of liver present (68); renal corpuscle present (68); metanephric proximal tubule present (64)

4. Stage-resolved present calls in anatomies of interest

Present calls only (the API reports no absent calls); a missing stage means no call, not absence. Stages broader than one developmental window (life cycle, organogenesis stage) are omitted.

UBERON:0000006 islet of Langerhans and its parts

gene	entity	stage	start (dpc)	score	data types
G6pc2	islet of Langerhans	neonate stage	19.5	99.6	Affymetrix
G6pc2	islet of Langerhans	5-week-old stage (mouse)	54.5	99.7	Affymetrix
G6pc3	islet of Langerhans	neonate stage	19.5	77.8	Affymetrix
G6pc3	islet of Langerhans	5-week-old stage (mouse)	54.5	80.2	Affymetrix

Stage-merged calls (present and absent) in islet of Langerhans and its parts:

G6pc2: islet of Langerhans present (gold, 100)
G6pc1: islet of Langerhans present (gold, 43)
G6pc3: islet of Langerhans present (gold, 84)

UBERON:0001264 pancreas and its parts

gene	entity	stage	start (dpc)	score	data types
G6pc2	pancreas	Theiler stage 23 (mouse)	15.0	65.5	Affymetrix
G6pc2	dorsal pancreas	Theiler stage 23 (mouse)	15.0	64.4	Affymetrix
G6pc2	pancreas	Theiler stage 24 (mouse)	16.0	82.0	Affymetrix
G6pc2	dorsal pancreas	Theiler stage 24 (mouse)	16.0	67.8	Affymetrix
G6pc2	pancreas	Theiler stage 26 (mouse)	18.0	90.8	Affymetrix
G6pc2	islet of Langerhans	neonate stage	19.5	99.6	Affymetrix
G6pc2	pancreas	1-week-old stage (mouse)	26.5	89.3	Affymetrix
G6pc2	islet of Langerhans	5-week-old stage (mouse)	54.5	99.7	Affymetrix
G6pc2	pancreas	2-month-old stage (mouse)	75.5	80.7	Affymetrix
G6pc3	dorsal pancreas	Theiler stage 20 (mouse)	12.0	85.3	Affymetrix
G6pc3	dorsal pancreas	Theiler stage 21 (mouse)	13.0	85.2	Affymetrix
G6pc3	dorsal pancreas	Theiler stage 22 (mouse)	14.0	87.6	Affymetrix
G6pc3	dorsal pancreas	Theiler stage 23 (mouse)	15.0	90.1	Affymetrix
G6pc3	dorsal pancreas	Theiler stage 24 (mouse)	16.0	89.4	Affymetrix
G6pc3	pancreas	Theiler stage 26 (mouse)	18.0	71.5	Affymetrix
G6pc3	islet of Langerhans	neonate stage	19.5	77.8	Affymetrix
G6pc3	pancreas	1-week-old stage (mouse)	26.5	76.4	Affymetrix
G6pc3	islet of Langerhans	5-week-old stage (mouse)	54.5	80.2	Affymetrix
G6pc3	pancreas	2-month-old stage (mouse)	75.5	81.8	Affymetrix

Stage-merged calls (present and absent) in pancreas and its parts:

G6pc2: islet of Langerhans present (gold, 100); pancreas present (gold, 90)
G6pc1: dorsal pancreas absent (gold, 48); pancreas present (gold, 44); islet of Langerhans present (gold, 43)
G6pc3: dorsal pancreas present (gold, 88); islet of Langerhans present (gold, 84); pancreas present (gold, 81)

UBERON:0002107 liver and its parts

gene	entity	stage	start (dpc)	score	data types
G6pc1	liver	Theiler stage 24 (mouse)	16.0	50.5	RNA-Seq
G6pc1	liver	Theiler stage 26 (mouse)	18.0	91.2	Affymetrix
G6pc1	liver	neonate stage	19.5	96.2	Affymetrix
G6pc1	liver	1-week-old stage (mouse)	26.5	97.6	Affymetrix
G6pc1	liver	2-week-old stage (mouse)	33.5	98.7	Affymetrix
G6pc1	liver	4-week-old stage (mouse)	47.5	97.9	Affymetrix
G6pc1	liver	5-week-old stage (mouse)	54.5	96.6	Affymetrix
G6pc1	liver	6-week-old stage (mouse)	61.5	97.5	Affymetrix
G6pc1	liver	7-week-old stage (mouse)	68.5	96.7	Affymetrix
G6pc1	liver	8-week-old stage (mouse)	75.5	97.7	Affymetrix
G6pc1	liver	9-week-old stage (mouse)	82.5	98.9	Affymetrix
G6pc1	liver	10-week-old stage (mouse)	89.5	97.1	Affymetrix
G6pc1	liver	11-week-old stage (mouse)	96.5	98.5	Affymetrix
G6pc1	liver	3-month-old stage (mouse)	103.5	98.3	Affymetrix
G6pc1	liver	5-month-old stage (mouse)	166.5	97.6	Affymetrix
G6pc2	liver	8-week-old stage (mouse)	75.5	46.2	Affymetrix
G6pc2	liver	11-week-old stage (mouse)	96.5	46.9	Affymetrix
G6pc2	liver	3-month-old stage (mouse)	103.5	60.2	Affymetrix
G6pc3	liver	Theiler stage 19 (mouse)	11.5	85.8	Affymetrix
G6pc3	liver	Theiler stage 20 (mouse)	12.0	75.6	Affymetrix
G6pc3	liver	Theiler stage 21 (mouse)	13.0	77.2	Affymetrix
G6pc3	fetal liver hematopoietic progenitor cell	Theiler stage 22 (mouse)	14.0	75.1	Affymetrix
G6pc3	liver	Theiler stage 23 (mouse)	15.0	75.1	Affymetrix
G6pc3	liver	Theiler stage 24 (mouse)	16.0	79.9	RNA-Seq
G6pc3	liver	Theiler stage 26 (mouse)	18.0	63.5	Affymetrix
G6pc3	liver	neonate stage	19.5	65.5	Affymetrix
G6pc3	liver	1-week-old stage (mouse)	26.5	65.4	Affymetrix
G6pc3	liver	4-week-old stage (mouse)	47.5	65.1	Affymetrix
G6pc3	liver	5-week-old stage (mouse)	54.5	64.2	Affymetrix
G6pc3	liver	7-week-old stage (mouse)	68.5	68.3	Affymetrix
G6pc3	liver	8-week-old stage (mouse)	75.5	71.5	Affymetrix
G6pc3	liver	9-week-old stage (mouse)	82.5	67.1	Affymetrix
G6pc3	liver	10-week-old stage (mouse)	89.5	67.9	Affymetrix
G6pc3	liver	11-week-old stage (mouse)	96.5	71.5	Affymetrix
G6pc3	liver	3-month-old stage (mouse)	103.5	69.9	Affymetrix
G6pc3	liver	5-month-old stage (mouse)	166.5	74.1	Affymetrix

Stage-merged calls (present and absent) in liver and its parts:

G6pc2: fetal liver hematopoietic progenitor cell absent (gold, 43); left lobe of liver absent (gold, 36); liver present (gold, 42)
G6pc1: fetal liver hematopoietic progenitor cell absent (gold, 43); left lobe of liver present (gold, 98); liver present (gold, 92)
G6pc3: fetal liver hematopoietic progenitor cell present (silver, 75); liver present (gold, 68); left lobe of liver present (gold, 68)

UBERON:0002113 kidney and its parts

gene	entity	stage	start (dpc)	score	data types
G6pc1	metanephric proximal tubule	Theiler stage 23 (mouse)	15.0	50.3	Affymetrix
G6pc1	kidney	Theiler stage 24 (mouse)	16.0	58.1	Affymetrix
G6pc1	metanephros	neonate stage	19.5	95.3	Affymetrix
G6pc1	adult mammalian kidney	neonate stage	19.5	64.5	EST
G6pc1	metanephros	1-week-old stage (mouse)	26.5	98.3	Affymetrix
G6pc1	adult mammalian kidney	2-week-old stage (mouse)	33.5	99.5	Affymetrix
G6pc1	adult mammalian kidney	6-week-old stage (mouse)	61.5	98.2	Affymetrix
G6pc1	adult mammalian kidney	7-week-old stage (mouse)	68.5	97.8	Affymetrix
G6pc1	adult mammalian kidney	8-week-old stage (mouse)	75.5	98.8	Affymetrix
G6pc1	proximal tubule	2-month-old stage (mouse)	75.5	97.6	RNA-Seq
G6pc1	right kidney	2-month-old stage (mouse)	75.5	98.3	RNA-Seq
G6pc1	adult mammalian kidney	3-month-old stage (mouse)	103.5	99.0	Affymetrix
G6pc1	adult mammalian kidney	5-month-old stage (mouse)	166.5	99.6	Affymetrix
G6pc2	metanephros	Theiler stage 20 (mouse)	12.0	51.2	Affymetrix
G6pc2	metanephric renal vesicle	Theiler stage 20 (mouse)	12.0	42.9	Affymetrix
G6pc2	metanephros	Theiler stage 21 (mouse)	13.0	54.3	Affymetrix
G6pc2	metanephric S-shaped body	Theiler stage 22 (mouse)	14.0	54.1	Affymetrix
G6pc2	renal corpuscle	Theiler stage 23 (mouse)	15.0	55.3	Affymetrix
G6pc2	metanephric loop of Henle	Theiler stage 23 (mouse)	15.0	53.7	Affymetrix
G6pc2	metanephric S-shaped body	Theiler stage 23 (mouse)	15.0	48.9	Affymetrix
G6pc2	metanephric proximal tubule	Theiler stage 23 (mouse)	15.0	47.3	Affymetrix
G6pc2	renal medulla interstitium	Theiler stage 23 (mouse)	15.0	55.3	Affymetrix
G6pc2	metanephros	Theiler stage 24 (mouse)	16.0	39.7	Affymetrix
G6pc2	kidney	Theiler stage 24 (mouse)	16.0	60.5	Affymetrix
G6pc2	metanephros	neonate stage	19.5	59.3	Affymetrix
G6pc2	metanephros	1-week-old stage (mouse)	26.5	44.1	Affymetrix
G6pc2	adult mammalian kidney	2-week-old stage (mouse)	33.5	55.3	Affymetrix
G6pc2	adult mammalian kidney	8-week-old stage (mouse)	75.5	42.6	Affymetrix
G6pc3	metanephric ureteric bud	Theiler stage 19 (mouse)	11.5	68.7	Affymetrix
G6pc3	metanephros	Theiler stage 20 (mouse)	12.0	69.1	Affymetrix
G6pc3	metanephric renal vesicle	Theiler stage 20 (mouse)	12.0	68.2	Affymetrix
G6pc3	metanephros	Theiler stage 21 (mouse)	13.0	67.2	Affymetrix
G6pc3	metanephros	Theiler stage 22 (mouse)	14.0	58.7	Affymetrix
G6pc3	renal corpuscle	Theiler stage 23 (mouse)	15.0	68.0	Affymetrix
G6pc3	metanephric S-shaped body	Theiler stage 23 (mouse)	15.0	67.0	Affymetrix
G6pc3	metanephric proximal tubule	Theiler stage 23 (mouse)	15.0	64.0	Affymetrix
G6pc3	renal medulla collecting duct	Theiler stage 23 (mouse)	15.0	65.6	Affymetrix
G6pc3	ureteric bud tip	Theiler stage 23 (mouse)	15.0	64.1	Affymetrix
G6pc3	kidney	Theiler stage 24 (mouse)	16.0	82.0	Affymetrix
G6pc3	metanephros	neonate stage	19.5	69.0	Affymetrix
G6pc3	metanephros	1-week-old stage (mouse)	26.5	75.8	Affymetrix
G6pc3	adult mammalian kidney	2-week-old stage (mouse)	33.5	69.5	Affymetrix
G6pc3	adult mammalian kidney	6-week-old stage (mouse)	61.5	83.2	Affymetrix
G6pc3	adult mammalian kidney	7-week-old stage (mouse)	68.5	73.0	Affymetrix
G6pc3	adult mammalian kidney	2-month-old stage (mouse)	75.5	83.2	Affymetrix
G6pc3	adult mammalian kidney	8-week-old stage (mouse)	75.5	82.7	Affymetrix
G6pc3	proximal tubule	2-month-old stage (mouse)	75.5	92.8	RNA-Seq
G6pc3	right kidney	2-month-old stage (mouse)	75.5	92.5	RNA-Seq
G6pc3	adult mammalian kidney	3-month-old stage (mouse)	103.5	80.4	Affymetrix
G6pc3	adult mammalian kidney	5-month-old stage (mouse)	166.5	93.1	Affymetrix

Stage-merged calls (present and absent) in kidney and its parts:

G6pc2: metanephric collecting duct absent (gold, 41); metanephric ureteric bud absent (gold, 39); renal medulla collecting duct absent (gold, 38); ureteric bud tip absent (gold, 38); metanephric cortical collecting duct absent (gold, 38); right kidney absent (silver, 36); renal corpuscle present (silver, 55); renal medulla interstitium present (gold, 55); metanephric loop of Henle present (silver, 54); metanephric S-shaped body present (silver, 52); metanephros present (silver, 49); metanephric proximal tubule present (silver, 47); metanephric renal vesicle present (silver, 44); kidney present (gold, 42); adult mammalian kidney present (gold, 41); proximal tubule present (silver, 31)
G6pc1: metanephric collecting duct absent (gold, 41); metanephric S-shaped body absent (gold, 41); metanephric renal vesicle absent (gold, 41); metanephric ureteric bud absent (gold, 39); renal medulla collecting duct absent (gold, 38); ureteric bud tip absent (gold, 38); renal medulla interstitium absent (gold, 38); renal corpuscle absent (gold, 38); metanephric cortical collecting duct absent (gold, 38); metanephric loop of Henle absent (gold, 37); right kidney present (gold, 98); adult mammalian kidney present (gold, 98); proximal tubule present (gold, 90); cortex of kidney present (gold, 86); kidney present (gold, 85); metanephros present (gold, 58); metanephric proximal tubule present (silver, 50)
G6pc3: renal medulla interstitium absent (silver, 63); metanephric cortical collecting duct absent (gold, 58); metanephric loop of Henle absent (gold, 58); metanephric collecting duct absent (gold, 54); right kidney present (gold, 92); proximal tubule present (gold, 87); cortex of kidney present (gold, 84); adult mammalian kidney present (gold, 84); kidney present (gold, 79); metanephric ureteric bud present (gold, 69); renal corpuscle present (silver, 68); metanephros present (gold, 68); renal medulla collecting duct present (silver, 66); ureteric bud tip present (silver, 64); metanephric proximal tubule present (silver, 64); metanephric renal vesicle present (silver, 63); metanephric S-shaped body present (silver, 60)