Gene Ontology annotation through association of InterPro records with GO terms
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping
Gene Ontology annotation based on curation of immunofluorescence data
Electronic Gene Ontology annotations created by ARBA machine learning models
Combined Automated Annotation using Multiple IEA Methods
YAC complementation shows a requirement for Wt1 in the development of epicardium, adrenal gland and throughout nephrogenesis.
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WT1 expressed in proepicardium, epicardium, and subepicardial mesenchymal cells
"Using a lacZ reporter gene inserted into a YAC construct, we demonstrate that WT1 is expressed in the early proepicardium, the epicardium and the subepicardial mesenchymal cells (SEMC)."
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Wt1 null mice die at E13.5 due to heart failure
"Knock-out mice were shown to have defects in the urogenital system and to die at embryonic day E13.5, probably due to heart failure."
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Continuous requirement for WT1 during nephrogenesis
"Analysis of the observed hypoplastic kidneys demonstrate a continuous requirement for WT1 during nephrogenesis, in particular, in the formation of mature glomeruli."
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Adrenal gland development severely affected
"Finally, we show that the development of adrenal glands is also severely affected in partially rescued embryos."
WT1 is a key regulator of podocyte function: reduced expression levels cause crescentic glomerulonephritis and mesangial sclerosis.
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Reduced WT1 causes crescentic glomerulonephritis or mesangial sclerosis
"we demonstrate that reduced expression levels of WT1 result in either crescentic glomerulonephritis or mesangial sclerosis depending on the gene dosage."
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WT1 regulates nphs1 and podocalyxin expression
"Strikingly, the two podocyte-specific genes nphs1 and podocalyxin are dramatically downregulated in mice with decreased levels of Wt1, suggesting that these two genes act downstream of Wt1."
Human platelet-derived growth factor A chain is transcriptionally repressed by the Wilms tumor suppressor WT1.
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WT1 represses PDGFA transcription
"WT1 bound to several sites in this region of the promoter, as demonstrated by gel-shift analysis and DNase I footprinting, and functioned as a powerful repressor of PDGF-A transcription in vivo."
BASP1 is a transcriptional cosuppressor for the Wilms' tumor suppressor protein WT1.
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BASP1 interacts with WT1
"WT1 and BASP1 associate within the nuclei of cells that naturally express both proteins."
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BASP1 converts WT1 from activator to repressor
"BASP1 can confer WT1 cosuppressor activity in transfection assays, and elimination of endogenous BASP1 expression augments transcriptional activation by WT1."
Why zinc fingers prefer zinc: ligand-field symmetry and the hidden thermodynamics of metal ion selectivity.
SUMO-1 modification of the Wilms' tumor suppressor WT1.
Characterization of the zinc finger protein encoded by the WT1 Wilms' tumor locus.
Wilms tumor suppressor, Wt1, is a transcriptional activator of the erythropoietin gene.
WT1 interacts with the splicing protein RBM4 and regulates its ability to modulate alternative splicing in vivo.
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WT1 interacts with RBM4
"Here we show that WT1 interacts with the novel splicing regulator RBM4."
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+KTS isoform modulates RBM4 splicing activity
"We found that overexpressed WT1(+KTS) abrogated this effect of RBM4 on splice-site selection, whereas WT1(-KTS) did not. We conclude that the (+KTS) form of WT1 is able to inhibit the effect of RBM4 on alternative splicing."
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Colocalization in nuclear speckles
"Each protein was found to colocalize in nuclear speckles and to cosediment with supraspliceosomes in glycerol gradients."
Control of epigenetic states by WT1 via regulation of de novo DNA methyltransferase 3A.
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WT1 transactivates DNMT3A expression
"We demonstrate that depletion of WT1 by short-interfering RNAs leads to reduced DNMT3A in Wilms' tumour cells and human embryonal kidney-derived cell lines."
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WT1 recruited to DNMT3A promoter by ChIP
"Chromatin immunoprecipitation assays demonstrate WT1 recruitment to the DNMT3A promoter region and reporter assays confirm that WT1 directly transactivates DNMT3A expression."
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WT1 overexpression causes promoter methylation changes
"Using genome-wide promoter methylation arrays, we show that human embryonal kidney cells over-expressing WT1 acquire DNA methylation changes at specific gene promoters where DNMT3A recruitment is increased, with hypermethylation being associated with silencing of gene expression."
Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence
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WT1 binds 5'-GCG(T/G)GGGCG-3' motif
"Consequently, WT1 binds the same consensus sequence as Egr1/Zif268 (Stoll et al. 2007)"
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High affinity for unmethylated and 5mC-containing DNA
"Egr1/Zif268 and WT1 showed slightly higher affinity for the fully methylated sequence by factors of ∼2.8 (Egr1) and ∼1.8 (WT1)"
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Lower affinity for oxidized forms (5hmC, 5fC, 5caC)
"Both displayed high affinity for the sequence when C or 5 mC was present and much reduced affinity when 5 hmC or 5 fC was present"
Regulation of the proto-oncogenes bcl-2 and c-myc by the Wilms' tumor suppressor gene WT1.
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WT1 represses BCL2 and MYC transcription
"We found that WT1 can repress transcription of both the bcl-2 and c-myc promoters. This suggests that WT1 regulates bcl-2 and c-myc during renal development, and the loss of functional WT1 results in deregulation of bcl-2 and c-myc, contributing to tumor formation."
Repression of Pax-2 by WT1 during normal kidney development.
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WT1 binds PAX2 promoter elements
"Binding of WT1 to three high affinity sites in the 5' untranslated Pax-2 leader sequence was demonstrated by DNAseI footprinting analysis."
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WT1-dependent transcriptional repression of PAX2
"Furthermore, co-transfection assays using CAT reporter constructs under the control of Pax-2 regulatory sequences demonstrated WT1-dependent transcriptional repression."
High affinity binding sites for the Wilms' tumour suppressor protein WT1.
The Wilms' tumor suppressor gene WT1 is negatively autoregulated.
The WT1 Wilms tumor gene product: a developmentally regulated transcription factor in the kidney that functions as a tumor suppressor.
Inhibition of cellular proliferation by the Wilms tumor suppressor WT1 requires association with the inducible chaperone Hsp70.
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WT1 interacts with Hsp70
"By immunoprecipitation and protein microsequencing analysis, we have identified a major cellular protein associated with endogenous WT1 to be the inducible chaperone Hsp70."
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Hsp70 required for WT1 antiproliferative function
"These observations indicate that Hsp70 is an important cofactor for the function of WT1, and suggest a potential role for this chaperone during kidney differentiation."
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WT1 localizes to nuclear speckles
"Hsp70 is recruited to the characteristic subnuclear clusters that contain WT1."
The Wilms' tumor gene WT1 can regulate genes involved in sex determination and differentiation: SRY, Müllerian-inhibiting substance, and the androgen receptor.
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WT1 activates SRY promoter
"SRY (the sex-determining region of the Y chromosome) promoter was strongly activated by the WT1 isoforms without the KTS tripeptide, WT1(-)KTS, but was not activated by the WT1 isoforms with the KTS tripeptide, WT1(+)KTS, in all cells tested."
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WT1 represses MIS and androgen receptor
"The MüAdullerian-inhibiting substance (MIS) promoter was strongly repressed by WT1(-)KTS isoforms and more weakly repressed by the WT1(+)KTS isoforms in Sertoli cells but not in HeLa cells."
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Isoform-specific effects (-KTS vs +KTS)
"The second alternative splicing site, which inserts the tripeptide KTS, alters the DNA binding capability."
Shifted Transversal Design smart-pooling for high coverage interactome mapping.
A directed protein interaction network for investigating intracellular signal transduction.
A proteome-scale map of the human interactome network.
WT1 recruits TET2 to regulate its target gene expression and suppress leukemia cell proliferation.
Systematic interactome mapping of acute lymphoblastic leukemia cancer gene products reveals EXT-1 tumor suppressor as a Notch1 and FBWX7 common interactor.
Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations.
PINCH1 is transcriptional regulator in podocytes that interacts with WT1 and represses podocalyxin expression.
Differential regulation of the human Wilms tumour suppressor gene (WT1) promoter by two isoforms of PAX2.
Transcriptional regulation of the human Wilms' tumor gene (WT1). Cell type-specific enhancer and promiscuous promoter.
WT1 suppresses synthesis of the epidermal growth factor receptor and induces apoptosis.
Dynamic interaction between WT1 and BASP1 in transcriptional regulation during differentiation.
Induction of Rb-associated protein (RbAp46) by Wilms' tumor suppressor WT1 mediates growth inhibition.
Nuclear localization of the protein encoded by the Wilms' tumor gene WT1 in embryonic and adult tissues.
Upregulation of c-MYC in WT1-mutant tumors: assessment of WT1 putative transcriptional targets using cDNA microarray expression profiling of genetically defined Wilms' tumors.
Membranoproliferative glomerulonephritis associated with a mutation in Wilms' tumour suppressor gene 1.
Comparative in situ hybridization analysis of PAX2, PAX8, and WT1 gene transcription in human fetal kidney and Wilms' tumors.
Expression, regulation, and function of paired-box gene 8 in the human placenta and placental cancer cell lines.
Developmental changes in human fetal testicular cell numbers and messenger ribonucleic acid levels during the second trimester.
Reactome pathway annotation
Deep research report (falcon provider) - WT1 functional annotation
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WT1 contains four C2H2 zinc fingers mediating high-affinity binding to GC-rich motifs such as 5'-GCG(T/G)GGGCG-3' in target promoters/enhancers
"Domain architecture and nucleic-acid interactions: WT1 contains four C2H2 zinc fingers (exons 7-10) mediating high-affinity binding to GC-rich motifs such as 5'-GCG(T/G)GGGCG-3' in target promoters/enhancers"
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The -KTS isoform binds DNA sequence-specifically and drives transcriptional programs, while +KTS shows low DNA affinity and has RNA-binding/processing roles
"The -KTS isoform binds DNA sequence-specifically and drives transcriptional programs, whereas the +KTS isoform shows low DNA affinity, associates with spliceosomal components, and has RNA-binding/processing roles"
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WT1(+KTS) co-localizes with splicing speckles and interacts with splicing factors U2AF65 and WTAP
"WT1(+KTS) co-localizes with splicing speckles, interacts with splicing factors (U2AF65, WTAP), forms complexes with ZNF255 and BASP1 that participate in RNA maturation"
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WT1 is essential for nephron development and adult podocyte integrity
"Nephrogenesis and podocyte maintenance: WT1 binds and regulates kidney lineage and podocyte genes and is essential for nephron development and adult podocyte integrity"
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WT1 mRNA is overexpressed in >80% of AML and used for MRD monitoring
"WT1 mRNA is overexpressed in >80% of AML; standardized ELN qRT-PCR thresholds are widely used for MRD risk stratification and post-transplant surveillance"
Deep research report (cyberian provider) - WT1 comprehensive functional analysis
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WT1 zinc fingers 2-4 insert into major groove for base-specific DNA contacts; ZnF1 amplifies affinity without contributing to sequence specificity
"The second, third, and fourth zinc finger domains insert deep into the major groove of DNA where they make base-specific contacts. Zinc fingers 2 and 3 are primarily responsible for most of the binding affinity and can function as a minimal DNA binding domain, while zinc finger 4 is indispensable for target specificity"
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WT1-DNA binding has Kd of 1.14 x 10^-9 M and is entropy-driven, unlike EGR1
"Quantitative binding studies have demonstrated that recombinant WT1 zinc fingers bind to the dodecamer DNA sequence GCG-TGG-GCG-TGT with high affinity, exhibiting a dissociation constant (Kd) of 1.14 x 10^-9 M under physiological conditions. Thermodynamic analysis revealed that WT1-DNA interaction is an entropy-driven process"
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KTS insertion increases linker flexibility between ZnF3-4, abolishing ZnF4 DNA contact
"The molecular basis for the functional differences between +KTS and -KTS isoforms was elucidated by NMR structural studies demonstrating that the KTS insertion increases the flexibility of the linker between fingers 3 and 4, abrogating the binding of the fourth zinc finger to its cognate site in the DNA major groove"
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Normal +KTS/-KTS ratio is 2:1; Frasier syndrome results from altered ratio to 1:2
"The physiological importance of maintaining the correct ratio of +KTS to -KTS isoforms (normally approximately 2:1) is dramatically illustrated by Frasier syndrome, in which mutations disrupting the +KTS splice site alter this ratio to 1:2"
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p53 interaction converts WT1 from repressor to activator; WT1 stabilizes p53 protein
"In the absence of p53, WT1 functions as a potent transcriptional activator of EGR1-like promoter sequences rather than as a repressor. WT1 expression can stabilize p53 protein, enhance its DNA binding to target sequences"
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BASP1 myristoylation recruits PIP2 to promoters, enabling HDAC1-mediated repression
"Mechanistically, myristoylated BASP1 binds to nuclear phosphatidylinositol 4,5-bisphosphate (PIP2), which leads to the recruitment of PIP2 to the promoter regions of WT1-dependent target genes. This association with PIP2 is required for the interaction of BASP1 with histone deacetylase 1 (HDAC1), enabling chromatin deacetylation and gene silencing"
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WT1 directly activates nephrin (NPHS1) transcription >10-fold via specific promoter element
"WT1 binds to a specific responsive element in the nephrin promoter and activates transcription more than 10-fold. Transgenic mouse analysis confirmed that this WT1 binding site is required for podocyte-specific nephrin expression in vivo"
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WT1 directly activates SF1 and SRY in gonad development; DDS mutations fail to activate SRY
"The -KTS isoform of WT1, but not the +KTS form, directly binds to and transactivates the Sf1 promoter through four identified binding sites. WT1 also directly regulates the sex-determining gene SRY by activating its expression. Mutant WT1 proteins found in Denys-Drash syndrome patients fail to activate the SRY promoter"
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WT1 required for epicardial EMT in heart development via Wnt/beta-catenin and retinoic acid pathways
"WT1 is expressed in the proepicardium and developing epicardium, where it is required for epithelial-to-mesenchymal transition (EMT) that generates cardiovascular progenitor cells. WT1 regulates epicardial EMT through multiple signaling pathways including canonical Wnt/beta-catenin signaling and retinoic acid signaling through direct regulation of Raldh2 expression"
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WT1 ZnF1 is more important for RNA binding than DNA binding; +KTS and -KTS bind RNA similarly
"While zinc fingers 2, 3, and 4 are required for high-affinity DNA binding, zinc finger 1—which is dispensable for DNA binding—is more important for RNA binding. Consequently, the KTS insertion has minimal effect on RNA affinity"