Gene Ontology annotation through association of InterPro records with GO terms
Annotation inferences using phylogenetic trees
Electronic Gene Ontology annotations created by ARBA machine learning models
The structure of aggrecan fragments in human synovial fluid. Evidence for the involvement in osteoarthritis of a novel proteinase which cleaves the Glu 373-Ala 374 bond of the interglobular domain.
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Aggrecan fragments recovered from human synovial fluid all begin at a single new N-terminus, generated by cleavage of the aggrecan core protein at the Glu373-Ala374 bond in the interglobular domain between G1 and G2.
"This NH2 terminus results from cleavage of the human aggrecan core protein at the Glu 373-Ala 374 bond within the interglobular domain between the G1 and G2 domains."
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The cleavage is attributed to a cartilage proteinase acting on aggrecan, so aggrecan is the substrate of the proteolytic event, not its agent.
"is promoted by the action of a normal cartilage proteinase which cleaves the Glu 373-Ala 374 bond of the interglobular domain"
Interaction of cartilage oligomeric matrix protein/thrombospondin 5 with aggrecan.
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COMP binds aggrecan directly in a solid-phase assay, dependent on COMP's calcium-replete conformation and mediated in part through aggrecan's glycosaminoglycan side chains.
"Using a solid-phase binding assay, we have shown that COMP/TSP5 can bind aggrecan."
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The interaction is partly glycosaminoglycan-mediated, which is why it is best expressed as extracellular matrix binding rather than as bare protein binding.
"Soluble glycosaminoglycans (GAGs) partially inhibited binding, suggesting that the interaction was mediated in part through aggrecan GAG side chains."
A missense mutation in the aggrecan C-type lectin domain disrupts extracellular matrix interactions and causes dominant familial osteochondritis dissecans.
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A heterozygous V2303M substitution in the aggrecan G3 C-type lectin causes dominant familial osteochondritis dissecans and abolishes binding of the recombinant G3 domain to fibulin-1, fibulin-2 and tenascin-R.
"Binding studies with recombinant mutated and wild-type G3 proteins showed loss of fibulin-1, fibulin-2, and tenascin-R interactions for the V2303M protein."
Proteomics characterization of extracellular space components in the human aorta.
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The study explains that guanidine-HCl extraction solubilizes tightly bound extracellular matrix components, including aggregating proteoglycans. This methodological statement alone is not an aggrecan-specific identification result.
"Guanidine HCl extractions were developed more than 40 years ago as a very effective way to solubilize most of the strongly bound ECM components, including large aggregating proteoglycans (versican, aggrecan, etc.)"
Proteoglycan form and function: A comprehensive nomenclature of proteoglycans.
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Aggrecan aggregates with hyaluronan and link protein into complexes exceeding 200 MDa and is the principal load-bearing proteoglycan of cartilage.
"is the principal load-bearing proteoglycan of cartilage"
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The G1-hyaluronan-link protein ternary complex immobilises aggrecan into large aggregates that provide cartilage with its mechanical properties.
"The G1/hyaluronan/link protein ternary complex is very stable thereby immobilizing the aggrecan into enormous complexes that maintain a stable network and provide mechanical properties to cartilage."
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The aggregates form a densely packed hydrated gel within the collagen fibril network.
"These large aggregates generate a densely-packed, hydrated gel enmeshed in a network of reinforcing collagen fibrils and other proteoglycans"
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The G3 domain binds tenascins, fibulins and sulfated glycolipids, integrating aggrecan into the wider matrix.
"Moreover, the G3 domain of aggrecan interacts with tenascins, fibulins and sulfated glycolipids"
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Unlike the other lecticans, aggrecan's brain expression is concentrated in perineuronal nets.
"Aggrecan is also expressed in the brain, and unlike other hyalectans, is expressed primarily in the perineuronal nets"
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The interglobular region between G1 and G2 carries the protease-sensitive sites responsible for aggrecan degradation in arthritis.
"An interglobular region, between G1 and G2, has a rod-like structure and harbors several protease-sensitive sites involved in the partial degradation of aggrecan in arthritis and other inflammatory diseases."
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Animals lacking cartilage aggrecan have shortened long bones and die perinatally, establishing that aggrecan is required for cartilage development.
"In both mutant animals, there is little or no aggrecan in cartilage leading to shortened long bones and lethality"
Extracellular matrix remodelling in response to venous hypertension: proteomics of human varicose veins.
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Aggrecan's negatively charged glycans attract water and thereby confer resistance to compression.
"Negatively charged glycans on the surface of aggrecan attract water and therefore confer resistance to compression."
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Aggrecan is present in normal venous tissue and is lost in varicose veins at both protein and transcript level.
"Extracellular matrix remodelling in varicose veins was characterized by a loss of aggrecan and several small leucine-rich proteoglycans"
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This study is the first identification of aggrecan in venous tissue.
"To our knowledge, the present study is the first to report the identification of aggrecan in venous tissue."
Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains.
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The network combines systematic yeast two-hybrid screening with literature interactions. The available abstract does not establish the validation status or functional significance of the specific ACAN-APP pair.
"is generated by systematic yeast two-hybrid interaction screening"
Novel missense ACAN gene variants linked to familial osteochondritis dissecans cluster in the C-terminal globular domain of aggrecan.
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Aggrecan is required for both skeletal growth and articular cartilage function.
"The cartilage aggrecan proteoglycan is crucial for both skeletal growth and articular cartilage function."
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Missense variants in the G3 C-type lectin repeat reduce secretion of both recombinant variant protein and full-length aggrecan from heterozygous patient cartilage.
"Functional studies showed that neither recombinant variant proteins, nor full-length variant aggrecan proteoglycan from heterozygous patient cartilage, were secreted to the same level as wild-type aggrecan."
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The same variants reduce binding to known cartilage extracellular matrix ligands, establishing the G3 C-type lectin as a matrix-binding module.
"The variant proteins also showed decreased binding to known cartilage extracellular matrix ligands."
Aggrecan immobilizes to perineuronal nets through hyaluronan-dependent and hyaluronan-independent binding activities.
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The cocrystal structure of the human ACAN G1 region with a hyaluronan decasaccharide shows the immunoglobulin domain and two Link modules acting as a single structural unit, with hyaluronan clamped in a groove spanning the tandem Link domains.
"We demonstrate that the single immunoglobulin domain and the two Link modules that comprise the G1 region form a single structural unit, and that HA is clamped inside a groove that spans the length of the tandem Link domains."
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Human ACAN G1 binds immobilised hyaluronan with an affinity of 234 nM measured by biolayer interferometry, agreeing with an earlier surface plasmon resonance determination.
"In these experiments, ACAN binds to immobilized HA with an affinity of 234 nM, which is consistent with the value of 226 nM reported in an earlier study using surface plasmon resonance"
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Recombinant human G1 and G1-G2 fragments added to mouse cortical neuron cultures bind pre-existing perineuronal nets with high specificity.
"both fragments of ACAN bound highly and very specifically to PNNs on cultured cortical neurons"
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Abolishing hyaluronan binding by point mutation only reduces, rather than prevents, incorporation into perineuronal nets, so a hyaluronan-independent anchoring activity also operates.
"Thus, these results suggest that ACAN can be recruited into PNNs independently of its HA-binding activity."
Unknown endo-β-galactosidase cleaves keratan chain
B4GALTs transfer Gal to the N-glycan precursor
B3GNT1,2,3,4,7 add GlcNAc to form Keratan-PG
CHST1 transfers sulfate to Gal on keratan chain
KSPG is secreted from the cell
CHST2,3,5,6 transfer sulfate to GlcNAc on keratan chain
Extracellular KSPG translocates to the lysosome for degradation
B4GALTs transfer Gal to the keratan chain
ST3GAL1-4,6 optionally cap keratan chain
B4GALTs transfer Gal to a branch of keratan
Aggrecan binds Hyaluronan and HAPLN1
Tenascins C, R, (X, N) bind lecticans
COMP binds collagen, fibronectin, aggrecan and matrilins
Defective B4GALT1 does not transfer Gal to the keratan chain
Defective ST3GAL3 does not transfer SA to keratan
Defective CHST6 does not transfer SO4(2-) to GlcNAc residues on keratan-PG
HTRA1 hydrolyzes ACAN (Aggrecan)
Defective B4GALT1 does not transfer Gal to the N-glycan precursor
Defective B4GALT1 does not transfer Gal to a branch of keratan
UniProt entry P16112 (ACAN_HUMAN), Aggrecan core protein
CD44 binds a chondroitin sulfate proteoglycan, aggrecan.