Gene Ontology annotation through association of InterPro records with GO terms
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Combined Automated Annotation using Multiple IEA Methods
Low-pH-dependent fusion of Sindbis virus with receptor-free cholesterol- and sphingolipid-containing liposomes.
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Sindbis virions fuse efficiently with receptor-free liposomes, showing that receptor interaction is not a mechanistic requirement for fusion.
"SIN fused efficiently with receptor-free liposomes"
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Fusion is strictly low-pH dependent, optimal at pH 5.0 with a threshold at pH 6.0 and undetectable at neutral pH, supporting entry by fusion from within acidic endosomes.
"Fusion was optimal at pH 5.0, with a threshold at pH 6.0, and"
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Fusion requires both cholesterol and sphingolipid in the target membrane, with cholesterol driving low-pH binding and sphingolipid catalysing the fusion step.
"Fusion of SIN required the presence of both cholesterol and sphingolipid in the target liposomes"
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Low pH dissociates the E2-E1 heterodimer and generates a trypsin-resistant E1 homotrimer that kinetically precedes fusion, identifying the E1 trimer as the fusion-active conformation.
"the E1 trimer represents the fusion-active conformation of the viral spike"
Interfacial domains in Sindbis virus 6K protein. Detection and functional characterization.
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Wild-type 6K expressed from a Sindbis replicon strongly increases membrane permeability to hygromycin B in BHK cells, while interfacial-domain mutants permeabilize less, linking the conserved pretransmembrane interfacial motif to viroporin activity.
"synthesized both capsid protein and 6K. Transfection of the construct with"
Structure of Sindbis virus core protein reveals a chymotrypsin-like serine proteinase and the organization of the virion.
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The Sindbis capsid (core) protein fold from residue 114 to 264 is homologous to chymotrypsin-like serine proteinases, with His 141, Asp 163 and Ser 215 positioned as a canonical catalytic triad.
"chymotrypsin-like serine proteinases with catalytic residues His 141, Asp 163"
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The C-terminal tryptophan remains in the P1 substrate site after autocatalytic cis cleavage, leaving the proteinase inactive - a single-turnover, self-limiting activity.
"autocatalytic cis cleavage of the capsid protein, thus rendering the proteinase"
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Model building of the core protein dimer indicates the nucleocapsid has T=4 quasisymmetry.
"nucleocapsid is likely to have T = 4 quasisymmetry."
The alphavirus 6K protein activates endogenous ionic conductances when expressed in Xenopus oocytes.
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Sindbis 6K expressed in Xenopus oocytes localized to both the plasma membrane and the endoplasmic reticulum membrane.
"6K was located at both the plasma and the endoplasmic"
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No intrinsic channel properties of 6K were detected in oocytes; the currents observed were endogenous oocyte conductances upregulated downstream of reticular calcium-store depletion.
"6K upregulated endogenous currents"
Image-based genome-wide siRNA screen identifies selective autophagy factors.
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Host SMURF1 and the Sindbis capsid protein co-immunoprecipitate from infected mouse embryonic fibroblasts and HeLa cells.
"Smurf1 and SIN capsid protein co-immunoprecipitate in SIN-infected MEFs and HeLa cells"
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SMURF1 is required for targeting the Sindbis capsid protein to autophagosomes and for its proteasome-independent degradation; capsid ubiquitination was not detected and SMURF1's role in selective autophagy does not require its ligase activity.
"Smurf1 is required for SIN capsid targeting to autophagosomes"
Imaging of the alphavirus capsid protein during virus replication.
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A tetracysteine tag at capsid position Q94 permits biarsenical dye labelling without detectable effects on virus growth, particle morphology or protein distribution, validating the imaging system.
"Abundant Q94-TC virus particles were observed budding at the plasma membrane"
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Tagged capsid protein is diffusely cytoplasmic with three distinct classes of foci: motile E2-positive internal puncta, non-motile G3BP/nsP3-positive structures, and plasma-membrane puncta.
"distributed diffusely in the cytoplasm as before but also showed distinct foci"
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Capsid puncta at the plasma membrane colocalize with E2, recruit newly synthesized capsid, require the E2-capsid interaction (abolished by E2 Y400K) and are not replication complexes, consistent with sites of assembly and egress.
"Capsid puncta were also observed at the PM."
The Sindbis virus 6K protein can be detected in virions and is acylated with fatty acids.
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The 6K protein is heavily acylated with long-chain fatty acids in hydroxylamine-sensitive ester bonds and is detectable in purified virion preparations.
"that the 6K protein can be detected in"
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6K is present in virions at low stoichiometry, 0.08-0.12 relative to E1 plus E2, although in infected cells 4K plus 6K are roughly equimolar with the glycoproteins.
"ratio of 6K to E1 + E2 ranged from 0.08 to 0.12."
Biosynthesis, membrane translocation, and surface expression of Sindbis virus E1 glycoprotein.
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E1 carries internal signal sequences, can be inserted into the ER membrane independently of the pE2 signal sequence, and is efficiently transported to the plasma membrane in the absence of pE2/E2.
"transported to the plasma membrane in the absence of PE2/E2; exit from the"
The Alphaviral Capsid Protein Inhibits IRAK1-Dependent TLR Signaling.
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BioID2 proximity labelling from the Sindbis capsid protein identified an interaction with host IRAK1.
"between the alphaviral capsid protein and the host IRAK1 protein"
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The capsid-IRAK1 interaction is conserved across arthritogenic (SINV, Ross River, chikungunya) and encephalitic (EEEV, VEEV) alphaviruses.
"this capsid-IRAK1 interaction is conserved across multiple alphavirus species"
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The alphaviral capsid protein specifically inhibits IRAK1-dependent signalling, providing a route to evade innate immune detection before viral gene expression.
"the alphaviral capsid protein specifically inhibits"
VLDLR and ApoER2 are receptors for multiple alphaviruses.
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The E2-E1 glycoproteins of Semliki Forest virus, eastern equine encephalitis virus and Sindbis virus interact with the ligand-binding domains of VLDLR and ApoER2.
"eastern equine encephalitis virus and Sindbis virus interact with the"
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Ectopic expression of VLDLR or ApoER2 confers cellular attachment and internalization of alphavirus virus-like particles.
"cellular attachment, and internalization of virus-like particles"
Requirement of a functional ion channel for Sindbis virus glycoprotein transport, CPV-II formation, and efficient virus budding.
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6K has previously been shown to form cation-selective ion channels when inserted into planar lipid bilayers, via a transmembrane helix shared with TF.
"6K has been shown to form cation-selective ion channels when inserted into planar lipid bilayers"
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The Vpu channel blocker 5-N,N-hexamethylene amiloride significantly reduces SINV release, indicating that 6K's ion channel activity promotes virus budding.
"significantly reduces SINV release, suggesting that the ion channel activity of"
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Live imaging of miniSOG-tagged 6K with mCherry-E2 places 6K in the ER and on Golgi and post-Golgi vesicles together with E2 in the secretory pathway.
"6K and E2 colocalize on Golgi in the secretory pathway"
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In the absence of 6K, type II cytopathic vacuoles - which originate from the Golgi apparatus - are not detected, with a concomitant reduction in glycoprotein transport to the plasma membrane.
"CPV-II, which originates from the Golgi apparatus, is not detected in"
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The TF protein is produced by a (-1) programmed ribosomal frameshift at a heptanucleotide slip site in the 6K coding region - a property of the mRNA and the ribosome rather than an activity of the polyprotein.
"the TF protein produced by a (−1) programmed ribosomal frameshifting in a heptanucleotide slip site in the 6K coding region"
The T=4 envelope of Sindbis virus is organized by interactions with a complementary T=3 capsid.
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Cryo-electron microscopy of vitrified Sindbis particles at 35 A resolution shows columnar spike trimers on a T=4 lattice standing on a polyhedral lipid bilayer that surrounds the nucleocapsid, with 240 copies of each spike protein per virion.
"appear as columnar trimers arranged on a T=4 lattice. The lipid bilayer of the"
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The envelope lattice is complementary to the nucleocapsid, with spike trimers near the fivefold axes interacting tightly with capsid triplets and those on threefold axes more loosely.
"virus envelope is polyhedral and surrounds a smooth T=3 nucleocapsid."
Sindbis virus attachment: isolation and characterization of mutants with impaired binding to vertebrate cells.
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Insertion mutants NB1 and NB12 map near the PE2 cleavage site and NB2 between E2 residues 69 and 74; PE2 cleavage was completely or partially blocked in the former two.
"Insertion mutations for NB1 and NB12 were found"
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NB1 and NB2 are defective for binding to chicken embryo fibroblast and BHK-21 cells despite normal virion assembly and release, and mild trypsin digestion of NB1 virions cleaves PE2 and partially restores binding.
"NB2 were defective for binding to CEF and BHK-21 cells."
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PE2 cleavage and domains in the N-terminal portion of E2 are important determinants of alphavirus binding and penetration.
"Consistent with previous work, these results implicate PE2 cleavage"
Envelopments of Sindbis virus: synthesis and organization of proteins in cells infected with wild type and maturation-defective mutants.
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Lactoperoxidase-mediated surface iodination of wild-type-infected cells labels E1 and E2 in the same relative amounts as in iodinated virions, whereas PE2, though present in membranes, is never iodinatable at the surface.
"Iodine was incorporated into E1 and E2 on the surface"
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Cells infected with the maturation-defective mutant ts-20 display significant viral protein, mainly E1, at the plasma membrane by both ferritin-antibody labelling and surface iodination, while ts-23-infected cells display none.
"ts-20-infected cells had significant amounts of viral"
UniProtKB entry P03316 (POLS_SINDV), Sindbis virus structural polyprotein