Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Gene Ontology annotation based on curation of immunofluorescence data
Electronic Gene Ontology annotations created by ARBA machine learning models
Combined Automated Annotation using Multiple IEA Methods
PEX19 binds multiple peroxisomal membrane proteins, is predominantly cytoplasmic, and is required for peroxisome membrane synthesis.
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PEX19 binds a broad spectrum of PMPs
"PEX19 binds a broad spectrum of PMPs, displays saturable PMP binding, and interacts with regions of PMPs required for their targeting to peroxisomes."
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PEX19 is bimodally distributed between cytoplasm and peroxisome
"At steady state, PEX19 is bimodally distributed between the cytoplasm and peroxisome, with most of the protein in the cytoplasm."
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Loss of PEX19 results in degradation and mislocalization of PMPs
"the loss of PEX19 results in degradation of PMPs and/or mislocalization of PMPs to the mitochondrion."
Human adrenoleukodystrophy protein and related peroxisomal ABC transporters interact with the peroxisomal assembly protein PEX19p.
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PEX19 interacts with ALDP, ALDRP, and PMP70
"we identified the peroxin PEX19p as a novel interactor of ALDP, ALDRP, and PMP70."
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PEX19 is a cytosolic acceptor for peroxisomal ABC transporters
"Our data provide evidence that PEX19p is a cytosolic acceptor protein for the peroxisomal ABC transporters ALDP, PMP70, and ALDRP and might be involved in the intracellular sorting and trafficking of these proteins to the peroxisomal membrane."
Multiple distinct targeting signals in integral peroxisomal membrane proteins.
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PMP34 contains at least two nonoverlapping mPTS
"the metabolite transporter PMP34, an integral PMP, contains at least two nonoverlapping sets of targeting information, either of which is sufficient for insertion into the peroxisome membrane."
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PEX19 binds both minimal targeting regions of PMP34
"we demonstrate that PEX19, a factor required for peroxisomal membrane biogenesis, interacts with the two minimal targeting regions of PMP34."
Targeting elements in the amino-terminal part direct the human 70-kDa peroxisomal integral membrane protein (PMP70) to peroxisomes.
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PEX19 interactions are NOT required for targeting human PMP70 to peroxisomes
"peroxin 19 (PEX19) interactions are not required for targeting human PMP70 to peroxisomes."
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PEX19 does not specifically bind to the targeting elements of human PMP70
"PEX19 does not specifically bind to the targeting elements of human PMP70."
Two different targeting signals direct human peroxisomal membrane protein 22 to peroxisomes.
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Both PMP22 targeting regions interact with PEX19
"Both of these peroxisomal targeting regions interact with PEX19, a factor required for peroxisome membrane synthesis."
Analysis of mammalian peroxin interactions using a non-transcription-based bacterial two-hybrid assay.
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Farnesylation enhances PEX19 affinity for PEX13
"farnesylation, and not the CAAX motif, of Pex19p strongly enhances its affinity for Pex13p"
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CAAX motif enhances PEX19 affinity for PEX11beta
"the CAAXmotif, and not farnesylation, of Pex19p strongly enhances its affinity for Pex11pbeta"
Mammalian Pex14p: membrane topology and characterisation of the Pex14p-Pex14p interaction.
PEX19 is a predominantly cytosolic chaperone and import receptor for class 1 peroxisomal membrane proteins.
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PEX19 is a chaperone and import receptor for class 1 PMPs
"We show here that PEX19 has all of the properties one would expect for a bifunctional PMP chaperone/import receptor."
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PEX19 binds mPTS and stabilizes newly synthesized PMPs
"PEX19 binds and stabilizes newly synthesized PMPs in the cytosol, binds to multiple PMP targeting signals (mPTSs), interacts with the hydrophobic domains of PMP targeting signals, and is essential for PMP targeting and import."
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Two classes of mPTS defined - class 1 (PEX19-dependent) and class 2 (PEX19-independent)
"We also demonstrate the existence of two PMP import mechanisms and two classes of mPTSs: class 1 mPTSs, which are bound by PEX19 and imported in a PEX19-dependent manner, and class 2 mPTSs, which are not bound by PEX19 and mediate protein import independently of PEX19."
Towards a proteome-scale map of the human protein-protein interaction network.
In vitro transport of membrane proteins to peroxisomes by shuttling receptor Pex19p.
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PEX19 shuttles PMPs from cytosol to peroxisomes
"Pex19p translocates the membrane peroxins from the cytosol to peroxisomes in an ATP- and Pex3p-dependent manner and then shuttles back to the cytosol."
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Transport is ATP- and PEX3-dependent
"Cell-free synthesized, 35S-labeled Pex19p was targeted to subcellular fractions containing peroxisomes from Chinese hamster ovary-K1 cells as well as peroxisomes isolated from rat liver in an ATP-dependent manner."
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PEX19 recycles back to cytosol
"Peroxisome-associated and partly Na2CO3-resistant 35S-Pex19p was released to the cytosolic fraction upon incubation in the absence of ATP, whereas 35S-Pex16p and 35S-Pex26p remained in the membranes."
Role of Pex19p in the targeting of PMP70 to peroxisome.
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PEX19 keeps PMP70 soluble during translation
"When PMP70 was translated in the presence of purified Pex19p, a large part of PMP70 existed as soluble form and was co-immunoprecipitated with Pex19p."
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PMP70 aggregates in absence of PEX19
"in the absence of Pex19p, PMP70 formed aggregates during translation."
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PEX19 binds PMP70 co-translationally
"These results suggest that Pex19p binds to PMP70 co-translationally and keeps PMP70 as a proper conformation for the localization to peroxisome."
Targeting of the tail-anchored peroxisomal membrane proteins PEX26 and PEX15 occurs through C-terminal PEX19-binding sites.
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PEX26 contains two PEX19-binding sites
"Its C-terminal-targeting signal contains two binding sites for PEX19, the import receptor for several peroxisomal membrane proteins."
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PEX19 is essential for PEX26 import
"we show that PEX19 is essential for PEX26 import."
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C-terminal PEX19-binding sites mark tail-anchored proteins for peroxisomal delivery
"We conclude that C-terminal PEX19-binding sites mark tail-anchored proteins for delivery to peroxisomes."
Characterization of the interaction between recombinant human peroxin Pex3p and Pex19p: identification of TRP-104 IN Pex3p as a critical residue for the interaction.
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PEX3-PEX19 form a 1:1 complex
"Gel filtration chromatography analyses and intrinsic tryptophan fluorescence titrations revealed that a one-to-one complex is formed between monomeric Pex3p and monomeric Pex19p."
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Kd = 3.4 nM for wild-type interaction
"the wild-type and the W104A and W104F mutants showed K(D) values of 3.4 nm, 1080 nm, and 66.2 nm, respectively."
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Trp-104 of PEX3 is critical for PEX19 binding
"the indole ring of Trp-104 directly interacts with Pex19p to facilitate the specific peroxisomal translocation of the Pex19p-PMP complexes."
Targeting of hFis1 to peroxisomes is mediated by Pex19p.
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PEX19 mediates hFis1 targeting to peroxisomes
"Here we demonstrate for the first time that peroxisomal targeting of hFis1 depends on Pex19p, a peroxisomal membrane protein import factor."
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PEX19 knockdown reduces hFis1 peroxisomal targeting
"Silencing of Pex19p by small interference RNA reduced the targeting of hFis1 to peroxisomes, but not to mitochondria."
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Peroxisomal and mitochondrial targeting of hFis1 are independent events
"Our findings indicate that targeting of hFis1 to peroxisomes and mitochondria are independent events and support a direct, Pex19p-dependent targeting of peroxisomal tail-anchored proteins."
The peroxisomal membrane protein import receptor Pex3p is directly transported to peroxisomes by a novel Pex19p- and Pex16p-dependent pathway.
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PEX19 is a chaperone for full-length PEX3 in the cytosol
"We show here that Pex19p plays an essential role as the chaperone for full-length Pex3p in the cytosol."
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PEX19 knockdown inhibits PEX3 peroxisomal targeting
"Knockdown of Pex19p inhibits peroxisomal targeting of newly synthesized full-length Pex3p"
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PEX16 is the docking receptor for PEX3-PEX19 complexes
"Pex16p is the membrane receptor for Pex3p"
Structural basis for competitive interactions of Pex14 with the import receptors Pex5 and Pex19.
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PEX19 and PEX5 bind competitively to PEX14 N-terminal domain
"Pex5 and Pex19 ligand helices bind competitively to the same surface in Pex14(N) albeit with opposite directionality."
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PEX19 uses FxxxF motif (residues 66-77) to bind PEX14
"The molecular recognition involves conserved aromatic side chains in the Pex5 WxxxF/Y motif and a newly identified F/YFxxxF sequence in Pex19."
The cytosolic domain of PEX3, a protein involved in the biogenesis of peroxisomes, binds membrane lipids.
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PEX3 cytosolic domain binds membrane lipids
"a recombinant protein comprising the cytosolic domain of PEX3 can be purified in a soluble and monomeric form in the absence of detergents or other solubilizing agents."
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PEX19 interaction may modulate PEX3 lipid binding
"we tested this recombinant protein in lipid-binding assays and found that it interacts strongly with liposomes inducing their flocculation or even partial solubilization."
The peroxisomal receptor Pex19p forms a helical mPTS recognition domain.
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Crystal structure of PEX19 C-terminal mPTS recognition domain
"The crystal structure of the folded C-terminal part of the receptor reveals a globular domain that displays a bundle of three long helices in an antiparallel arrangement."
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Alpha-helical bundle binds mPTS with ~10 uM affinity
"the structured alpha-helical domain binds PMP-targeting signal (mPTS) sequences with about 10 muM affinity."
Structural basis for docking of peroxisomal membrane protein carrier Pex19p onto its receptor Pex3p.
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Crystal structure of PEX3-PEX19 complex
"we present the three-dimensional structure of the complex between a cytosolic domain of Pex3p and the binding-region peptide of Pex19p."
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PEX19 residues 1-44 form an alpha-helix upon PEX3 binding
"A 16-residue region of the Pex19p peptide forms an alpha-helix and makes a contact with Pex3p; this helix is disordered in the unbound state."
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Leucine triad and Phe29 are critical for binding
"The Pex19p peptide contains a characteristic motif, consisting of the leucine triad (Leu18, Leu21, Leu22), and Phe29, which are critical for the Pex3p binding and peroxisome biogenesis."
PEX14 is required for microtubule-based peroxisome motility in human cells.
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PEX19 identified in PEX14 complexes by mass spectrometry
"Using mass spectrometric analysis, almost all known human peroxins involved in protein import were identified as constituents of the PEX14 complexes."
A proteome-scale map of the human interactome network.
A massively parallel pipeline to clone DNA variants and examine molecular phenotypes of human disease mutations.
Pooled-matrix protein interaction screens using Barcode Fusion Genetics.
An inter-species protein-protein interaction network across vast evolutionary distance.
Architecture of the human interactome defines protein communities and disease networks.
LuTHy: a double-readout bioluminescence-based two-hybrid technology for quantitative mapping of protein-protein interactions in mammalian cells.
Maximizing binary interactome mapping with a minimal number of assays.
Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations.
A reference map of the human binary protein interactome.
Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains.
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
A multi-scale map of cell structure fusing protein images and interactions.
OpenCell: Endogenous tagging for the cartography of human cellular organization.
AI-guided pipeline for protein-protein interaction drug discovery identifies a SARS-CoV-2 inhibitor.
Systematic discovery of protein interaction interfaces using AlphaFold and experimental validation.
Multimodal cell maps as a foundation for structural and functional genomics.
Genomic organization and molecular characterization of a gene encoding HsPXF, a human peroxisomal farnesylated protein.
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PEX19 is farnesylated at C-terminal CaaX motif
"For the HsPXF protein, a carboxyterminal farnesylation at cysteine residues was demonstrated."
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Peroxisomal localization demonstrated
"Through the use of HsPXF-specific antibodies, the protein was shown to be attached to the outer surface of peroxisomes."
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Four splice variants identified
"we detected four splice variants originating either from exon skipping or from alternative splicing events."
PEX-19 docks ABCD1/D2/D3 to peroximal membrane
PEX3:PEX19:class I PMP dissociates
PEX19:class I PMP binds PEX3
PEX19 binds class I peroxisomal membrane proteins
PEX16:PEX19:Pex3 dissociates
Pex19p dampens the p19ARF-p53-p21WAF1 tumor suppressor pathway.
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PEX19 interacts with CDKN2A/p19ARF
"We isolated a 33-kDa protein, Pex19p/HK33/HsPXF, as a p19ARF-binding protein in a yeast two-hybrid screen."
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PEX19 excludes CDKN2A from nucleus
"Pex19p interacts with p19ARF in the cell cytoplasm and excludes p19ARF from the nucleus, leading to a concurrent inactivation of p53 function."
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Results in active degradation of TP53
"Down-regulation of Pex19p by its antisense expression resulted in increased levels of p19ARF, increased p53 function, and a p53/p21WAF1-mediated senescence-like cell cycle arrest."