Falcon (Edison Scientific) deep research report for algD (PP_1288 / Q88NC4) in Pseudomonas putida KT2440
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KT2440 deletion/transcriptome work assigns PP_1288 to the alginate biosynthetic locus and annotates it as algD / GDP-mannose 6-dehydrogenase.
"PP_1288 is explicitly annotated as algD (GDP-mannose 6-dehydrogenase)"
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AlgD is a cytosolic member of the UDP-glucose/GDP-mannose dehydrogenase family that catalyzes the precursor-forming step of alginate biosynthesis.
"AlgD (GDP-mannose 6-dehydrogenase; GMD) is a cytosolic enzyme in the **UDP-glucose/GDP-mannose dehydrogenase family** that catalyzes the **precursor-forming step** for bacterial alginate biosynthesis."
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AlgD catalyzes the irreversible oxidation of GDP-mannose to GDP-mannuronate, supplying the activated uronic-acid building block for alginate polymerization.
"AlgD catalyzes the **irreversible oxidation of GDP-mannose to GDP-mannuronate (GDP-mannuronic acid; GDP-ManA)**, supplying the activated uronic-acid building block used for polymer formation."
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The AlgD reaction is NAD+-dependent, with activity monitored by NADH formation.
"The reaction is **NAD+-dependent**, and activity is commonly monitored by **NADH formation** (A340)."
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algD/PP_1288 is significantly induced under water limitation in KT2440 (log2 fold-change 3.26 in wild type at 0.4 MPa matric potential).
"algD/PP_1288 is reported as significantly induced under water-limited conditions, with a reported **log2 fold-change of 3.26** in wild type at **0.4 MPa** matric potential"
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Pathway conservation places AlgD in the cytoplasmic precursor-synthesis stage, supporting cytosolic localization in KT2440.
"multiple authoritative descriptions of the pathway place AlgD function in the **cytoplasmic precursor synthesis stage** (GDP-mannuronate generation), upstream of membrane/periplasmic polymerization and export. This strongly supports a **cytosolic localization/function** for AlgD in KT2440 by pathway conservation."
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AlgD/GMD has an N-terminal domain binding NAD+ and GDP-mannose and a C-terminal domain with an essential catalytic cysteine.
"The enzyme is described as having an **N-terminal domain** that binds **NAD+ and GDP-mannose**, and a **C-terminal domain** containing an essential catalytic **cysteine** (reported as Cys268 in that article)."