Gene Ontology annotation through association of InterPro records with GO terms
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Automatic assignment of GO terms using logical inference, based on on inter-ontology links
Combined Automated Annotation using Multiple IEA Methods
Seed-specific overexpression of an endogenous Arabidopsis phytoene synthase gene results in delayed germination and increased levels of carotenoids, chlorophyll, and abscisic acid.
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Phytoene synthase condenses two GGPP molecules to phytoene and is rate limiting for carotenoid synthesis.
"Phytoene synthase catalyzes the dimerization of two molecules of geranylgeranyl pyrophosphate to phytoene and has been shown to be rate limiting for the synthesis of carotenoids."
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Seed-specific overexpression of the endogenous Arabidopsis PSY gene strongly increases seed carotenoids.
"In the present paper, we show that seed-specific overexpression of an endogenous Arabidopsis phytoene synthase gene results in significant increases of the levels of β-carotene, luteins, and violaxanthin."
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The overexpressed gene is the At5g17230 phytoene synthase cDNA of Scolnik and Bartley.
"An endogenous phytoene synthase was sequenced and cloned by RT-PCR from Arabidopsis homologous to the gene cloned by Scolnik and Bartley ( 1994 )."
Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.
Plastid localization of the key carotenoid enzyme phytoene synthase is altered by isozyme, allelic variation, and activity.
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Arabidopsis has a single PSY.
"Arabidopsis has only one At-PSY."
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Transiently expressed PSY fusions form speckles interpreted as plastoglobules.
"These PSYs localized to chloroplasts in specific fixed speckles, distributed inside the plastid and attached to areas that displayed red chlorophyll fluorescence indicative of prolamellar bodies or thylakoids."
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Speckles assigned to plastoglobules by co-localisation with a maize fibrillin.
"Merging of both signals confirmed colocalization of PSYs with Zm-PG2; thus, we consider the speckles to be plastoglobuli."
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The authors extend plastoglobule localisation to Arabidopsis PSY.
"Arabidopsis PSY localized to plastoglobules (as did maize PSY2 and 3 and rice PSY1, 2, and 3)."
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Sub-plastid location of PSY had not been detected by proteomics.
"Chloroplast suborganellar localization of the key pathway enzyme, PSY , has yet to be detected by proteomic analysis."
Arabidopsis OR proteins are the major posttranscriptional regulators of phytoene synthase in controlling carotenoid biosynthesis.
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PSY catalyses the committed step of carotenoid biosynthesis.
"Phytoene synthase (PSY) catalyzes the first committed step in carotenoid biosynthesis and controls carbon flux into the carotenoid biosynthetic pathway"
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PSY localises exclusively to chloroplasts.
"Among these proteins, PSY was the only one exclusively localized in chloroplasts as shown in a previous report ( 27 ) and the current study ( SI Appendix , Fig. S1 )."
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PSY interacts directly with AtOR and AtOR-like.
"Both Arabidopsis OR proteins interacted directly with PSY ( Fig. 1 A )."
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PSY activity is measurable in isolated chloroplast membranes and is increased by OR overexpression.
"PSY activity was about 50% higher in the AtOR -overexpressing lines than in WT."
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PSY-GFP is active in vivo, doubling phytoene in norflurazon-treated seedlings.
"Overexpression of PSY – GFP led to about a twofold increase of phytoene in NFZ-treated etiolated seedlings ( Fig. 4 C ), indicating that PSY – GFP functioned properly in the transgenic lines."
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Active PSY is membrane bound and depends on a separate GGPP synthase for substrate.
"Here PSY activity was exclusively found membrane bound and required addition of active GGPP synthase for in vitro assay."
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OR proteins are not molecular chaperones.
"Although the OR proteins carry a DnaJ cysteine-rich zinc figure domain, they are not molecular chaperones due to the lack of the DnaJ-like defining J domain."
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OR and OR-like are redundantly required for PSY protein accumulation.
"The results indicated that AtOR and AtOR-like were sufficient and required to regulate PSY protein levels in vivo, and that AtOR and AtOR-like were functionally redundant."
A Single Amino Acid Substitution in an ORANGE Protein Promotes Carotenoid Overaccumulation in Arabidopsis.
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PSY catalyses the condensation of two GGPP to phytoene.
"The first committed step in the carotenoid biosynthesis pathway is the condensation of two geranylgeranyl diphosphate molecules to phytoene catalyzed by phytoene synthase (PSY)."
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The AtOR(His) variant interacts with PSY in chloroplasts.
"Such interactions occurred in chloroplasts, consistent with the plastidial localizations of these proteins"
Arabidopsis FIBRILLIN6 influences carotenoid biosynthesis by directly promoting phytoene synthase activity.
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FBN6 co-immunoprecipitates with PSY.
"Arabidopsis FBN6 was found to be among the proteins co-immunoprecipitated with a GFP-tagged version of phytoene synthase (PSY), the first and main rate-determining enzyme of the carotenoid pathway (Welsch et al. 2018)."
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PSY is detected in envelope proteomes together with FBN6.
"FBN6 is the only FBN enriched in purified envelope fractions where PSY is also found (Ferro et al. 2010; Bouchnak et al. 2019)."
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PSY-GFP forms puncta in chloroplasts.
"When analyzing the co-immunoprecipitation assays, we noticed that the PSY-GFP protein concentrated in fluorescent dots within chloroplasts (Fig. 2A)."
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FBN6 and PSY co-localise in chloroplasts.
"indicating that FBN6 and PSY co-localize within chloroplasts, as expected for interacting proteins."
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Arabidopsis PSY complements a crtB-deficient E. coli carotenoid operon and is stimulated by FBN6.
"Strains co-transformed with such constructs harboring Arabidopsis PSY and FBN6 sequences were found to produce significantly more β-carotene than those expressing only PSY or co-expressing PSY and FBN4 (Fig. 3, B and C), despite that PSY protein levels remained very similar in all the cases (Fig. 3D)."
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PSY expression produces phytoene in planta, enhanced by FBN6.
"While phytoene was not detected in control or FBN6 samples, it was present in PSY samples, and it increased in samples agroinfiltrated with both FBN6 and PSY (Fig. 4A)."
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FBN6 binds PSY to promote its enzymatic activity.
"our data support the conclusion that FBN6 plays a physiologically relevant role in carotenoid biosynthesis in Arabidopsis chloroplasts by physically binding to PSY to promote its enzymatic activity."
Nucleotide sequence of an Arabidopsis cDNA for phytoene synthase.
UniProt entry PSY_ARATH (P37271)
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Curated catalytic activity is the Rhea 34475 phytoene synthase reaction.
"Xref=Rhea:RHEA:34475, ChEBI:CHEBI:27787,"
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Curated location is the chloroplast membrane (peripheral).
"SUBCELLULAR LOCATION: Plastid, chloroplast membrane"
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N-terminal chloroplast transit peptide.
"/note="Chloroplast""