Affinage mechanistic annotation for JAK1 (human) Affinage Affinage (Claude Sonnet reading pass + Opus synthesis pass) 35 citations

Affinage mechanistic annotation for JAK1 (human)

Current model (mechanistic narrative)

JAK1 is a non-receptor tyrosine kinase that serves as an obligate signaling hub for cytokine and interferon receptors, coupling receptor engagement to STAT activation across immune, hematopoietic, and developmental programs [PMID:8232552, PMID:28965767]. It is mutually dependent on partner kinases for interferon signaling — acting with TYK2 in the IFN-α/β pathway and with JAK2 in the IFN-γ pathway — where its activity and pseudokinase (JH2) domain are required for correct receptor complex assembly and STAT phosphorylation [PMID:8232552, PMID:9249040, PMID:31892268]. JAK1 function is non-redundant in vivo: conditional deletion impairs hematopoietic stem cell self-renewal, cytokine sensing, and NK cell development, and JAK2 cannot compensate for its loss [PMID:28965767, PMID:30671064]. Beyond canonical STAT signaling, JAK1 directly phosphorylates a defined set of substrates: PERK during ER stress to drive a PERK/JAK1/STAT3 axis PMID:25113558, SIRT1 at Y280/Y301 to enable SIRT1-STAT3 negative feedback PMID:29789426, and PD-L1 at Y112 to recruit STT3A and stabilize PD-L1 glycosylation, linking IL-6/JAK1 signaling to immune evasion PMID:31305264. JAK1 activity is tightly controlled by multiple layers: dephosphorylation by receptor-associated PTPs including TCPTP [PMID:9238016, PMID:18948751], proteasomal turnover modulated by SOCS1 competition (antagonized by EHBP1L1) PMID:36775874, HDAC1-dependent acetylation at K1109 PMID:39384195, and positive regulation by ZDHHC3/7-mediated palmitoylation that facilitates activation-loop transphosphorylation PMID:37356718. Its catalytic state is further shaped by activating hinge mutations that confer drug resistance PMID:21393331 and by a JAK1-selective allosteric cysteine (C817) in the pseudokinase domain that is targetable by electrophilic inhibitors PMID:36097295. Loss-of-function JAK1 mutations abrogate IFN-γ responsiveness and PD-L1 induction, mediating resistance to PD-1 blockade PMID:27903500, while biallelic missense mutations cause a human immune dysregulation phenotype with impaired cytokine signaling PMID:28008925.

Affinage mechanism profile (Affinage's own GO/Reactome grounding)

Dated findings (citation-anchored)

Year Confidence Finding PMIDs Journal
1993 High JAK1 is required for both interferon-alpha/beta and interferon-gamma signal transduction. A JAK1-deficient cell line was completely defective in interferon response; complementation with JAK1 restored signaling. JAK1 and TYK2 are mutually dependent in the IFN-α pathway, and JAK1 and JAK2 are mutually dependent in the IFN-γ pathway, likely reflecting a requirement for these kinases in correct assembly of interferon receptor complexes. PMID:8232552 Nature
1997 High Receptor-associated constitutive protein tyrosine phosphatase (PTP) activity controls JAK1 kinase function. Inhibition of PTP activity with pervanadate activates JAKs and leads to JAK1-dependent, IL-4Rα-mediated STAT6 activation independently of receptor dimerization. This indicates that constitutive PTP activity suppresses persistent receptor-linked JAK1 activity. PMID:9238016 Proceedings of the National Academy of Sciences of the United States of America
1997 Medium Kinase-deficient dominant-negative forms of JAK1 and TYK2 each independently inhibit IFN-α–induced STAT phosphorylation and transcriptional activation, establishing that JAK1 kinase activity is required upstream of TYK2 in the IFN-α signaling cascade. PMID:9249040 European journal of biochemistry
1997 Medium Jak1 kinase is required for a specific cell migration (epiboly) and anterior specification in zebrafish embryos. Injection of dominant-negative Jak1 RNA reduces epiboly and decreases goosecoid expression and anterior structures, establishing a developmental role for JAK1 beyond cytokine signaling. PMID:9096349 Proceedings of the National Academy of Sciences of the United States of America
1998 Medium Hepatitis B virus HBx protein specifically activates JAK1 (but not JAK2 or TYK2) through direct protein–protein interaction with JAK1, elevating JAK1 tyrosine phosphorylation and kinase activity, and subsequently activating STAT3 and STAT5. PMID:9738022 The Journal of biological chemistry
2003 High JAK1 is required for IFN-γ–mediated growth arrest and/or apoptosis of v-abl–transformed pre-B cells. JAK1-deficient transformed cells were more tumorigenic in vivo, and their increased tumorigenicity correlated with loss of IFN-γ responsiveness, establishing JAK1's role in intrinsic IFN-γ–dependent tumor surveillance rather than in promotion of tumorigenesis. PMID:12576323 Blood
2007 High JAK1 is required for myoblast proliferation and acts as a checkpoint preventing premature differentiation. JAK1 knockdown induces accelerated MyoD, MEF2, p21Cip1, and p27Kip1 induction and faster Id1 downregulation. Downstream, JAK1-STAT1-STAT3 constitutes the pathway through which LIF stimulates myoblast proliferation and represses differentiation. PMID:17908914 The Journal of cell biology
2008 Medium Myricetin directly binds to JAK1 (and STAT3) with higher affinity for JAK1 than STAT3, inhibiting JAK1 phosphorylation and EGF-induced cell transformation. Ex vivo and in vitro pull-down assays confirmed direct binding; myricetin inhibited JAK1 phosphorylation without affecting EGFR autophosphorylation. PMID:18995957 Cancer letters
2008 Medium TCPTP (protein tyrosine phosphatase) dephosphorylates and negatively regulates JAK1 and STAT3 signaling during the cell cycle. TCPTP-deficient MEFs show enhanced SFK, JAK1, and STAT3 activation; however, JAK1 and STAT3 (not SFK) signaling was not required for the enhanced G1/S transition observed. PMID:18948751 Cell cycle (Georgetown, Tex.)
2011 Medium Activating mutations in JAK1 at Phe958 and Pro960 (hinge region of kinase domain) render JAK1 constitutively active and resistant to ATP-competitive JAK inhibitors. These mutations can both activate JAK1 oncogenically and confer drug resistance. PMID:21393331 Haematologica
2014 Medium ER stress activates JAK1 in astrocytes in a PERK-dependent manner. JAK1 phosphorylates PERK, and this PERK/JAK1/STAT3 axis drives IL-6 and chemokine expression. Disruption of PERK abrogates ER stress–induced STAT3 activation. PMID:25113558 Molecular and cellular biology
2015 Medium CXCL12/CXCR4 signaling promotes immunological synapse formation and T cell activation through Gi and JAK1/JAK2 kinase activation, contributing to actin polymerization at the APC contact site and MTOC polarization. PMID:25917087 Journal of immunology
2016 High Loss-of-function JAK1 mutations in tumor cells result in inability to respond to interferon-gamma (IFN-γ), preventing IFN-γ–induced PD-L1 expression and interferon-stimulated gene induction, thereby mediating primary resistance to PD-1 blockade. PMID:27903500 Cancer discovery
2016 High Biallelic JAK1 missense mutations (P733L and P832S) cause reduced JAK1 and STAT phosphorylation following cytokine stimulation, reduced interferon-regulated gene induction, and dysregulated cytokine production. The P733L mutation is primarily responsible. Reconstitution experiments revealed a phosphorylation-independent role of JAK1 in signal transduction. PMID:28008925 Nature communications
2016 Medium AJUBA LIM protein binds specifically to the FERM domain of JAK1 to dissociate JAK1 from the IFN-γ receptor, inhibiting STAT1 phosphorylation and nuclear translocation, thereby suppressing the JAK1-STAT1-IFIT2 network and promoting cancer cell survival. PMID:27893714 Oncogene
2017 High Conditional Jak1 deletion in hematopoietic stem cells (HSCs) reduces self-renewal, alters lymphoid/myeloid differentiation, decreases competitiveness, prevents cell cycle entry in response to hematopoietic stress, and markedly reduces cytokine sensing including to type I interferons and IL-3. JAK2 constitutive activation cannot fully rescue JAK1 loss in HSCs. PMID:28965767 Cell stem cell
2018 High JAK1 phosphorylates SIRT1 at tyrosine residues Y280 and Y301 within the histone deacetylase catalytic domain in response to IL-6 stimulation. This phosphorylation does not alter SIRT1 deacetylase activity but is required for SIRT1 interaction with STAT3, enhancing SIRT1 suppression of STAT3 acetylation and transcriptional activity, constituting a negative feedback of the JAK1-STAT3 pathway. PMID:29789426 The Journal of biological chemistry
2019 High IL-6-activated JAK1 directly phosphorylates PD-L1 at Tyr112, which recruits the ER-associated N-glycosyltransferase STT3A to catalyze PD-L1 glycosylation and maintain PD-L1 stability, linking oncogenic IL-6/JAK1 signaling to immune evasion. PMID:31305264 The Journal of clinical investigation
2019 Medium JAK1 (not JAK2) is the STAT3-activating kinase mediating extrinsically activated STAT3 in TKI-treated CML stem cells, driven by IL-6. This was established using selective JAK1/2 inhibitors and genetic inactivation, and combined Bcr-Abl + JAK1 inhibition reduced CML stem cell colony formation and leukemic stem cells. PMID:30842608 Leukemia
2019 High Conditional deletion of JAK1 (but not JAK2) in NKp46+ NK cells markedly reduces NK cell numbers in bone marrow, spleen, blood, and liver, impairs NK cell development, and impairs NK cell–mediated tumor surveillance. JAK2 is dispensable for NK cell survival and cannot compensate for JAK1 loss. PMID:30671064 Frontiers in immunology
2019 Medium TROY (orphan TNF receptor) directly interacts with JAK1, increases JAK1 phosphorylation, and promotes STAT3 phosphorylation and transcriptional activity in a JAK1-dependent manner. JAK1 inhibition or knockdown significantly inhibits TROY-induced STAT3 activation, GBM cell migration, and temozolomide resistance. PMID:32629176 Neoplasia (New York, N.Y.)
2019 Medium The JAK1 pseudokinase domain (JH2) has distinct regulatory functions across different receptor complexes: in IL-2 signaling JAK1 is dominant over JAK3 and strictly requires both JH1 and JH2; in IFN-γ signaling both JAK1 and JAK2 are indispensable for STAT1 activation and JAK1 JH2 (rather than kinase activity) is the key requirement. Mutations in the JAK1 JH2 αC-helix (L633) reduce basal and cytokine-induced STAT activation. PMID:31892268 Cancers
2019 Medium TRAF6 negatively regulates JAK1 activation in IL-2 signaling by binding to the TRAF6-binding site on the IL-2R β-chain, which overlaps with the JAK1-binding site. A β-chain mutation that inactivates TRAF6 binding while retaining JAK1 binding abrogated TRAF6-dependent reduction in JAK1-Erk pathway activation. PMID:21155952 Genes to cells
2022 High Itaconate and 4-octyl itaconate (OI) directly modify JAK1 at multiple cysteine residues (C715, C816, C943, C1130) and inhibit JAK1 kinase activity and phosphorylation, suppressing M2 macrophage polarization in response to IL-4, IL-13, IFN-β, and IFN-γ in vitro and in vivo. PMID:35235776 Cell metabolism
2022 High JAK1 contains a druggable allosteric cysteine (C817) in its non-catalytic pseudokinase domain (absent from JAK2 and JAK3). Electrophilic compounds targeting C817 block JAK1-dependent trans-phosphorylation and cytokine signaling. Cells expressing a C817A JAK1 mutant are insensitive to these allosteric inhibitors, confirming C817 as the functional engagement site. PMID:36097295 Nature chemical biology
2022 High Influenza A virus PB2 protein targets mammalian JAK1 at lysine residues K859 and K860 for ubiquitination and proteasomal degradation, suppressing IFN-α/β signaling and STAT1/STAT2 activation as a mechanism of immune evasion. PMID:36271046 Nature communications
2022 Medium DPYSL2 (dihydropyrimidinase-like 2) directly interacts with JAK1, and this binding is required for activating STAT3 and subsequent vimentin expression, promoting breast cancer cell migration and metastasis. PMID:35575798 The Journal of cell biology
2022 Medium JAK1 directly interacts with TGF-β receptor I subunit (TβRI). Silencing JAK1 promotes myofibroblast transdifferentiation; this is mediated via constitutive STAT3 activation that requires JAK1. Silencing unphosphorylated STAT3 suppresses TGF-β signaling, SMAD3 activation, and ECM production, revealing a noncanonical JAK1/STAT3 regulatory axis in lung fibroblasts. PMID:36283961 American journal of physiology. Lung cellular and molecular physiology
2023 High HDAC1 deacetylates JAK1 at lysine 1109; HDAC inhibition (SAHA) increases JAK1 K1109 acetylation, promoting JAK1 proteasomal degradation and reducing STAT3-driven FGL1 transcription, thereby enhancing CD8+ T cell antitumor activity. PMID:39384195 Journal for immunotherapy of cancer
2023 Medium EHBP1L1 interacts with and stabilizes JAK1 protein by competing with SOCS1 for JAK1 binding, thereby protecting JAK1 from proteasomal degradation and maintaining elevated JAK1/STAT1/PD-L1 signaling in renal cell carcinoma. PMID:36775874 Advanced science
2023 High JAK1 is palmitoylated endogenously in dorsal root ganglion (DRG) neurons and in HEK293T cells. ZDHHC3 and ZDHHC7 are the dominant protein acyltransferases (PATs) for JAK1. Palmitoylation is critical for JAK1 kinase activity (even in vitro) and facilitates transphosphorylation of key activation loop sites, but minimally affects JAK1 localization in neurons. A leukemia-associated JAK1 mutation overrides palmitoylation-dependence of JAK1 activity. JAK1 palmitoylation is required for neuropoietic cytokine-dependent signaling and neuronal survival. PMID:37356718 The Journal of biological chemistry
2023 Medium METTL3 deposits m6A on the 3' UTR of JAK1 mRNA to promote JAK1 translation via YTHDF1 recognition, increasing JAK1 protein levels and contributing to STAT3 pathway activation and colorectal cancer progression. PMID:38001065 Cell death & disease
2023 Medium JAK1 kinase activity is required for HDV replication. JAK1 inhibition modulates ERK1/2 activation and S-HDAg (small hepatitis delta antigen) phosphorylation, which is crucial for viral replication. Co-immunoprecipitation confirmed JAK1 interaction within the HDV replication complex. PMID:37925078 Journal of hepatology
2024 Medium Chemotherapy-induced JAK1 activation occurs through an alternative mechanism: DNA damage induces JAK1-SQ phosphorylation that releases JAK1 pseudokinase domain (JH2) inhibition, allowing JAK1 activation without cytokine receptor engagement. This leads to STAT6 nuclear translocation and GAS6 secretion, activating TAM kinases to confer chemoresistance in Ewing sarcoma. PMID:38906855 Nature communications
2025 Medium STING acts downstream of IFN-α/β receptor (IFNAR) in endothelial cells and interacts directly with JAK1 upon IFN-I stimulation, promoting JAK1 phosphorylation. This interaction requires STING palmitoylation at Cysteine 91 but not the STING C-terminal tail (CTT) domain, and drives JAK1-STAT signaling for tumor vessel normalization and CD8+ T cell infiltration. PMID:39817453 The Journal of clinical investigation

Citations