Affinage mechanistic annotation for ANKRD13D (human) Affinage Affinage (Claude Sonnet reading pass + Opus synthesis pass) 1 citations

Affinage mechanistic annotation for ANKRD13D (human)

Current model (mechanistic narrative)

ANKRD13D is a ubiquitin-interacting motif (UIM)-containing scaffold protein that operates in the endocytic sorting of ligand-activated EGFR PMID:31985874. Its UIMs recognize Lys-63-linked ubiquitin chains on activated EGFR and mediate assembly of a transient ANKRD13D/RNF11/EGFR complex during early receptor endocytosis PMID:31985874. The same UIMs are required for the in vivo interaction with the E3 ligase RNF11, which occurs through an atypical binding mode that does not depend on ubiquitin modification of RNF11 itself PMID:31985874. Within this pathway, the ubiquitination state of ANKRD13 family members is set by ITCH and RNF11, which in turn tunes their ability to engage activated EGFR PMID:31985874. Beyond this scaffolding role in EGFR endocytosis, no further mechanistic detail for ANKRD13D has been characterized in the available corpus.

Affinage mechanism profile (Affinage's own GO/Reactome grounding)

Dated findings (citation-anchored)

Year Confidence Finding PMIDs Journal
2020 Medium ANKRD13D forms a complex with RNF11 (RING finger protein 11) in vivo, and the ubiquitin-interacting motifs (UIMs) of ANKRD13D are required for this complex formation; notably, ubiquitin modification of RNF11 is not required for the interaction with ANKRD13 family members (atypical UIM binding mode). PMID:31985874 The FEBS journal
2020 Medium ANKRD13D (along with ANKRD13A and ANKRD13B) acts as a molecular scaffold in the endocytic pathway: its UIMs recognize Lys-63-linked ubiquitin chains on ligand-activated EGFR, and the ANKRD13/RNF11/EGFR complex is transiently assembled during early receptor endocytosis; loss of ITCH or RNF11 respectively abrogates or increases ubiquitination of ANKRD13A, altering its ability to bind activated EGFR. PMID:31985874 The FEBS journal

Citations