CHMP5 PN Consistency Notes
- Generated: 2026-06-18
- Project: PROTEOSTASIS
- Scope: PN consistency rereview against local AIGR review and available deep-research artifacts
- UniProt: Q9NZZ3
- AIGR review status: COMPLETE
- Review batch: proteostasis-pr-1217 (PR 1217)
- Batch change status: added
Source Files Checked
Deep Research Files
- No
*-deep-research*.md file found in this gene directory.
AIGR Review Snapshot
- Description: CHMP5 encodes a SNF7-family ESCRT-III-associated regulatory protein that links LIP5/VTA1 to VPS4-dependent ESCRT-III recycling during endosomal multivesicular body sorting. CHMP5 is primarily cytosolic but functions at endosomal ESCRT assemblies, where CHMP5-LIP5/VTA1 interactions help tune VPS4 activation/disassembly and support MVB cargo sorting and lysosomal degradation of membrane proteins such as EGFR. Broader ESCRT contexts including cytokinesis, nuclear-envelope sealing, plasma membrane repair, viral budding, and autophagy are biologically plausible but secondary; infection-specific evidence supports CHMP5 involvement in anti-Shigella autophagy rather than a general CHMP5-specific autophagosome maturation mechanism.
- Existing/core annotation action counts: ACCEPT: 16; KEEP_AS_NON_CORE: 43; MARK_AS_OVER_ANNOTATED: 21; MODIFY: 4
PN Consistency Summary
- Consistency: Consistent. The review frames CHMP5 not as a polymerizing core subunit but as a SNF7-family ESCRT-III-associated regulator that links LIP5/VTA1 to VPS4 disassembly. Its description explicitly says evidence does not support a "general CHMP5-specific autophagosome maturation mechanism." PN's component-bucket placement and the review's regulatory framing are compatible; the review is appropriately more cautious than the PN's blanket "ESCRT-III complex component" label.
- PN story / NEW pressure: PN projects GO:0000045 autophagosome assembly (verified real). CHMP5 support is family/regulatory-inheritance only (autophagosome maturation is IEA/GO_REF:0000117, KEEP_AS_NON_CORE). A gene-specific GO:0000045 assertion would be over-reach; the review already captures the autophagy context as non-core and asks (suggested_question) which CHMP5 autophagy annotations rest on direct closure/maturation assays. PN over-reaches for CHMP5 — already captured; do not ADD.
- Evidence alignment: Divergent. PN cites only the Cells "Key Regulators of Autophagosome Closure" review. Review cites primary ESCRT/regulatory literature (incl. PMID:36107470 ESCRT-III-MIT interactome [verified, not the PN review], PMID:17984323). No shared specific citations; same broad theme.
- Verdict: Consistent; review appropriately conservative on the PN autophagy projection. Recommended edits: none.
Full Consistency Review
- UniProt: Q9NZZ3 · batch: proteostasis-pr-1217 · review status: COMPLETE
- PN placement:
ALP → Autophagosome closure maturation and lysosome fusion → Sealing of autophagophore membrane → ESCRT-III complex component AND ALP → Microautophagy → General microautophagy machinery → ESCRT-III complex component (2 rows; shared CHMP template)
- PN-node mapping: type → GO:0000815 ESCRT III complex (
already_in_goa_exact); "Sealing" group → GO:0000045 autophagosome assembly (more_specific_than_existing_goa); classes context_only/too_broad; branch no_mapping.
- Consistency: Consistent. The review frames CHMP5 not as a polymerizing core subunit but as a SNF7-family ESCRT-III-associated regulator that links LIP5/VTA1 to VPS4 disassembly. Its description explicitly says evidence does not support a "general CHMP5-specific autophagosome maturation mechanism." PN's component-bucket placement and the review's regulatory framing are compatible; the review is appropriately more cautious than the PN's blanket "ESCRT-III complex component" label.
- PN story / NEW pressure: PN projects GO:0000045 autophagosome assembly (verified real). CHMP5 support is family/regulatory-inheritance only (autophagosome maturation is IEA/GO_REF:0000117, KEEP_AS_NON_CORE). A gene-specific GO:0000045 assertion would be over-reach; the review already captures the autophagy context as non-core and asks (suggested_question) which CHMP5 autophagy annotations rest on direct closure/maturation assays. PN over-reaches for CHMP5 — already captured; do not ADD.
- Mapping strategy: No change. CHMP5's regulatory (LIP5/VPS4) role differs from the structural "ESCRT-III complex component" leaf; class-level
context_only is correct and the GO:0000815 leaf is the most CHMP5-defensible part of the projection.
- Evidence alignment: Divergent. PN cites only the Cells "Key Regulators of Autophagosome Closure" review. Review cites primary ESCRT/regulatory literature (incl. PMID:36107470 ESCRT-III-MIT interactome [verified, not the PN review], PMID:17984323). No shared specific citations; same broad theme.
- Verdict: Consistent; review appropriately conservative on the PN autophagy projection. Recommended edits: none.
PN Dossier Context
- review_batch: proteostasis-pr-1217
- review_yaml: genes/human/CHMP5/CHMP5-ai-review.yaml
- PN workbook rows: 2
PN row 1: Autophagy-Lysosome Pathway | Autophagosome closure maturation and lysosome fusion | Sealing of autophagophore membrane | ESCRT-III complex component
- UniProt: Q9NZZ3
- In branches: ALP
- Notes: Component of the ESCRT-III complex, involved in autophagosome closure
- PN references (titles):
- Cells | Free Full-Text | Key Regulators of Autophagosome Closure (mdpi.com)
- PN-node mapping records (path + ancestors):
- [type] Autophagy-Lysosome Pathway|Autophagosome closure maturation and lysosome fusion|Sealing of autophagophore membrane|ESCRT-III complex component
status=mapped scope=ok_for_propagation_to_go GO=[GO:0000815 ESCRT III complex]
rationale: This PN type is a structural component class for ESCRT-III factors used in autophagophore sealing. The matching GO cellular-component term is ESCRT III complex, which is more precise than the broader late-fusion process mapping.
- [group] Autophagy-Lysosome Pathway|Autophagosome closure maturation and lysosome fusion|Sealing of autophagophore membrane
status=mapped scope=ok_for_propagation_to_go GO=[GO:0000045 autophagosome assembly]
rationale: This group captures autophagophore closure/sealing, a late step in autophagosome assembly. Autophagosome assembly is the safer process target than autophagosome-lysosome fusion.
- [class] Autophagy-Lysosome Pathway|Autophagosome closure maturation and lysosome fusion
status=context_only scope=too_broad_to_propagate GO=[GO:0016236 macroautophagy]
rationale: This class is a late macroautophagy context, but the subtree mixes docking, fusion, localization, membrane-composition, and unknown late-stage roles. The class-level relation is useful for display while propagation is restricted to narrower mechanism nodes.
- [branch] Autophagy-Lysosome Pathway
status=no_mapping scope= GO=[]
rationale: Reviewed as the top-level PN branch. It is a project taxonomy umbrella rather than a direct GO assertion; all propagation must come from manually curated child nodes.
PN row 2: Autophagy-Lysosome Pathway | Microautophagy | General microautophagy machinery | ESCRT-III complex component
- UniProt: Q9NZZ3
- In branches: ALP
- PN-node mapping records (path + ancestors):
- [type] Autophagy-Lysosome Pathway|Microautophagy|General microautophagy machinery|ESCRT-III complex component
status=mapped scope=ok_for_propagation_to_go GO=[GO:0000815 ESCRT III complex]
rationale: This leaf is a component bucket for ESCRT-III machinery used in microautophagy contexts. The shared GO assertion is ESCRT III complex membership.
- [group] Autophagy-Lysosome Pathway|Microautophagy|General microautophagy machinery
status=no_mapping scope= GO=[]
rationale: Reviewed as a broad PN taxonomy container. The descendants mix components, regulators, context labels, and mechanistic leaves, so propagation should come only from narrower curated nodes.
- [class] Autophagy-Lysosome Pathway|Microautophagy
status=context_only scope=too_broad_to_propagate GO=[GO:0016237 microautophagy]
rationale: The class names a real GO process, but the subtree includes machinery components and mitochondrion-derived-vesicle contexts as well as process labels. Propagation is restricted to narrower nodes.
- [branch] Autophagy-Lysosome Pathway
status=no_mapping scope= GO=[]
rationale: Reviewed as the top-level PN branch. It is a project taxonomy umbrella rather than a direct GO assertion; all propagation must come from manually curated child nodes.
Projected GO annotations (3)
- GO:0000045 autophagosome assembly | scope=ok_for_propagation_to_go | goa_status=more_specific_than_existing_goa | from=Autophagy-Lysosome Pathway|Autophagosome closure maturation and lysosome fusion|Sealing of autophagophore membrane
- GO:0000815 ESCRT III complex | scope=ok_for_propagation_to_go | goa_status=already_in_goa_exact | from=Autophagy-Lysosome Pathway|Autophagosome closure maturation and lysosome fusion|Sealing of autophagophore membrane|ESCRT-III complex component
- GO:0000815 ESCRT III complex | scope=ok_for_propagation_to_go | goa_status=already_in_goa_exact | from=Autophagy-Lysosome Pathway|Microautophagy|General microautophagy machinery|ESCRT-III complex component
Note
This file is generated from the current PROTEOSTASIS phase-1 dossier and local gene-review artifacts. Edit the source review, PN mapping, or dossier rather than this generated note when correcting the underlying curation.