PKM (Pyruvate Kinase M) Notes - ISOFORMS Project

Key Isoform Biology

PKM encodes pyruvate kinase isoforms with fundamentally different metabolic properties - the M1/M2 switch is a hallmark of the Warburg effect in cancer.

Critical Isoforms: M1 vs M2

Isoform UniProt ID Synonym Activity Regulation Expression
PKM1 P14618-2 M1-PK HIGH constitutive Not allosteric ADULT muscle, brain, heart
PKM2 P14618-1 M2-PK LOW basal, activatable Allosteric (FBP) EMBRYONIC, proliferating, CANCER

The M1/M2 Splice Switch

Alternative splicing of mutually exclusive exons 9 and 10:
- Exon 9 → PKM1 (adult)
- Exon 10 → PKM2 (embryonic/cancer)

Controlled by hnRNP splicing factors (hnRNPA1, hnRNPA2, PTB).

Functional Differences

PKM1 (isoform 2):
- Constitutively active homotetramer
- High pyruvate kinase activity
- Efficient ATP generation via glycolysis
- Normal oxidative metabolism

PKM2 (isoform 1):
- Allosterically regulated by fructose-1,6-bisphosphate (FBP)
- Can exist as inactive monomer/dimer or active tetramer
- LOW activity allows glycolytic intermediates to accumulate
- Supports biosynthetic pathways (nucleotides, amino acids, lipids)
- Nuclear translocation: Can act as transcription coactivator

The Warburg Effect

Cancer cells switch from PKM1 to PKM2:
- LOW PKM2 activity → glycolytic intermediates diverted to biosynthesis
- Supports rapid proliferation
- PKM2 is nearly universal in cancer

PKM2 Non-Metabolic Functions

PKM2 has functions ABSENT from PKM1:
- Protein kinase activity - phosphorylates histones (H3Y11)
- Transcription coactivation - interacts with HIF-1α
- Nuclear functions - regulates gene expression

GOA Annotation Status

Expected Annotation Issues

  1. "Pyruvate kinase activity" - TRUE for both but M1 >> M2 activity
  2. "Protein kinase activity" - PKM2 ONLY, not PKM1
  3. "Nucleus" localization - PKM2 ONLY
  4. "Transcription coactivator activity" - PKM2 ONLY
  5. "Glycolytic process" - both, but different flux
  6. Any Warburg effect annotations should be PKM2-specific

Key References