GO_REF:0000002
Gene Ontology annotation through association of InterPro records with GO terms
GO_REF:0000008
Gene Ontology annotation by the MGI curatorial staff, curated orthology
GO_REF:0000033
Annotation inferences using phylogenetic trees
GO_REF:0000044
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping
GO_REF:0000096
Automated transfer of experimentally-verified manual GO annotation data to mouse-rat orthologs
GO_REF:0000119
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs
file:genes/mouse/Sox2/Sox2-deep-research-openai.md
Deep research report on mouse Sox2 function and mechanisms
UniProtKB:P48432
UniProt entry for mouse Sox2 transcription factor
PMID:12036291
Circling, deafness, and yellow coat displayed by yellow submarine (ysb) and light coat and circling (lcc) mice with mutations on chromosome 3.
PMID:12514105
Multipotent cell lineages in early mouse development depend on SOX2 function.
PMID:12665572
Fbx15 is a novel target of Oct3/4 but is dispensable for embryonic stem cell self-renewal and mouse development.
PMID:15082719
SOX7 and GATA-4 are competitive activators of Fgf-3 transcription.
PMID:15219627
Disturbing endoderm signaling to anterior neural plate of vertebrates by the teratogen cadmium.
PMID:15240551
Sox2 deficiency causes neurodegeneration and impaired neurogenesis in the adult mouse brain.
PMID:15781477
Sox2 induction by FGF and FGFR2 activating mutations inhibits Wnt signaling and osteoblast differentiation.
PMID:15846349
Sox2 is required for sensory organ development in the mammalian inner ear.
PMID:15863505
Differential roles for Sox15 and Sox2 in transcriptional control in mouse embryonic stem cells.
PMID:15988017
Reciprocal transcriptional regulation of Pou5f1 and Sox2 via the Oct4/Sox2 complex in embryonic stem cells.
PMID:16631155
Role of Sox2 in the development of the mouse neocortex.
PMID:16651659
SOX2 is a dose-dependent regulator of retinal neural progenitor competence.
PMID:16767105
Dissecting self-renewal in stem cells with RNA interference.
PMID:16932809
Mutations within Sox2/SOX2 are associated with abnormalities in the hypothalamo-pituitary-gonadal axis in mice and humans.
PMID:17015430
Sox2 is required for development of taste bud sensory cells.
PMID:17097055
Inhibition of DNA binding of Sox2 by the SUMO conjugation.
PMID:17140559
Sox2 and Pou2f1 interact to control lens and olfactory placode development.
PMID:17267691
Zic3 is required for maintenance of pluripotency in embryonic stem cells.
PMID:17507372
A dominant-negative form of mouse SOX2 induces trophectoderm differentiation and progressive polyploidy in mouse embryonic stem cells.
PMID:17522155
Multiple dose-dependent roles for Sox2 in the patterning and differentiation of anterior foregut endoderm.
PMID:17875931
Sox17 and Sox4 differentially regulate beta-catenin/T-cell factor activity and proliferation of colon carcinoma cells.
PMID:18287078
SOX2-expressing progenitor cells generate all of the major cell types in the adult mouse pituitary gland.
PMID:18374910
Sox2 is important for two crucial processes in lung development: branching morphogenesis and epithelial cell differentiation.
PMID:18400104
Detailed characterization of the mouse embryonic stem cell transcriptome reveals novel genes and intergenic splicing associated with pluripotency.
PMID:18448678
ES cell pluripotency and germ-layer formation require the SWI/SNF chromatin remodeling component BAF250a.
PMID:19139101
A positive regulatory role for the mSin3A-HDAC complex in pluripotency through Nanog and Sox2.
PMID:19328208
The structure of Sox17 bound to DNA reveals a conserved bending topology but selective protein interaction platforms.
PMID:19490090
Expression of Sox11 in adult neurogenic niches suggests a stage-specific role in adult neurogenesis.
PMID:19536159
The pluripotency factor Oct4 interacts with Ctcf and also controls X-chromosome pairing and counting.
PMID:19740739
Zfp206, Oct4, and Sox2 are integrated components of a transcriptional regulatory network in embryonic stem cells.
PMID:19796622
Uncovering early response of gene regulatory networks in ESCs by systematic induction of transcription factors.
PMID:19816951
Klf4 interacts directly with Oct4 and Sox2 to promote reprogramming.
PMID:20123909
Sox17 promotes differentiation in mouse embryonic stem cells by directly regulating extraembryonic gene expression and indirectly antagonizing self-renewal.
PMID:20362541
An Oct4-centered protein interaction network in embryonic stem cells.
PMID:20531390
Suppression of the novel ER protein Maxer by mutant ataxin-1 in Bergman glia contributes to non-cell-autonomous toxicity.
PMID:20720539
Mediator and cohesin connect gene expression and chromatin architecture.
PMID:21062744
Sall1 regulates embryonic stem cell differentiation in association with nanog.
PMID:21076177
Core transcription factors, Oct4, Sox2 and Nanog, individually form complexes with nucleophosmin (Npm1) to control embryonic stem (ES) cell fate determination.
PMID:21245162
Pluripotency factors regulate definitive endoderm specification through eomesodermin.
PMID:21300049
Cooperative functions of Hes/Hey genes in auditory hair cell and supporting cell development.
PMID:21874018
lincRNAs act in the circuitry controlling pluripotency and differentiation.
PMID:22198669
Ars2 maintains neural stem-cell identity through direct transcriptional activation of Sox2.
PMID:22232070
Genome-wide analysis of N1ICD/RBPJ targets in vivo reveals direct transcriptional regulation of Wnt, SHH, and hippo pathway effectors by Notch1.
PMID:22344693
Deciphering the Sox-Oct partner code by quantitative cooperativity measurements.
PMID:22513373
EYA1 and SIX1 drive the neuronal developmental program in cooperation with the SWI/SNF chromatin-remodeling complex and SOX2 in the mammalian inner ear.
PMID:22992956
Transcriptional regulatory networks in epiblast cells and during anterior neural plate development as modeled in epiblast stem cells.
PMID:23056351
The mammalian DM domain transcription factor Dmrta2 is required for early embryonic development of the cerebral cortex.
PMID:23108051
Cdk1 interplays with Oct4 to repress differentiation of embryonic stem cells into trophectoderm.
PMID:23169531
Co-motif discovery identifies an Esrrb-Sox2-DNA ternary complex as a mediator of transcriptional differences between mouse embryonic and epiblast stem cells.
PMID:23284756
Ascl1 (Mash1) knockout perturbs differentiation of nonneuronal cells in olfactory epithelium.
PMID:23447615
Paired related homeobox protein 1 is a regulator of stemness in adult neural stem/progenitor cells.
PMID:23798425
Acetylated histone H3K56 interacts with Oct4 to promote mouse embryonic stem cell pluripotency.
PMID:23892456
A direct physical interaction between Nanog and Sox2 regulates embryonic stem cell self-renewal.
PMID:24036311
CTR9/PAF1c regulates molecular lineage identity, histone H3K36 trimethylation and genomic imprinting during preimplantation development.
PMID:24191021
Sox9 plays multiple roles in the lung epithelium during branching morphogenesis.
PMID:24268575
Tsix RNA and the germline factor, PRDM14, link X reactivation and stem cell reprogramming.
PMID:25335925
Pwp1 is required for the differentiation potential of mouse embryonic stem cells through regulating Stat3 signaling.
PMID:25535395
Notch inhibition induces mitotically generated hair cells in mammalian cochleae via activating the Wnt pathway.
PMID:25901318
Functional and mechanistic studies of XPC DNA-repair complex as transcriptional coactivator in embryonic stem cells.
PMID:26005002
Expression patterns of long noncoding RNAs from Dlk1-Dio3 imprinted region and the potential mechanisms of Gtl2 activation during blastocyst development.
PMID:26523946
Combined Overexpression of JARID2, PRDM14, ESRRB, and SALL4A Dramatically Improves Efficiency and Kinetics of Reprogramming to Induced Pluripotent Stem Cells.
PMID:26691508
Physical Interactions and Functional Coordination between the Core Subunits of Set1/Mll Complexes and the Reprogramming Factors.
PMID:30442713
Proteolysis of methylated SOX2 protein is regulated by L3MBTL3 and CRL4(DCAF5) ubiquitin ligase.
PMID:31481660
Nucleoporin insufficiency disrupts a pluripotent regulatory circuit in a pro-arrhythmogenic stem cell line.
PMID:32127020
Tsukushi is essential for the development of the inner ear.
PMID:7590241
Developmental-specific activity of the FGF-4 enhancer requires the synergistic action of Sox2 and Oct-3.
PMID:7628452
Involvement of SOX proteins in lens-specific activation of crystallin genes.
PMID:8625802
A comparison of the properties of Sox-3 with Sry and two related genes, Sox-1 and Sox-2.
PMID:9512512
Sox1 directly regulates the gamma-crystallin genes and is essential for lens development in mice.
PMID:9649510
New POU dimer configuration mediates antagonistic control of an osteopontin preimplantation enhancer by Oct-4 and Sox-2.
PMID:9669521
Role of the transcription factor Sox-2 in the expression of the FGF-4 gene in embryonal carcinoma cells.
PMID:9851841
The amn gene product is required in extraembryonic tissues for the generation of middle primitive streak derivatives.
Reactome:R-MMU-9615549
Mecp2 and Sox2 bind Mir137 gene
Reactome:R-MMU-9832812
Expression of Sox2 in anterior neural plate
Reactome:R-MMU-9833004
Expression of Sox2 in posterior neural plate
file:mouse/Sox2/Sox2-deep-research-falcon.md
Falcon deep research report on mouse Sox2 function