GALE source guide

Biological interpretation

GALE is a cytosolic, NAD-bound homodimer with two reversible epimerase activities. It recycles UDP-glucose from UDP-galactose in the Leloir pathway and supplies UDP-galactose in the reverse direction for glycoconjugate synthesis. Its second activity interconverts UDP-GlcNAc and UDP-GalNAc. The latter is shared with endogenous fly GALE; it is not uniquely human (PMID:22654673). NAD binding is part of catalysis, rather than a separate core function. NADH generated by the coupled reporter in PMID:16302980 is not net consumption of NAD by GALE.

The broad galactose-metabolism and catabolism annotations are refined to the existing Leloir-pathway annotation through verified is_a edges: GO:0033499 → GO:0019388 → GO:0006012. The electronic InterPro/UniPathway mapping and human UniProt pathway statement are generic; a specific original UPA00214 definition was not recovered. Independent human enzyme evidence establishes the refinement. Reverse UDP-galactose supply remains explicit in the first catalytic core; no new biosynthetic process annotation is added. QuickGO currently names GO:0033499 “D-galactose catabolic process, Leloir pathway”; older cache labels remain historical.

Five self-interaction annotations are refined to the already accepted GO:0042803 protein homodimerization activity, an is_a descendant of GO:0042802. Human crosslinking and author-defined structural dimers establish the specific assembly. The individual GALE pair/clone tables of the five interaction screens were not inspected; no screen-specific stoichiometry, natural product or orthogonal validation is inferred. Two structured findings under PMID:16302980 hold the shared exact catalytic and crosslinking anchors. Rows and the core link to that reference without duplicating its excerpts.

Source access and experimental scope

Products and phylogenetic transfer

Official direct FASTAs identify Q14376-1 (348 residues) and Q14376-2 (274 residues). In the short product, canonical residues 1–79 are replaced by MSPLQ. The reviewed full-length and tagged constructs do not establish equivalent activity of that natural short product. Its missing canonical N-terminal contacts do not by themselves prove inactivity.

In the actual PTHR43725 tree, human Q14376 is AN338/PTN002536271 and its ungapped sequence exactly matches canonical GALE. Activity and cytosol originate at AN287/PTN000041817; Leloir participation originates at AN323/PTN000821420. All origins lie on the target lineage. The two retained activity losses, PTN002886021 and PTN001621994, are off that lineage. Target self-donor evidence is valid grounding, and donor count is not an evidence score. The mouse Q8R059 donor GOA supports the ortholog context; its individual primary papers were not read.

Evidence preservation

The compact source evidence links immutable Git versions of the full original review, journal, 21 old quote/claim associations and complete raw/native mapping. These records remain recoverable without embedding a second full review or repeated raw annotation arrays. The original journal remains the unchanged prefix of GALE notes. Title-only and dataset-wide snippets remain historical, rather than serving as target-specific evidence. The current review holds four exact excerpts; the source-evidence ledger records byte offsets and hashes without repeating their text. All 38 normal sources remain unchanged.