Gene Ontology annotation through association of InterPro records with GO terms
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Combined Automated Annotation using Multiple IEA Methods
Compartmentalization of phage phi29 DNA replication: interaction between the primer terminal protein and the membrane-associated protein p1.
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Protein p1 is membrane associated in infected Bacillus subtilis cells, and the C-terminal region is required for that association, since p1DeltaC43 neither associates with membranes in vivo nor self-interacts in vitro.
"C-terminally truncated p1 protein that neither associates with membranes in vivo"
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p1 binds the primer terminal protein through a region outside the membrane-association and self-assembly determinants, since the truncated p1DeltaC43 still interacts with the terminal protein in vitro.
"can interact with the primer terminal protein (TP)"
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p1 levels set the rate of phi29 DNA replication in vivo in a dosage-dependent manner, and the proposed model is that the viral replisome attaches to a membrane-associated p1-based structure.
"attaches to a membrane-associated p1-based structure."
In vivo assembly of phage phi 29 replication protein p1 into membrane-associated multimeric structures.
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p1 is amphiphilic despite lacking a transmembrane segment, has a peripheral subcellular location by immunoelectron microscopy, and assembles in infected cells into multimers associated with the bacterial membrane.
"cells into multimeric structures that are associated with the bacterial"
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The membrane-associated p1 structures pre-assemble independently of the other replisome components and are functional, since plasmid-encoded p1 supports replication of a p1-lacking mutant phage.
"and supports DNA replication of a p1-lacking mutant phage, suggesting that the"
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p1 enhances the rate of in vivo viral DNA replication, and the proposed role of the membrane-assembled phage structure is to provide a specific site for phi29 DNA replication.
"assembled on the cell membrane provides a specific site for 29 DNA replication."
Bacillus subtilis phage phi29. Characterization of gene products and functions.
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Mutants in six phi29 cistrons fail to synthesise phage DNA under restrictive conditions. The full text identifies them as cistrons 1, 2, 3, 5, 6 and 17, and lists sus1(629) among the mutants that did not synthesise phage DNA, so gene 1 is individually named rather than only covered by the count.
"Mutants in six genes do not synthesize phage DNA."
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Protein products were assigned to ten of the seventeen phi29 cistrons, and the full text places the gene 1 product among the early proteins of the DNA-synthesis cistrons.
"protein products of 10 out of the 17 cistrons detected in the genome of phage"
Characterization, overproduction and purification of the product of gene 1 of Bacillus subtilis phage phi 29.
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Unit-length phi29 DNA is not synthesised on restrictive infection with sus1(629), showing that p1 is needed for viral DNA replication.
"29 protein p1 is needed for the viral DNA replication."
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The sus1(629) mutation is an ochre codon in ORF-6, which identifies ORF-6 as gene 1 and so ties the sus1 allele used in the 1976 mutant survey to this locus.
"indicating that this ORF corresponds to gene 1."
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Gene 1 yields two products, a 10 kDa protein and a 6 kDa form named delta-1 that arises from an internal in-phase initiation event in the same open reading frame.
"corresponds to an internal in-phase initiation event in ORF-6."
Initiation of bacteriophage phi29 DNA replication in vivo: assembly of a membrane-associated multiprotein complex.
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Membrane association of p1 requires its hydrophobic C-terminus, since deleting the C-terminal 43 residues abolishes it.
"association of protein p1 with membranes was abolished when the C-terminal 43"
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p1, free terminal protein and a fraction of the viral DNA polymerase are recovered together in membrane fractions of infected cells, supporting a membrane-associated multiprotein initiation complex.
"role of protein p1 for in vivo phi29 DNA replication, led us to conclude that a"
Polymerization of bacteriophage phi 29 replication protein p1 into protofilament sheets.
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p1 self-associates into long protofilaments that pack into highly ordered two-dimensional sheets resembling eukaryotic tubulin and bacterial FtsZ polymers.
"protofilaments that associated in a highly ordered, parallel array forming large"
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The authors conclude that p1 is a component of a viral-encoded, membrane-associated structure that provides the anchoring site for the viral replication machinery, and that p1 influences the rate of phi29 DNA synthesis in a temperature-dependent manner.
"anchoring site for the viral DNA replication machinery."
A single amino acid substitution within a coiled-coil motif changes the assembly of a 53-amino acid protein from two-dimensional sheets to filamentous structures.
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Within the coiled-coil region of p1, residues Leu-46, Met-53 and Leu-60 - but not Leu-39 - are each required for assembly into protofilament sheets, and replacing Leu-46 with Val switches the assembly pathway to 10 nm filaments.
"demonstrate that residues Leu(46), Met(53), and Leu(60), but not Leu(39), are"
Gene 1, one of the dna genes of bacteriophage phi 29, represses other dna genes through binding to mRNA.
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gp1 represses expression of the upstream dna genes for the DNA polymerase and the primer protein without changing the amount, size or integrity of the polycistronic mRNA, indicating a post-transcriptional mechanism.
"of the polycistronic mRNA were not influenced by the presence of gene 1."
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Histidine-tagged gp1 binds RNA in vitro, and the authors conclude that translation of the dna genes is affected by gp1 binding to their mRNA.
"the RNA binding ability of gp1 was demonstrated by in vitro system"
Effects of single amino acid substitutions at the predicted coiled-coil or hydrophobic region on the self-assembly of phi29 replication protein, gp1.
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Single substitutions in the predicted coiled-coil or hydrophobic regions block formation of large gp1 complexes, and self-association is proposed to be needed for efficient RNA binding and translational repression.
"to be necessary for the efficient binding to RNA and the translational"
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gp1 suppresses synthesis of the phi29 DNA polymerase and primer protein post-transcriptionally.
"suppresses the synthesis of phi29 DNA polymerase and primer protein in the"
Phage 29 phi protein p1 promotes replication by associating with the FtsZ ring of the divisome in Bacillus subtilis.
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A functional p1-YFP fusion localises to midcell independently of other phage proteins, colocalises with host FtsZ, and loses midcell localisation in cells not expressing FtsZ, while depletion of PBP2B has no effect.
"protein p1 colocalizes with the B. subtilis cell division protein FtsZ and"
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In the absence of p1, phage DNA replication is impaired, and phi29 DNA accumulates to higher levels in elongated Bacillus subtilis cells.
"protein p1, phage 29 DNA replication is impaired."
UniProtKB entry P03679 (GP1_BPPH2), DNA replication protein 1, Bacillus phage phi29
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The curated FUNCTION statement describes p1 as assembling into highly ordered structures that provide a specific site for viral DNA replication and probably anchor the viral replisome to the host membrane, with experimental evidence tags for four publications.
"provides a specific site for viral DNA replication."
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The subcellular location is the host membrane, as a peripheral membrane protein, and the hydrophobic C-terminus is the determinant of host-membrane association.
"SUBCELLULAR LOCATION: Host membrane"
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The entry records two products of the same open reading frame by alternative initiation, a 10 kDa Long form and a 6 kDa Short form (delta-1) missing residues 1-34.
"Event=Alternative initiation; Named isoforms=2;"