Gene Ontology annotation through association of InterPro records with GO terms
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Electronic Gene Ontology annotations created by ARBA machine learning models
Combined Automated Annotation using Multiple IEA Methods
KIAA1363-A Multifunctional Enzyme in Xenobiotic Detoxification and Lipid Ester Hydrolysis.
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The AADAC family has five human members and only two of them, AADAC and AADACL1/KIAA1363/NCEH1, have been functionally characterised; AADACL2, AADACL3 and AADACL4 have no assigned function in the literature.
"all other members of the AADACL protein family, AADACL2, AADACL3, and AADACL4, have so far been only poorly investigated and no functional roles can be concluded"
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AADAC, the family's name-giving member, is a type II membrane glycoprotein anchored in the ER with its catalytic domain in the lumen. This is the topology whose N-terminal signal anchor is the source of the propagated membrane annotation on AADACL2.
"AADAC is a type II membrane glycoprotein, facing with its active side to the lumen of the endoplasmic reticulum (ER)"
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The family straddles bond types - AADAC hydrolyses both amide bonds of xenobiotic arylacetamides and ester bonds of endogenous diglycerides - so predicting a carboxylic ester hydrolase activity for AADACL2 from family membership does not exclude amidase activity.
"AADAC, is known to hydrolyze amide and ester bonds of a number of xenobiotic substances, as well as clinical drugs and of endogenous lipid substrates such as diglycerides"
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The catalytic domains of both characterised family members are structurally homologous to hormone-sensitive lipase, which places AADACL2 in the GDXG/HSL-like branch of the alpha/beta-hydrolase fold.
"the conserved structural homologies of the catalytic domain of KIAA1363, as well as AADAC to that of HSL"
Genetic Study on Small Insertions and Deletions in Psoriasis Reveals a Role in Complex Human Diseases.
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An exome-wide insertion/deletion screen in 32,043 Chinese Han individuals named AADACL2 among previously unreported psoriasis susceptibility genes. This is a genetic association only, with no functional follow-up, but it is tissue-coherent with the gene's skin-restricted expression.
"identified KIAA0319, RELN, NCAPG, ABO, AADACL2, LMAN1, FLG, HERC5, CCDC66, LEKR1, AFF3, ABCG2, ANXA7, SYTL2,GIPR, METTL1, and FYCO1 as unreported genes for psoriasis"
Novel functional insights into ischemic stroke biology provided by the first genome-wide association study of stroke in indigenous Africans.
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A genome-wide association study of ischemic stroke in West African populations found genome-wide significant signals near AADACL2 on chromosome 3, reported as protective and novel. The association is to a neighbouring locus rather than to the coding sequence.
"We observed genome-wide significant (P-value < 5.0E-8) SNPs associations near AADACL2 and miRNA (MIR5186) genes in chromosome 3"
The full-ORF clone resource of the German cDNA Consortium.
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
The DNA sequence, annotation and analysis of human chromosome 3.
Affinage mechanistic annotation for AADACL2 (human)
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The affinage record for AADACL2 is empty - zero discoveries and zero citations - despite passing its own quality gates. Consistent with the absence of any functional literature, but treated here as a lead rather than as evidence, and checked independently against PubMed and the UniProt reference list.
"No mechanistic discoveries found in literature."
AADACL2: is the esterase call founded, and which of its two localisations is?
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The catalytic apparatus is intact and independently corroborated. Eight of the fifteen WITH/FROM sources with annotated active sites - the seven closest by identity plus Mycobacterium tuberculosis LipN - map all three of their catalytic residues onto AADACL2's own annotated Ser189, Asp341 and His371. Those eight are human, mouse and rat AADAC, mouse Nceh1, the three M. tuberculosis carboxylesterases NlhH, LipI and LipN, and Arabidopsis CXE18. Every source that fails is at 26.5 percent identity or below, where global alignment loses register, so the failures are not evidence of residue loss.
"Eight of the fifteen sources with annotated active sites map all three residues onto AADACL2's own annotated triad"
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Of the 14 reviewed UniProtKB entries carrying the IPR017157 family signature that generated the membrane annotation, 12 have a transmembrane segment - 11 of them annotated as a type-II signal anchor - and AADACL2 is the only one whose equivalent segment is annotated as a cleaved signal peptide, so the membrane call transfers a feature the target record says it lacks.
"So the membrane claim is a transfer of a feature that AADACL2's own record says it does not have."
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The sequence nevertheless does not settle the topology. The annotated cleavage site puts histidine at -1, which signal peptidase I does not accept, and AADACL2's N-terminal hydrophobic core scores higher on peak Kyte-Doolittle hydropathy (1.94) than AADAC's experimentally validated type-II signal anchor (1.81).
"Hydropathy cannot distinguish them, and the N-termini are homologous"
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Mass spectrometry cannot adjudicate the topology either. All four observed peptides lie in the catalytic domain, the earliest starting at residue 124, so none spans the annotated cleavage site or begins at the putative mature N-terminus.
"No peptide spans the annotated cleavage site and none starts at the putative mature N-terminus (residue 19)."
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The PANTHER node placement is inverted with respect to what transfers safely - the well-conserved mechanistic activity sits only at ortholog-specific nodes while the poorly-conserved localisation sits at the shared family node, so moving GO:0017171 down and dropping GO:0016020 would correct AADACL2, AADACL3 and AADACL4 together.
"Moving the activity down to the family node and dropping the localisation from it would fix three human genes at once."
PANTHER node PTN009058710: which GO term is true of every donor? (shared node-level audit for AADACL2, AADACL3 and AADACL4)
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No candidate term below GO:0016787 survives every donor of PTN009058710, so the generic term PAINT chose is the exact least common ancestor of the donor set rather than an under-specific approximation to it.
"No donor refutes `GO:0016787`, and every more specific candidate is refuted by at least one donor."
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The two more specific candidates fail on different axes: the two kynurenine formamidases put GO:0052689 out of reach, and soybean HIDH's threonine nucleophile puts GO:0017171 out of reach.
"GO:0052689 carboxylic ester hydrolase activity: TRUE 14, FALSE 2, UNDETERMINED 0"
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Soybean HIDH is bifunctional rather than a pure lyase, holding an IDA carboxylesterase annotation as well as its dehydratase activity, so it does not threaten the hydrolase parent at all.
"So HIDH is a genuine, if physiologically minor, carboxylic-ester hydrolase; it refutes the *serine* term only."
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The mechanism term is true of every donor PAINT cites at the family node PTN009058713 and held by IDA in all three of them, which is where it should be placed instead of at the deep node.
"all three carry `GO:0017171` by IDA"
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The Thr164 call that the mechanism verdict turns on is a fold-position inference rather than a UniProt nucleophile label, but the elbow pentapeptide corroborates it at the sequence level and a sensitivity analysis shows the verdict does not depend on it.
"only_the_refuting_donor_undetermined: TRUE 15, FALSE 0, UNDETERMINED 1, true_of_every_donor=False"
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The identity of the WITH/FROM set across all three paralogs is measured rather than assumed, from two independent sources for every gene.
"That equality is **measured for all three genes, not assumed for any of them**"
UniProtKB entry Q6P093 (ADCL2_HUMAN), Arylacetamide deacetylase-like 2
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The protein carries a complete serine-hydrolase catalytic triad, with the nucleophile at Ser189 in a GDSSG elbow, plus an oxyanion-hole motif at 111-113 and a conserved Cys116-Cys338 disulfide.
"FT ACT_SITE 189"
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UniProt assigns AADACL2 to the GDXG lipolytic enzyme family, the hormone-sensitive-lipase-like branch of the alpha/beta-hydrolase fold, and gives it the incomplete EC number 3.1.1.- rather than a specific reaction.
"CC -!- SIMILARITY: Belongs to the 'GDXG' lipolytic enzyme family."
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The subcellular location is given as Secreted with no evidence tag, and rests on a predicted cleaved signal peptide covering residues 1-18.
"FT SIGNAL 1..18"
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Expression is skin-enriched, and the protein is detected at the protein level, but it remains pharmacologically undrugged and uncharacterised (Pharos Tdark).
"DR HPA; ENSG00000197953; Tissue enriched (skin)."
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Isoform 2 is expected to be degraded by nonsense-mediated decay and truncates before the catalytic serine, so it cannot carry the family activity.
"premature stop codon in the mRNA, leading to nonsense-mediated mRNA"