file:ARATH/PIF3/PIF3-deep-research-falcon.md
Falcon/Edison deep research report: PIF3
GO_REF:0000002
Gene Ontology annotation through association of InterPro records with GO terms
GO_REF:0000117
Electronic Gene Ontology annotations created by ARBA machine learning models
GO_REF:0000120
Combined Automated Annotation using Multiple IEA Methods
GO_REF:0000122
AtSubP analysis
PMID:10318970
poc1: an Arabidopsis mutant perturbed in phytochrome signaling because of a T DNA insertion in the promoter of PIF3, a gene encoding a phytochrome-interacting bHLH protein.
PMID:10466729
Binding of phytochrome B to its nuclear signalling partner PIF3 is reversibly induced by light.
PMID:10995393
HFR1 encodes an atypical bHLH protein that acts in phytochrome A signal transduction.
PMID:11069292
Phytochrome B binds with greater apparent affinity than phytochrome A to the basic helix-loop-helix factor PIF3 in a reaction requiring the PAS domain of PIF3.
PMID:11118137
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
PMID:12006496
PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis.
PMID:12679534
The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
PMID:12826627
A Link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana.
PMID:12897250
The Arabidopsis basic/helix-loop-helix transcription factor family.
PMID:15155879
Constitutive photomorphogenesis 1 and multiple photoreceptors control degradation of phytochrome interacting factor 3, a transcription factor required for light signaling in Arabidopsis.
PMID:15448264
Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis.
PMID:15486100
A novel molecular recognition motif necessary for targeting photoactivated phytochrome signaling to specific basic helix-loop-helix transcription factors.
PMID:15486102
PIL5, a phytochrome-interacting basic helix-loop-helix protein, is a key negative regulator of seed germination in Arabidopsis thaliana.
PMID:16055924
Functional characterization of phytochrome interacting factor 3 for the Arabidopsis thaliana circadian clockwork.
PMID:17319847
PIF3 regulates anthocyanin biosynthesis in an HY5-dependent manner with both factors directly binding anthocyanin biosynthetic gene promoters in Arabidopsis.
PMID:18053005
Gibberellins modulate light signaling pathways to prevent Arabidopsis seedling de-etiolation in darkness.
PMID:18216856
Coordinated regulation of Arabidopsis thaliana development by light and gibberellins.
PMID:18216857
A molecular framework for light and gibberellin control of cell elongation.
PMID:18252845
The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels.
PMID:18728185
Genetically encoded photoswitching of actin assembly through the Cdc42-WASP-Arp2/3 complex pathway.
PMID:19286967
Obligate heterodimerization of Arabidopsis phytochromes C and E and interaction with the PIF3 basic helix-loop-helix transcription factor.
PMID:21928113
Dimerization and blue light regulation of PIF1 interacting bHLH proteins in Arabidopsis.
PMID:22904146
The phytochrome-interacting vascular plant one-zinc finger1 and VOZ2 redundantly regulate flowering in Arabidopsis.
PMID:23548744
PHYTOCHROME INTERACTING FACTOR3 associates with the histone deacetylase HDA15 in repression of chlorophyll biosynthesis and photosynthesis in etiolated Arabidopsis seedlings.
PMID:23708772
Phytochrome-interacting factors have both shared and distinct biological roles.
PMID:25944101
HEMERA Couples the Proteolysis and Transcriptional Activity of PHYTOCHROME INTERACTING FACTORs in Arabidopsis Photomorphogenesis.
PMID:27143545
Phytochrome-interacting ankyrin repeat protein 2 modulates phytochrome A-mediated PIF3 phosphorylation in light signal transduction.
PMID:27923776
Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors.
PMID:28174592
Integration of Ethylene and Light Signaling Affects Hypocotyl Growth in Arabidopsis.
PMID:29167353
Coordinated Regulation of Hypocotyl Cell Elongation by Light and Ethylene through a Microtubule Destabilizing Protein.
PMID:31527236
Arabidopsis PP6 phosphatases dephosphorylate PIF proteins to repress photomorphogenesis.
PMID:31638649
Submergence stress-induced hypocotyl elongation through ethylene signaling-mediated regulation of cortical microtubules in Arabidopsis.
PMID:31732705
PHYTOCHROME INTERACTING FACTOR8 Inhibits Phytochrome A-Mediated Far-Red Light Responses in Arabidopsis.
PMID:9845368
PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein.