Gene Ontology annotation through association of InterPro records with GO terms
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on curation of immunofluorescence data
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
Automatic Gene Ontology annotation based on Rhea mapping
Electronic Gene Ontology annotations created by ARBA machine learning models
Combined Automated Annotation using Multiple IEA Methods
Localization of a putative transcriptional regulator (ATRX) at pericentromeric heterochromatin and the short arms of acrocentric chromosomes.
Cell cycle-dependent phosphorylation of the ATRX protein correlates with changes in nuclear matrix and chromatin association.
Mutations in ATRX, encoding a SWI/SNF-like protein, cause diverse changes in the pattern of DNA methylation.
The ATRX syndrome protein forms a chromatin-remodeling complex with Daxx and localizes in promyelocytic leukemia nuclear bodies.
The mammalian heterochromatin protein 1 binds diverse nuclear proteins through a common motif that targets the chromoshadow domain.
Interaction between chromatin proteins MECP2 and ATRX is disrupted by mutations that cause inherited mental retardation.
Distinct factors control histone variant H3.3 localization at specific genomic regions.
Daxx is an H3.3-specific histone chaperone and cooperates with ATRX in replication-independent chromatin assembly at telomeres.
The ATRX-ADD domain binds to H3 tail peptides and reads the combined methylation state of K4 and K9.
EBV tegument protein BNRF1 disrupts DAXX-ATRX to activate viral early gene transcription.
ATRX-mediated chromatin association of histone variant macroH2A1 regulates α-globin expression.
ATRX dysfunction induces replication defects in primary mouse cells.
Human-chromatin-related protein interactions identify a demethylase complex required for chromosome segregation.
ATRX directs binding of PRC2 to Xist RNA and Polycomb targets.
Genetic Inactivation of ATRX Leads to a Decrease in the Amount of Telomeric Cohesin and Level of Telomere Transcription in Human Glioma Cells.
The Daxx/Atrx Complex Protects Tandem Repetitive Elements during DNA Hypomethylation by Promoting H3K9 Trimethylation.
Loss of ATRX Suppresses Resolution of Telomere Cohesion to Control Recombination in ALT Cancer Cells.
A human interactome in three quantitative dimensions organized by stoichiometries and abundances.
ATRX binds to atypical chromatin domains at the 3' exons of zinc finger genes to preserve H3K9me3 enrichment.
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
Mutations in a putative global transcriptional regulator cause X-linked mental retardation with alpha-thalassemia (ATR-X syndrome).
Cloning and characterization of a new human Xq13 gene, encoding a putative helicase.
ATRX:DAXX binds to subtelomeric chromosomal regions
Histone H3.3 deposition at telomere
Defective ATRX does not bind DAXX
Defective DAXX does not bind ATRX
A conserved truncated isoform of the ATR-X syndrome protein lacking the SWI/SNF-homology domain.
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A conserved truncated ATRX product lacks the SWI/SNF motifs and differs from full-length ATRX in PML-body localization. The human/mouse transcript mechanism does not by itself map the reported product to a particular current UniProt isoform.
"unlikely to be functionally equivalent to
the full length protein"
Alpha thalassemia/mental retardation syndrome X-linked gene product ATRX is required for proper replication restart and cellular resistance to replication stress.
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Human ATRX-deficient cells show impaired replication restart and a reduced origin-firing readout after hydroxyurea; the authors caution that inefficient CldU incorporation during recovery may contribute to the latter observation. The authors conclude that ATRX does not regulate replication rate from unchanged fiber lengths after release. MRN copurifies with ATRX; cotransfection pull-down recovers NBS1 rather than the other tested MRN components.
"ATRX pulled down NBS1, but not the other two components"
Atrx deficiency induces telomere dysfunction, endocrine defects, and reduced life span.
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Atrx loss in mouse neural progenitors produces replication-associated damage with ATM activation and downstream p53-dependent apoptosis; combined p53 loss increases persistence of damaged cells.
"loss of ATRX in the embryonic brain results in the accumulation of DNA damage"
ATRX ADD domain is a versatile module for recognizing macroH2A, H3, and beyond.
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Purified human ATRX fragments map macroH2A-H2B recognition to the ADD domain, with discrimination from canonical H2A in the tested assays. The same study distinguishes direct CHD4 peptide binding from broader NuRD associations.
"retained the ability to bind GST-mH2A-H2B"
Distinct ATRX functions cooperate with 9-1-1 and CST complexes to safeguard replication and telomere integrity.
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Human-cell separation-of-function experiments distinguish PIP-dependent protection against genome-wide replication stress from ATPase-dependent suppression of telomeric single-stranded DNA, with endpoint-specific dependence on the ATRX-DAXX interaction.
"genome-wide replication-stress sensitivity of ATRX-null cells was recapitulated with a PIP-box mutant"