Affinage mechanistic annotation for ARMH3 (human) Affinage Affinage (Claude Sonnet reading pass + Opus synthesis pass) 5 citations

Affinage mechanistic annotation for ARMH3 (human)

Current model (mechanistic narrative)

ARMH3 (C10orf76/DGARM) is an armadillo-repeat protein that organizes phosphatidylinositol 4-phosphate (PI4P) production at the trans-Golgi network to drive downstream membrane trafficking, lipid transport, and innate immune signaling [PMID:39580461, PMID:36921576]. It is recruited to the TGN as an effector of the active GTPase ARL5, binding GTP-bound but not inactive ARL5 in a SYS1-ARFRP1-ARL5-dependent manner PMID:39580461. At the Golgi, ARMH3 forms a heterodimeric complex with PI4KB by binding the PI4KB kinase linker region, an interaction modulated by PKA-dependent phosphorylation of PI4KB; this complex is required both for ARMH3 membrane recruitment and for Golgi PI4P levels PMID:31829496. Through this PI4KB-dependent PI4P pool, ARMH3 promotes recruitment of the oncoprotein GOLPH3 and TGN glycan modifications PMID:39580461, and supplies a distal-Golgi PI4P pool preferentially used by the ceramide transport protein CERT for ER-to-Golgi ceramide trafficking PMID:37195633. In innate immunity, ARMH3 interacts with STING at the Golgi upon cGAMP stimulation and recruits PI4KB to generate PI4P that directs STING Golgi-to-endosome trafficking via AP-1 and GGA2; disruption of the ARMH3-PI4KB-PI4P axis impairs STING activation, and Armh3-deficient mice are susceptible to DNA virus challenge PMID:36921576. ARMH3 also interacts with the ARF GEF GBF1 and contributes to Arf1 activation, with its depletion causing Golgi fragmentation and impaired secretion [PMID:31829496, PMID:31519766], while its function is distinct from GARP-mediated endosome-to-TGN retrograde transport PMID:39580461.

Affinage mechanism profile (Affinage's own GO/Reactome grounding)

Dated findings (citation-anchored)

Year Confidence Finding PMIDs Journal
2024 High ARMH3 (C10orf76) binds to active (GTP-bound) but not inactive ARL5, and is recruited to the trans-Golgi network (TGN) in a SYS1-ARFRP1-ARL5-dependent manner, functioning as an ARL5 effector. PMID:39580461 Nature Communications
2024 High ARMH3, recruited to the TGN via the SYS1-ARFRP1-ARL5 axis, activates PI4KB (phosphatidylinositol 4-kinase IIIβ) to generate the main pool of PI4P at the TGN, which in turn contributes to recruitment of the oncoprotein GOLPH3 and glycan modifications at the TGN. PMID:39580461 Nature Communications
2024 Medium ARMH3 (DGARM/C10orf76) is not required for retrograde transport of various cargo proteins from endosomes to the TGN, distinguishing its function from that of GARP. PMID:39580461 Nature Communications
2023 High Upon cGAMP stimulation, ARMH3 interacts with STING at the Golgi and recruits PI4KB to synthesize PI4P, which directs STING Golgi-to-endosome trafficking via the PI4P-binding proteins AP-1 and GGA2. PMID:36921576 Immunity
2023 High Disruption of the ARMH3-PI4KB-PI4P axis impairs STING activation, while aberrantly elevated cellular PI4P leads to cGAS-independent STING activation, and Armh3fl/fl;LyzCre/Cre mice are susceptible to DNA virus challenge in vivo. PMID:36921576 Immunity
2019 High C10orf76 (ARMH3) directly binds PI4KB via the kinase linker region of PI4KB, forming a heterodimeric complex whose assembly is modulated by PKA-dependent phosphorylation of PI4KB. PMID:31829496 EMBO Reports
2019 High PI4KB is required for membrane recruitment of C10orf76 (ARMH3) to the Golgi, and an intact C10orf76-PI4KB complex is required for Golgi PI4P levels and replication of c10orf76-dependent enteroviruses (e.g., coxsackievirus A10). PMID:31829496 EMBO Reports
2019 Medium C10orf76 (ARMH3) contributes to proper Arf1 activation at the Golgi, providing a putative mechanism for the C10orf76-dependent increase in PI4P levels. PMID:31829496 EMBO Reports
2019 High C10orf76 (ARMH3) interacts with GBF1 (a Golgi-localized ARF guanine nucleotide exchange factor) and rapidly cycles on and off GBF1-positive Golgi structures; its depletion causes Golgi fragmentation, alters GBF1 recruitment, and impairs secretion. PMID:31519766 Molecular & Cellular Proteomics
2023 High C10orf76 (ARMH3) localizes predominantly at distal Golgi regions and, together with PI4KB, generates a PI4P pool that is preferentially utilized by the ceramide transport protein CERT for ER-to-distal-Golgi ceramide trafficking (as opposed to the PI4KB pool recruited by ACBD3). PMID:37195633 Journal of Cell Biology

Citations