Gene Ontology annotation through association of InterPro records with GO terms
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
Electronic Gene Ontology annotations created by ARBA machine learning models
Combined Automated Annotation using Multiple IEA Methods
Beta-NAP, a cerebellar degeneration antigen, is a neuron-specific vesicle coat protein.
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AP3B2 (beta-NAP) is a neuron-specific vesicle coat protein related to beta-adaptin and beta-COP
"We have identified a target antigen in autoimmune cerebellar degeneration, beta-NAP, that is closely related to the beta-adaptin and beta-COP coat proteins."
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Beta-NAP is expressed exclusively in neurons from E12 through adulthood
"Beta-NAP is a nonclathrin-associated phosphoprotein expressed exclusively in neurons, from E12 through adulthood."
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Present in neuronal soma and nerve terminal as soluble and membrane-bound pools
"Beta-NAP is present in the neuronal soma and nerve terminal as soluble and membrane-bound pools"
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Associated with a discrete set of nerve-terminal vesicles
"and is associated with a discrete set of nerve-terminal vesicles"
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Proposed to mediate vesicle transport between soma and axon terminus
"We propose a model in which beta-NAP mediates vesicle transport between the soma and the axon terminus"
Association of the AP-3 adaptor complex with clathrin.
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AP-3 associates with clathrin via the beta3 subunit appendage domain
"In vitro binding assays showed that mammalian AP-3 did associate with clathrin by interaction of the appendage domain of its beta3 subunit with the amino-terminal domain of the clathrin heavy chain."
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Beta3 appendage binds the amino-terminal domain of clathrin heavy chain
"by interaction of the appendage domain of its beta3 subunit with the amino-terminal domain of the clathrin heavy chain"
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AP-3 colocalizes with clathrin in cells by immunofluorescence and immunoEM
"AP-3 colocalized with clathrin in cells as observed by immunofluorescence and immunoelectron microscopy."
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AP-3 function in protein sorting may depend on clathrin
"Thus, AP-3 function in protein sorting may depend on clathrin."
Assembly and function of AP-3 complexes in cells expressing mutant subunits.
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Beta3A and beta3B both assembled into functional AP-3 complexes in pearl cells
"However, only beta3A, beta3B, and the point mutant gave full functional rescue, as assayed by LAMP-1 sorting."
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The beta3A clathrin-binding site was not needed for AP-3-dependent LAMP-1 sorting
"These results indicate that the hinge and/or ear domains of beta3 are important for function, but the clathrin binding site is not needed."
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The tested beta3 constructs were not fully clathrin-colocalized
"this construct, like the others, was at least partially localized to structures that were negative for clathrin."
A structure-based mechanism for initiation of AP-3 coated vesicle formation.
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Human AP-3 coat initiation proceeds through cargo-coupled Arf1 binding and AP-3 dimerization
"Finally, binding of the second Arf1 molecule provides the template for AP-3 dimerization, providing a glimpse into the first step of coat polymerization."
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The human AP-3 cryo-EM structures support a cargo-first model for coat polymerization
"We propose coat polymerization only occurs after cargo engagement, thereby linking cargo sorting with assembly of higher-order coat structures."
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AP-3 probably uses clathrin-independent tubular coats in at least some contexts
"While it is still unknown whether AP-3 can form tubular coats akin to AP-1, our findings that AP-3 contains multiple AH domains and can co-opt Arf1 for homodimerization suggests that a clathrin-independent tubular coat for AP-3 is likely."
Architecture of clathrin-independent AP3:ARF1-coated carriers.
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AP3:ARF1 can generate carriers without a clathrin lattice
"By demonstrating that AP3:ARF1 can generate carriers without using a clathrin lattice, we explain the clathrin independence of AP3-mediated trafficking."
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AP3:ARF1 coat interfaces are needed for recruitment, carrier formation, and lysosomal cargo trafficking
"Targeted point mutations disrupting critical AP3:ARF1 and AP3:AP3 lattice interfaces disrupt AP3 recruitment, carrier formation, and lysosomal cargo trafficking in cells."
Genetic analysis of the neuronal and ubiquitous AP-3 adaptor complexes reveals divergent functions in brain.
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Neurons express AP-3 with either ubiquitous (beta3A) or neuronal-specific (beta3B) isoforms
"Neurons express adaptor (AP)-3 complexes assembled with either ubiquitous (beta3A) or neuronal-specific (beta3B) beta3 isoforms."
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Beta3B-containing AP-3 is preferentially targeted to neuronal processes
"At the cellular level, AP-3 isoforms were localized to distinct neuronal domains. beta3B-containing AP-3 complexes were preferentially targeted to neuronal processes."
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Beta3B deficiency compromises synaptic vesicle targeting of ZnT3 and ClC-3
"Consistently, beta3B deficiency compromised synaptic zinc stores assessed by Timm's staining and the synaptic vesicle targeting of membrane proteins involved in zinc uptake (ZnT3 and ClC-3)."
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Neuronal and ubiquitous AP-3 have distinct and divergent functions
"These observations indicate that the functions of beta3A- and beta3B-containing complexes are distinct and divergent."
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Concerted functions control levels of selected membrane proteins in synaptic vesicles
"Our results suggest that concerted nonredundant functions of neuronal and ubiquitous AP-3 provide a mechanism to control the levels of selected membrane proteins in synaptic vesicles."
Cell type-specific Rab32 and Rab38 cooperate with the ubiquitous lysosome biogenesis machinery to synthesize specialized lysosome-related organelles.
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Rab32 and Rab38 interact with AP-1, AP-3, and BLOC-2 on early/recycling endosome membranes
"endogenous Rab32 and Rab38 were found to interact with BLOC-2, AP-1 and AP-3 in membrane, but not cytosolic fractions"
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AP-3 localizes to specific tubular domains of early/recycling endosomes
"The localization of Rab32 and Rab38 is likely to specific tubular domains of early/recycling endosomes that contain AP-1, AP-3 or BLOC-2."
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AP-3 functions in cargo sorting to lysosome-related organelles
"Packaging of the tyrosinases into transport vesicles at early/recycling endosome-associated tubules is dependent on ubiquitous adaptor protein complex (AP)-1 and AP-3"
Deep research review of AP3B2 gene function
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AP3B2 is the neuron-specific beta subunit of the AP-3 adaptor complex
"AP3B2 encodes the beta-2 subunit of the adaptor-related protein complex 3 (AP-3)"
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AP-3 mediates protein sorting from TGN and endosomes to lysosomes
"AP-3 plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes"
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Mutations cause developmental and epileptic encephalopathy type 48 (DEE48)
"Biallelic loss-of-function mutations in AP3B2 cause developmental and epileptic encephalopathy 48 (DEE48)"
Comprehensive deep research review of AP3B2 gene function (Cyberian)
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AP-3 generates synaptic vesicles responding specifically to high-frequency stimulation through recruitment of phospholipid flippase ATP8A1
"The study demonstrated that in mouse hippocampal neurons and slices, AP-3 generates a subset of synaptic vesicles that respond specifically to high-frequency stimulation. Proteomics analysis identified the phospholipid flippase ATP8A1 and its auxiliary subunit TMEM30A as AP-3-dependent synaptic vesicle cargoes."
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AP-3 has two independent functions in dopamine neurons - targeting VMAT2 to axons and producing high-frequency-responsive synaptic vesicles
"First, AP-3 confers axonal polarity of dopamine release by targeting vesicular monoamine transporter 2 (VMAT2) to axons rather than dendrites. Second, AP-3 acting locally at nerve terminals produces synaptic vesicles that respond specifically to high-frequency stimulation."
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Cryo-EM structures reveal stepwise conformational activation of AP-3 mediated by Arf1 dimerization
"This work revealed that dimerization of AP-3 is mediated by the small GTPase Arf1, using the same interface that mediates Arf polymerization... Three distinct structural states were identified: AP-3 bound to a single Arf1 on the delta subunit, AP-3 bound to two Arf1 copies with LAMP1 cargo, and a dimer of the double-Arf1-cargo-AP-3 complex."
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AP-3-derived vesicles contribute specifically to asynchronous neurotransmitter release
"Vesicles derived via the AP-3-dependent recycling pathway contribute specifically to asynchronous release and influence information transfer."
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Beta3B deficiency has opposite effects on synaptic vesicle protein composition compared to beta3A deficiency
"Loss of the ubiquitous isoform (beta3A) has the opposite effect, significantly increasing synaptic zinc and zinc transporter content."
OpenScientist evaluation of Arf1-driven versus clathrin-dependent neuronal AP-3 coat initiation
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The OpenScientist report judged AP-3 to be primarily an Arf1-dependent cargo adaptor and coat complex
"The evidence supports a model where **AP-3 is primarily an Arf1-dependent cargo adaptor/coat complex** rather than a clathrin adaptor."
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The report recommended downgrading clathrin-cargo adaptor activity for AP3B2
"Clathrin binding is biochemically real but functionally dispensable for core AP-3 sorting (Peden et al. 2002). Should not be the primary MF annotation."
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Direct testing of the AP3B2 clathrin-binding site in neurons remains a gap
"**AP3B2 clathrin-binding dispensability not directly tested.**"