Gene Research for GO Annotation Review Falcon citations file

Gene Research for GO Annotation Review

Target

UniProt Context

=== UNIPROT METADATA ===
UniProt ID: O82132
Entry Name: DRE2A_ARATH
Gene Name: DREB2A
Locus Tag: At5g05410 {ECO:0000312|Araport:AT5G05410}
Gene Synonyms: ERF045 {ECO:0000303|PubMed:16407444}
Protein Name: Dehydration-responsive element-binding protein 2A
Organism: Arabidopsis thaliana (Mouse-ear cress)
NCBI Taxonomy ID: 3702
Function: Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' (PubMed:11798174). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (PubMed:11798174). Promotes the expression of heat stress-inducible genes by contributing to the formation of a heat stress-specific transcriptional complex with NF-Y subunits (e.g. DPB3-1, NF-YA2 and NF- YB3) at the promoter of target genes, thus promoting heat tolerance (PubMed:25490919).
Subcellular Location: Nucleus
Subunit: Interacts with MED25 (PubMed:18552202, PubMed:21536906). Binds to DPB3-1 in the nucleus during heat-stress (PubMed:25490919).
======================

Research Objective

Prepare a comprehensive literature-backed research report for GO annotation review of the target gene.

Focus on:

  1. The core biochemical activity of the gene product and any substrate specificity.
  2. The activation or maturation mechanism of the protein, including proteolytic processing if relevant.
  3. The best-supported subcellular localization and complexes where the active protein functions.
  4. The strongest experimentally supported biological processes in the target organism, or in very close orthologs when transfer is justified.
  5. Which annotations appear to reflect core function versus context-specific, pleiotropic, or over-extended roles.
  6. Any evidence bearing on apoptosis, developmental cell death, neuronal roles, inflammatory signaling, pyroptosis, synaptic remodeling, protein processing, and localization to cytoplasm, cytosol, nucleus, or signaling complexes.

Output Requirements

Structure the report as:

  1. Executive summary
  2. Molecular function
  3. Biological process roles
  4. Cellular localization and complexes
  5. Annotation-risk assessment
  6. Key literature

Use citations for all substantive claims.

Gene Research Report for GO Annotation Review: DREB2A (Arabidopsis thaliana; At5g05410; UniProt O82132)

1. Executive summary

DREB2A (Dehydration-responsive element-binding protein 2A) is an AP2/ERF-family, DREB-subgroup transcription factor whose core biochemical activity is sequence-specific DNA binding to dehydration-responsive element/C-repeat (DRE/CRT) cis-elements with an A/GCCGAC core (often described as the DRE consensus TACCGACAT) and RNA polymerase II–dependent transcriptional activation of abiotic-stress response genes in Arabidopsis. The strongest experimental support includes (i) DRE-based binding/selection history (yeast one-hybrid isolation), (ii) reporter transactivation assays (DRE-driven and HsfA3 promoter reporters), and (iii) in planta genetic/transgenic evidence demonstrating that post-translationally derepressed DREB2A (NRD-deleted “DREB2A-CA”) drives stress-inducible gene expression and stress tolerance (qin2008arabidopsisdreb2ainteractingproteinsfunction pages 1-2, morimoto2013stabilizationofarabidopsis pages 1-2, morimoto2013stabilizationofarabidopsis pages 4-5).

DREB2A’s activity is primarily regulated by post-translational control of protein stability and activation through a ~30-aa serine/threonine-rich negative regulatory domain (NRD). Two major E3-ligase systems negatively regulate DREB2A abundance: DRIP1/DRIP2 (RING E3 ligases) and BPM–CUL3 (CRL3BPM) adaptors, both promoting 26S proteasome-dependent turnover; genetic disruption stabilizes DREB2A and alters drought/heat phenotypes (qin2008arabidopsisdreb2ainteractingproteinsfunction pages 8-9, morimoto2017bpmcul3e3ligase pages 7-8). Recent authoritative reviews (2024) integrate additional regulatory inputs, including heat-induced SUMOylation near/within the NRD that inhibits BPM interaction and stabilizes DREB2A, and upstream transcriptional induction by GRF7 (repression) and HSFA1/MBF1C (heat activation) (kim2024regulatorynetworksin pages 6-7, sato2024complexplantresponses pages 8-8).

Subcellularly, DREB2A functions in the nucleus, where nuclear import is required both for transcriptional output and for proteasome-dependent turnover; two redundant NLS motifs control nuclear localization (morimoto2013stabilizationofarabidopsis pages 4-5). Under heat stress, DREB2A participates in a heat-stress-specific transcriptional complex with DPB3-1/NF-YC10 and NF-Y subunits that enhances activation of heat-inducible targets such as HsfA3 (sato2014arabidopsisdpb31a pages 10-11, sato2014arabidopsisdpb31a media d2deeb56).

No evidence in the retrieved literature supports annotating DREB2A to animal-centric pathways (apoptosis, neuronal/synaptic processes, inflammatory signaling, pyroptosis). Mentions of “cell death” largely relate to plant-specific regulators (e.g., RCD1) and should not be transferred to animal apoptosis terms without direct evidence (morimoto2013stabilizationofarabidopsis pages 11-11, sato2024complexplantresponses pages 9-10).

2. Molecular function (GO Molecular Function)

2.1 Core biochemical activity and substrate specificity

Activity: DREB2A is a sequence-specific DNA-binding transcription factor.

DNA motif specificity: DREB2A recognizes DRE/CRT elements sharing an A/GCCGAC core; DRE is often described as TACCGACAT, and DREB2A is repeatedly characterized as binding DRE/CRT to mediate drought/heat inducible transcription (sato2014arabidopsisdpb31a pages 1-2, qin2008arabidopsisdreb2ainteractingproteinsfunction pages 1-2). This is the most appropriate specificity statement for GO MF curation based on the retrieved evidence.

Transcriptional activation: In Arabidopsis protoplast assays, GFP-DREB2A activates a DRE-driven reporter (36DRE-GUS). A constitutively active NRD-deleted form (GFP-DREB2A-CA) shows ~2-fold higher transactivation than full-length GFP-DREB2A, supporting activator function (morimoto2013stabilizationofarabidopsis pages 4-5). Additionally, DREB2A cooperates with NF-Y subunits to activate the HsfA3 promoter reporter (sato2014arabidopsisdpb31a pages 10-11).

2.2 Activation/maturation mechanism

DREB2A does not require proteolytic processing for activation; instead, its activity is gated by post-translational control centered on a negative regulatory domain (NRD). Stabilization/accumulation alone can be necessary but is not sufficient to induce targets, implying additional activation steps beyond abundance control (morimoto2013stabilizationofarabidopsis pages 1-2).

Key mechanistic control points supported by primary evidence and consolidated by recent reviews:

2.3 Cofactor interactions relevant to MF (expert analysis)

3. Biological process roles (GO Biological Process)

3.1 Drought/dehydration response (strongest quantitative evidence)

A primary, experimentally supported role of DREB2A is the regulation of dehydration/drought-induced gene expression. DRIP1/DRIP2 double mutants (which stabilize DREB2A) show large transcriptome changes and improved drought-associated phenotypes:

These results support BP annotations centered on regulation of transcription in response to water deprivation / drought and ABA-independent osmotic stress response, with DRIP1/2 functioning as negative regulators of the DREB2A arm of the response (qin2008arabidopsisdreb2ainteractingproteinsfunction pages 8-9).

3.2 Heat stress response and thermotolerance

DREB2A is also strongly supported as a regulator of heat-responsive gene expression and thermotolerance:

This supports BP annotations such as response to heat and positive regulation of thermotolerance, with the caveat that promoter-level cooperative complexes contribute to target selectivity (sato2014arabidopsisdpb31a pages 10-11, sato2014arabidopsisdpb31a media d2deeb56).

3.3 High salinity / osmotic stress

Multiple sources place DREB2A within an ABA-independent transcriptional pathway induced by drought and high salinity and acting through DRE/CRT promoter elements (shinozaki2022functionalgenomicsin pages 4-6, nakashima2025transcriptionalgenenetwork pages 5-6). However, within the extracted primary experimental evidence set here, quantitative salt phenotypes specific to DREB2A are less developed than drought/heat (nakashima2025transcriptionalgenenetwork pages 5-6). For GO review, salt-related BP terms should be supported with direct experimental evidence (ideally salt-stress phenotyping or salt-induced target induction assays) if required.

4. Cellular localization and complexes (GO Cellular Component)

4.1 Subcellular localization

DREB2A functions primarily in the nucleus:

These observations support GO CC annotation to nucleus and argue against default annotation to cytosol except as a transient localization state for NLS mutants or specific experimental constructs (morimoto2013stabilizationofarabidopsis pages 4-5).

4.2 Protein complexes

Heat-stress DREB2A–NF-Y transcriptional complex: DPB3-1/NF-YC10 interacts with DREB2A and contributes to a trimeric NF-Y complex (NF-YA2/NF-YB3/DPB3-1) that associates with DREB2A on target promoters during heat stress. Evidence includes Y2H, in vitro pull-down, BiFC (root tissues after 37°C), co-IP, and protoplast transactivation synergy on the HsfA3 promoter (sato2014arabidopsisdpb31a pages 2-3, sato2014arabidopsisdpb31a pages 10-11). The mechanistic model is shown in the figure panel retrieved from Sato et al. 2014 (sato2014arabidopsisdpb31a media d2deeb56).

Mediator (MED25) interaction: DREB2A binds MED25’s ACID domain with biochemical/biophysical support (NMR, ITC, SPR, GST pull-down), and interaction mapping localizes the MED25-binding region within DREB2A (aguilar2014interactionstudiesof pages 6-7, elfving2013functionalstudiesof pages 36-39). Whether this should be annotated as “Mediator complex binding” depends on GO practice and whether the interaction is interpreted as direct binding to a Mediator subunit (supported) versus membership in a stable Mediator-containing complex (not directly demonstrated in planta in the extracted evidence) (aguilar2014interactionstudiesof pages 6-7, aguilar2014interactionstudiesof pages 1-2).

5. Annotation-risk assessment (curation guidance)

This section separates core function from context-specific or higher-risk interpretations.

5.1 Core vs context-specific annotations

5.2 MED25: activation vs repression ambiguity (risk)

MED25 directly binds DREB2A (strong biochemical evidence) (aguilar2014interactionstudiesof pages 6-7). However, genetic evidence and review synthesis suggest MED25 can act as a negative regulator/corepressor of DREB2A in drought responses (opposite drought phenotypes; elevated RD29A/RD29B induction in med25 summarized in one source) (chong2020mediatorcomplexa pages 5-7, elfving2013functionalstudiesof pages 36-39). Therefore:

5.3 Apoptosis, neuronal, inflammatory, pyroptosis, synaptic remodeling (do not annotate)

No retrieved evidence links DREB2A to these animal-centric processes. Mentions of “cell death” mainly involve plant-specific regulators (e.g., RCD1) and do not justify apoptosis/pyroptosis terms. Thus, annotations in these categories would be over-extended and unsupported for Arabidopsis DREB2A (morimoto2013stabilizationofarabidopsis pages 11-11, morimoto2017bpmcul3e3ligase pages 1-2).

6. Key literature (prioritized; includes URLs and publication dates)

Recent (prioritize 2023–2024) authoritative sources

  1. Kim JS, Kidokoro S, Yamaguchi-Shinozaki K, Shinozaki K. Regulatory networks in plant responses to drought and cold stress. Plant Physiology (Mar 2024). https://doi.org/10.1093/plphys/kiae105 (kim2024regulatorynetworksin pages 6-7)
  2. Consolidates NRD-centric post-translational control and stress-dependent stabilization mechanisms.

  3. Sato H, Mizoi J, Shinozaki K, Yamaguchi‐Shinozaki K. Complex plant responses to drought and heat stress under climate change. The Plant Journal (Jan 2024). https://doi.org/10.1111/tpj.16612 (sato2024complexplantresponses pages 8-8, sato2024complexplantresponses pages 9-10)

  4. Summarizes upstream promoter regulation (GRF7 repression; HSFA1/MBF1C activation) and heat-linked SUMOylation mechanisms.

  5. Wang X et al. Transcriptional Regulators of Plant Adaptation to Heat Stress. Int. J. Mol. Sci. (Aug 2023). https://doi.org/10.3390/ijms241713297 (sato2014arabidopsisdpb31a pages 1-2)

  6. Review context emphasizing NF-Y contributions to DREB2A activity under heat.

Primary experimental studies (high value for GO evidence)

  1. Qin F et al. Arabidopsis DREB2A-Interacting Proteins Function as RING E3 Ligases and Negatively Regulate Plant Drought Stress–Responsive Gene Expression. The Plant Cell (Jun 2008). https://doi.org/10.1105/tpc.107.057380 (qin2008arabidopsisdreb2ainteractingproteinsfunction pages 8-9, qin2008arabidopsisdreb2ainteractingproteinsfunction pages 11-12)
  2. DRIP1/DRIP2; transcriptome statistics; drought survival/ion leakage phenotypes.

  3. Sato H et al. Arabidopsis DPB3-1, a DREB2A Interactor, Specifically Enhances Heat Stress-Induced Gene Expression by Forming a Heat Stress-Specific Transcriptional Complex with NF-Y Subunits. The Plant Cell (Dec 2014). https://doi.org/10.1105/tpc.114.132928 (sato2014arabidopsisdpb31a pages 2-3, sato2014arabidopsisdpb31a pages 10-11, sato2014arabidopsisdpb31a media d2deeb56)

  4. Direct interaction/complex assays; promoter synergy; mechanistic model figure.

  5. Morimoto K et al. Stabilization of Arabidopsis DREB2A Is Required but Not Sufficient for the Induction of Target Genes under Conditions of Stress. PLoS ONE (Dec 2013). https://doi.org/10.1371/journal.pone.0080457 (morimoto2013stabilizationofarabidopsis pages 4-5)

  6. Nuclear localization/NLS logic; reporter assays; stabilization vs activation distinction.

  7. Morimoto K et al. BPM-CUL3 E3 ligase modulates thermotolerance by facilitating negative regulatory domain-mediated degradation of DREB2A in Arabidopsis. PNAS (Sep 2017). https://doi.org/10.1073/pnas.1704189114 (morimoto2017bpmcul3e3ligase pages 6-7, morimoto2017bpmcul3e3ligase pages 7-8)

  8. BPM–CUL3 control of DREB2A stability and thermotolerance phenotypes.

Mediator interaction (mechanistic structural evidence)

  1. Aguilar X et al. Interaction Studies of the Human and Arabidopsis thaliana Med25-ACID Proteins with the … Plant-Specific Dreb2a Transcription Factors. PLoS ONE (May 2014). https://doi.org/10.1371/journal.pone.0098575 (aguilar2014interactionstudiesof pages 6-7, aguilar2014interactionstudiesof pages 1-2)
  2. NMR/ITC/SPR/GST pull-down; conformational effects of MED25–DREB2A binding.

Evidence summary artifact

GO aspect Recommended GO term phrasing Core vs context-specific Key experimental evidence (assay type and key result) Key regulators/complexes Quantitative stats (if any) Primary citation (DOI URL and year)
MF sequence-specific DNA binding to DRE/CRT cis-regulatory element core DREB2A identified as a DRE-binding AP2/ERF transcription factor; binds DRE/CRT motifs with A/GCCGAC core, often described as TACCGACAT. Evidence includes yeast one-hybrid isolation and stress-promoter activation logic in Arabidopsis stress-gene studies (qin2008arabidopsisdreb2ainteractingproteinsfunction pages 1-2, morimoto2013stabilizationofarabidopsis pages 1-2) DRE/CRT promoter elements DRE-containing genes enriched among DREB2A-regulated outputs in drip mutants (qin2008arabidopsisdreb2ainteractingproteinsfunction pages 8-9) Qin et al. 2008, https://doi.org/10.1105/tpc.107.057380; Morimoto et al. 2013, https://doi.org/10.1371/journal.pone.0080457
MF DNA-binding transcription factor activity, RNA polymerase II-specific; transcriptional activator activity core Protoplast transactivation assays showed GFP-DREB2A activates a DRE-driven reporter, and constitutively active DREB2A-CA shows stronger activity; HsfA3 promoter reporter is further activated when DREB2A is combined with NF-YA2/NF-YB3/DPB3-1 (morimoto2013stabilizationofarabidopsis pages 4-5, sato2014arabidopsisdpb31a pages 10-11) NF-YA2, NF-YB3, DPB3-1/NF-YC10 DREB2A-CA ~2-fold higher reporter activation than GFP-DREB2A; NF-Y trimer gives ~2-fold enhancement on HsfA3 promoter reporter (morimoto2013stabilizationofarabidopsis pages 4-5, sato2014arabidopsisdpb31a pages 10-11) Morimoto et al. 2013, https://doi.org/10.1371/journal.pone.0080457; Sato et al. 2014, https://doi.org/10.1105/tpc.114.132928
CC nucleus core Confocal microscopy of GFP fusions in protoplasts/transgenics showed DREB2A is nuclear; two redundant NLSs are required, and D1/2 double mutant becomes strongly cytosolic with reduced transactivation. Nuclear import is also required for proteasome-dependent turnover (morimoto2013stabilizationofarabidopsis pages 4-5) NLS-dependent nuclear import machinery; DRIP1/2 act in nucleus D1/2 double NLS mutant strongly cytosolic and transcriptionally impaired; DREB2A-CA shows stronger nuclear fluorescence (morimoto2013stabilizationofarabidopsis pages 4-5, morimoto2013stabilizationofarabidopsis pages 1-2) Morimoto et al. 2013, https://doi.org/10.1371/journal.pone.0080457
BP regulation of drought/dehydration-responsive gene expression core drip1 drip2 double mutants, which stabilize DREB2A, show enhanced dehydration-inducible gene expression; overexpression of DREB2A-CA activates downstream drought-responsive genes and improves drought tolerance (qin2008arabidopsisdreb2ainteractingproteinsfunction pages 8-9, qin2008arabidopsisdreb2ainteractingproteinsfunction pages 11-12) DRIP1, DRIP2; DREB2A-CA 317 genes >2-fold up in nonstress and 369 genes >2-fold up after 2 h dehydration in drip1 drip2; drought survival WT 37.5% vs drip1 drip2 65.4%; ion leakage after 3 h dehydration >64% WT vs <32% drip1 drip2 (qin2008arabidopsisdreb2ainteractingproteinsfunction pages 8-9) Qin et al. 2008, https://doi.org/10.1105/tpc.107.057380
BP response to heat / positive regulation of thermotolerance core BPM knockdown stabilizes DREB2A, elevates DREB2A-dependent heat-inducible genes, and enhances thermotolerance in agar-plate and soil heat-shock assays; DREB2A acts with heat-specific NF-Y complex to activate HsfA3 promoter (morimoto2017bpmcul3e3ligase pages 6-7, morimoto2017bpmcul3e3ligase pages 7-8, sato2014arabidopsisdpb31a pages 10-11) BPM-CUL3 E3 ligase; NF-YA2/NF-YB3/DPB3-1 About one-half of heat-inducible genes upregulated in amiBPM are DREB2A-dependent; significant survival/chlorophyll advantages after 43°C for 45 min or 45°C for 5 h (morimoto2017bpmcul3e3ligase pages 6-7, morimoto2017bpmcul3e3ligase pages 7-8) Morimoto et al. 2017, https://doi.org/10.1073/pnas.1704189114; Sato et al. 2014, https://doi.org/10.1105/tpc.114.132928
BP response to high salinity / ABA-independent osmotic stress gene regulation context Reviews consistently place DREB2A in ABA-independent drought/high-salinity transcriptional regulation and note stress-inducible expression under high salt, but the extracted primary evidence here is less direct than for drought/heat (shinozaki2022functionalgenomicsin pages 4-6, nakashima2025transcriptionalgenenetwork pages 5-6) DRE/CRT pathway; upstream ABA-independent signaling No salt-specific quantitative phenotype extracted in this evidence set Shinozaki & Yamaguchi-Shinozaki 2022, https://doi.org/10.2183/pjab.98.024; Nakashima et al. 2025, https://doi.org/10.1098/rstb.2024.0236
BP ubiquitin-dependent protein catabolic process regulating DREB2A abundance context DRIP1/2 are nuclear RING E3 ligases that ubiquitinate DREB2A and negatively regulate drought-stress gene expression; BPM proteins act as CUL3 substrate adaptors promoting NRD-dependent DREB2A degradation, especially relevant for thermotolerance control (qin2008arabidopsisdreb2ainteractingproteinsfunction pages 1-2, morimoto2017bpmcul3e3ligase pages 6-7, morimoto2017bpmcul3e3ligase pages 1-2) DRIP1, DRIP2, BPMs, CUL3, 26S proteasome DREB2A accumulation increases in drip and BPM-deficient backgrounds; heat-response outputs significantly enhanced in amiBPM (morimoto2017bpmcul3e3ligase pages 6-7, morimoto2013stabilizationofarabidopsis pages 4-5) Qin et al. 2008, https://doi.org/10.1105/tpc.107.057380; Morimoto et al. 2017, https://doi.org/10.1073/pnas.1704189114
MF Mediator complex subunit binding (MED25 ACID domain interaction) context Y2H identified MED25 as a DREB2A interactor; mapping localized interaction to DREB2A aa169–254/168–335 region; direct binding shown by GST pull-down, SPR, ITC, and NMR with conformational rearrangements upon binding (elfving2013functionalstudiesof pages 36-39, aguilar2014interactionstudiesof pages 6-7, aguilar2014interactionstudiesof pages 1-2) MED25 / Mediator tail ACID domain No major in planta quantitative binding statistic extracted; interaction is biophysically validated (aguilar2014interactionstudiesof pages 6-7) Aguilar et al. 2014, https://doi.org/10.1371/journal.pone.0098575; Elfving 2013, unknown journal/thesis source summarized in context
BP negative regulation or modulation of DREB2A-dependent drought gene expression by MED25 risk Genetic evidence suggests MED25 can oppose DREB2A in drought responses: med25 mutants are drought resistant and show increased RD29A/RD29B induction, implying context-dependent corepressor/modulator behavior rather than simple obligatory coactivator function (chong2020mediatorcomplexa pages 5-7, elfving2013functionalstudiesof pages 36-39) MED25; broader Mediator complex med25 drought-induced RD29A/RD29B reported as strongly elevated (150–3,200-fold range in summarized thesis context) (elfving2013functionalstudiesof pages 36-39) Chong et al. 2020, https://doi.org/10.3390/ijms21207755; Elfving 2013, unknown journal/thesis source summarized in context
CC DREB2A-containing heat-stress transcriptional complex with NF-Y subunits context DPB3-1 was found by Y2H as a DREB2A interactor; direct interaction confirmed by pull-down, BiFC in root tissues after 37°C, and co-IP. NF-YA2/NF-YB3/DPB3-1 trimer formation shown by yeast three-hybrid, BiFC, and co-IP; complex synergizes with DREB2A on HsfA3 promoter (sato2014arabidopsisdpb31a pages 2-3, sato2014arabidopsisdpb31a pages 10-11, sato2014arabidopsisdpb31a pages 11-13) DPB3-1/NF-YC10, NF-YA2, NF-YB3 Heat treatment 37°C for 2 h used for BiFC/co-IP confirmation; ~2-fold HsfA3 promoter enhancement with trimer plus DREB2A (sato2014arabidopsisdpb31a pages 2-3, sato2014arabidopsisdpb31a pages 10-11) Sato et al. 2014, https://doi.org/10.1105/tpc.114.132928
BP leaf senescence / programmed cell death-related annotation transfer risk Only indirect mentions involve RCD1 interaction and plant senescence/cell-death naming; no evidence in the retrieved set supports annotating DREB2A to apoptosis, pyroptosis, neuronal, synaptic, or inflammatory pathways. Treat these as over-extension risks (morimoto2013stabilizationofarabidopsis pages 11-11, sato2024complexplantresponses pages 9-10) RCD1 (plant-specific interactor) No direct quantitative support for DREB2A-driven senescence/cell-death annotation in extracted evidence Morimoto et al. 2013, https://doi.org/10.1371/journal.pone.0080457; Sato et al. 2024, https://doi.org/10.1111/tpj.16612

Table: This table summarizes GO-relevant evidence for Arabidopsis DREB2A across molecular function, biological process, and cellular component categories. It distinguishes core annotations from context-specific or higher-risk extensions and links each recommendation to specific assays, regulators, quantitative findings, and primary sources.

Figure evidence (model)

The heat-stress-specific DREB2A–NF-Y/DPB3-1 complex model is captured in Figure 9C of Sato et al. 2014 (sato2014arabidopsisdpb31a media d2deeb56).

References

  1. (qin2008arabidopsisdreb2ainteractingproteinsfunction pages 1-2): Feng Qin, Yoh Sakuma, Lam-Son Phan Tran, Kyonoshin Maruyama, Satoshi Kidokoro, Yasunari Fujita, Miki Fujita, Taishi Umezawa, Yoriko Sawano, Ken-ichi Miyazono, Masaru Tanokura, Kazuo Shinozaki, and Kazuko Yamaguchi-Shinozaki. arabidopsisdreb2a-interacting proteins function as ring e3 ligases and negatively regulate plant drought stress–responsive gene expression. Jun 2008. URL: https://doi.org/10.1105/tpc.107.057380, doi:10.1105/tpc.107.057380. This article has 648 citations.

  2. (morimoto2013stabilizationofarabidopsis pages 1-2): Kyoko Morimoto, Junya Mizoi, Feng Qin, June-Sik Kim, Hikaru Sato, Yuriko Osakabe, Kazuo Shinozaki, and Kazuko Yamaguchi-Shinozaki. Stabilization of arabidopsis dreb2a is required but not sufficient for the induction of target genes under conditions of stress. PLoS ONE, 8:e80457, Dec 2013. URL: https://doi.org/10.1371/journal.pone.0080457, doi:10.1371/journal.pone.0080457. This article has 87 citations and is from a peer-reviewed journal.

  3. (morimoto2013stabilizationofarabidopsis pages 4-5): Kyoko Morimoto, Junya Mizoi, Feng Qin, June-Sik Kim, Hikaru Sato, Yuriko Osakabe, Kazuo Shinozaki, and Kazuko Yamaguchi-Shinozaki. Stabilization of arabidopsis dreb2a is required but not sufficient for the induction of target genes under conditions of stress. PLoS ONE, 8:e80457, Dec 2013. URL: https://doi.org/10.1371/journal.pone.0080457, doi:10.1371/journal.pone.0080457. This article has 87 citations and is from a peer-reviewed journal.

  4. (qin2008arabidopsisdreb2ainteractingproteinsfunction pages 8-9): Feng Qin, Yoh Sakuma, Lam-Son Phan Tran, Kyonoshin Maruyama, Satoshi Kidokoro, Yasunari Fujita, Miki Fujita, Taishi Umezawa, Yoriko Sawano, Ken-ichi Miyazono, Masaru Tanokura, Kazuo Shinozaki, and Kazuko Yamaguchi-Shinozaki. arabidopsisdreb2a-interacting proteins function as ring e3 ligases and negatively regulate plant drought stress–responsive gene expression. Jun 2008. URL: https://doi.org/10.1105/tpc.107.057380, doi:10.1105/tpc.107.057380. This article has 648 citations.

  5. (morimoto2017bpmcul3e3ligase pages 7-8): Kyoko Morimoto, Naohiko Ohama, Satoshi Kidokoro, Junya Mizoi, Fuminori Takahashi, Daisuke Todaka, Junro Mogami, Hikaru Sato, Feng Qin, June-Sik Kim, Yoichiro Fukao, Masayuki Fujiwara, Kazuo Shinozaki, and Kazuko Yamaguchi-Shinozaki. Bpm-cul3 e3 ligase modulates thermotolerance by facilitating negative regulatory domain-mediated degradation of dreb2a in arabidopsis. Proceedings of the National Academy of Sciences, 114:E8528-E8536, Sep 2017. URL: https://doi.org/10.1073/pnas.1704189114, doi:10.1073/pnas.1704189114. This article has 155 citations and is from a highest quality peer-reviewed journal.

  6. (kim2024regulatorynetworksin pages 6-7): June-Sik Kim, Satoshi Kidokoro, Kazuko Yamaguchi-Shinozaki, and Kazuo Shinozaki. Regulatory networks in plant responses to drought and cold stress. Plant Physiology, 195:170-189, Mar 2024. URL: https://doi.org/10.1093/plphys/kiae105, doi:10.1093/plphys/kiae105. This article has 278 citations and is from a highest quality peer-reviewed journal.

  7. (sato2024complexplantresponses pages 8-8): Hikaru Sato, Junya Mizoi, Kazuo Shinozaki, and Kazuko Yamaguchi‐Shinozaki. Complex plant responses to drought and heat stress under climate change. The Plant journal : for cell and molecular biology, 117:1873-1892, Jan 2024. URL: https://doi.org/10.1111/tpj.16612, doi:10.1111/tpj.16612. This article has 473 citations.

  8. (sato2014arabidopsisdpb31a pages 10-11): H. Sato, J. Mizoi, Hidenori Tanaka, Kyonosin Maruyama, Feng Qin, Yuriko Osakabe, Kyoko Morimoto, T. Ohori, Kazuya Kusakabe, Maika Nagata, K. Shinozaki, and K. Yamaguchi-Shinozaki. Arabidopsis dpb3-1, a dreb2a interactor, specifically enhances heat stress-induced gene expression by forming a heat stress-specific transcriptional complex with nf-y subunits[c][w]. Plant Cell, 26:4954-4973, Dec 2014. URL: https://doi.org/10.1105/tpc.114.132928, doi:10.1105/tpc.114.132928. This article has 218 citations and is from a highest quality peer-reviewed journal.

  9. (sato2014arabidopsisdpb31a media d2deeb56): H. Sato, J. Mizoi, Hidenori Tanaka, Kyonosin Maruyama, Feng Qin, Yuriko Osakabe, Kyoko Morimoto, T. Ohori, Kazuya Kusakabe, Maika Nagata, K. Shinozaki, and K. Yamaguchi-Shinozaki. Arabidopsis dpb3-1, a dreb2a interactor, specifically enhances heat stress-induced gene expression by forming a heat stress-specific transcriptional complex with nf-y subunits[c][w]. Plant Cell, 26:4954-4973, Dec 2014. URL: https://doi.org/10.1105/tpc.114.132928, doi:10.1105/tpc.114.132928. This article has 218 citations and is from a highest quality peer-reviewed journal.

  10. (morimoto2013stabilizationofarabidopsis pages 11-11): Kyoko Morimoto, Junya Mizoi, Feng Qin, June-Sik Kim, Hikaru Sato, Yuriko Osakabe, Kazuo Shinozaki, and Kazuko Yamaguchi-Shinozaki. Stabilization of arabidopsis dreb2a is required but not sufficient for the induction of target genes under conditions of stress. PLoS ONE, 8:e80457, Dec 2013. URL: https://doi.org/10.1371/journal.pone.0080457, doi:10.1371/journal.pone.0080457. This article has 87 citations and is from a peer-reviewed journal.

  11. (sato2024complexplantresponses pages 9-10): Hikaru Sato, Junya Mizoi, Kazuo Shinozaki, and Kazuko Yamaguchi‐Shinozaki. Complex plant responses to drought and heat stress under climate change. The Plant journal : for cell and molecular biology, 117:1873-1892, Jan 2024. URL: https://doi.org/10.1111/tpj.16612, doi:10.1111/tpj.16612. This article has 473 citations.

  12. (sato2014arabidopsisdpb31a pages 1-2): H. Sato, J. Mizoi, Hidenori Tanaka, Kyonosin Maruyama, Feng Qin, Yuriko Osakabe, Kyoko Morimoto, T. Ohori, Kazuya Kusakabe, Maika Nagata, K. Shinozaki, and K. Yamaguchi-Shinozaki. Arabidopsis dpb3-1, a dreb2a interactor, specifically enhances heat stress-induced gene expression by forming a heat stress-specific transcriptional complex with nf-y subunits[c][w]. Plant Cell, 26:4954-4973, Dec 2014. URL: https://doi.org/10.1105/tpc.114.132928, doi:10.1105/tpc.114.132928. This article has 218 citations and is from a highest quality peer-reviewed journal.

  13. (qin2008arabidopsisdreb2ainteractingproteinsfunction pages 11-12): Feng Qin, Yoh Sakuma, Lam-Son Phan Tran, Kyonoshin Maruyama, Satoshi Kidokoro, Yasunari Fujita, Miki Fujita, Taishi Umezawa, Yoriko Sawano, Ken-ichi Miyazono, Masaru Tanokura, Kazuo Shinozaki, and Kazuko Yamaguchi-Shinozaki. arabidopsisdreb2a-interacting proteins function as ring e3 ligases and negatively regulate plant drought stress–responsive gene expression. Jun 2008. URL: https://doi.org/10.1105/tpc.107.057380, doi:10.1105/tpc.107.057380. This article has 648 citations.

  14. (aguilar2014interactionstudiesof pages 6-7): Ximena Aguilar, Jeanette Blomberg, Kristoffer Brännström, Anders Olofsson, Jürgen Schleucher, and Stefan Björklund. Interaction studies of the human and arabidopsis thaliana med25-acid proteins with the herpes simplex virus vp16- and plant-specific dreb2a transcription factors. PLoS ONE, 9:e98575, May 2014. URL: https://doi.org/10.1371/journal.pone.0098575, doi:10.1371/journal.pone.0098575. This article has 39 citations and is from a peer-reviewed journal.

  15. (aguilar2014interactionstudiesof pages 1-2): Ximena Aguilar, Jeanette Blomberg, Kristoffer Brännström, Anders Olofsson, Jürgen Schleucher, and Stefan Björklund. Interaction studies of the human and arabidopsis thaliana med25-acid proteins with the herpes simplex virus vp16- and plant-specific dreb2a transcription factors. PLoS ONE, 9:e98575, May 2014. URL: https://doi.org/10.1371/journal.pone.0098575, doi:10.1371/journal.pone.0098575. This article has 39 citations and is from a peer-reviewed journal.

  16. (chong2020mediatorcomplexa pages 5-7): Leelyn Chong, Pengcheng Guo, and Yingfang Zhu. Mediator complex: a pivotal regulator of aba signaling pathway and abiotic stress response in plants. International Journal of Molecular Sciences, 21:7755, Oct 2020. URL: https://doi.org/10.3390/ijms21207755, doi:10.3390/ijms21207755. This article has 56 citations.

  17. (elfving2013functionalstudiesof pages 36-39): N Elfving. Functional studies of mediator in arabidopsis thaliana and saccharomyces cerevisiae. Unknown journal, 2013.

  18. (morimoto2017bpmcul3e3ligase pages 6-7): Kyoko Morimoto, Naohiko Ohama, Satoshi Kidokoro, Junya Mizoi, Fuminori Takahashi, Daisuke Todaka, Junro Mogami, Hikaru Sato, Feng Qin, June-Sik Kim, Yoichiro Fukao, Masayuki Fujiwara, Kazuo Shinozaki, and Kazuko Yamaguchi-Shinozaki. Bpm-cul3 e3 ligase modulates thermotolerance by facilitating negative regulatory domain-mediated degradation of dreb2a in arabidopsis. Proceedings of the National Academy of Sciences, 114:E8528-E8536, Sep 2017. URL: https://doi.org/10.1073/pnas.1704189114, doi:10.1073/pnas.1704189114. This article has 155 citations and is from a highest quality peer-reviewed journal.

  19. (shinozaki2022functionalgenomicsin pages 4-6): Kazuo SHINOZAKI and Kazuko YAMAGUCHI-SHINOZAKI. Functional genomics in plant abiotic stress responses and tolerance: from gene discovery to complex regulatory networks and their application in breeding. Proceedings of the Japan Academy. Series B, Physical and Biological Sciences, 98:470-492, Oct 2022. URL: https://doi.org/10.2183/pjab.98.024, doi:10.2183/pjab.98.024. This article has 81 citations.

  20. (nakashima2025transcriptionalgenenetwork pages 5-6): Kazuo Nakashima, Kazuko Yamaguchi-Shinozaki, and Kazuo Shinozaki. Transcriptional gene network involved in drought stress response: application for crop breeding in the context of climate change. Philosophical Transactions of the Royal Society B: Biological Sciences, May 2025. URL: https://doi.org/10.1098/rstb.2024.0236, doi:10.1098/rstb.2024.0236. This article has 22 citations and is from a domain leading peer-reviewed journal.

  21. (sato2014arabidopsisdpb31a pages 2-3): H. Sato, J. Mizoi, Hidenori Tanaka, Kyonosin Maruyama, Feng Qin, Yuriko Osakabe, Kyoko Morimoto, T. Ohori, Kazuya Kusakabe, Maika Nagata, K. Shinozaki, and K. Yamaguchi-Shinozaki. Arabidopsis dpb3-1, a dreb2a interactor, specifically enhances heat stress-induced gene expression by forming a heat stress-specific transcriptional complex with nf-y subunits[c][w]. Plant Cell, 26:4954-4973, Dec 2014. URL: https://doi.org/10.1105/tpc.114.132928, doi:10.1105/tpc.114.132928. This article has 218 citations and is from a highest quality peer-reviewed journal.

  22. (morimoto2017bpmcul3e3ligase pages 1-2): Kyoko Morimoto, Naohiko Ohama, Satoshi Kidokoro, Junya Mizoi, Fuminori Takahashi, Daisuke Todaka, Junro Mogami, Hikaru Sato, Feng Qin, June-Sik Kim, Yoichiro Fukao, Masayuki Fujiwara, Kazuo Shinozaki, and Kazuko Yamaguchi-Shinozaki. Bpm-cul3 e3 ligase modulates thermotolerance by facilitating negative regulatory domain-mediated degradation of dreb2a in arabidopsis. Proceedings of the National Academy of Sciences, 114:E8528-E8536, Sep 2017. URL: https://doi.org/10.1073/pnas.1704189114, doi:10.1073/pnas.1704189114. This article has 155 citations and is from a highest quality peer-reviewed journal.

  23. (sato2014arabidopsisdpb31a pages 11-13): H. Sato, J. Mizoi, Hidenori Tanaka, Kyonosin Maruyama, Feng Qin, Yuriko Osakabe, Kyoko Morimoto, T. Ohori, Kazuya Kusakabe, Maika Nagata, K. Shinozaki, and K. Yamaguchi-Shinozaki. Arabidopsis dpb3-1, a dreb2a interactor, specifically enhances heat stress-induced gene expression by forming a heat stress-specific transcriptional complex with nf-y subunits[c][w]. Plant Cell, 26:4954-4973, Dec 2014. URL: https://doi.org/10.1105/tpc.114.132928, doi:10.1105/tpc.114.132928. This article has 218 citations and is from a highest quality peer-reviewed journal.