file:human/MYD88/MYD88-deep-research-falcon.md
Falcon deep research report on MYD88
GO_REF:0000002
Gene Ontology annotation through association of InterPro records with GO terms
GO_REF:0000024
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
GO_REF:0000033
Annotation inferences using phylogenetic trees
GO_REF:0000044
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
GO_REF:0000052
Gene Ontology annotation based on curation of immunofluorescence data
GO_REF:0000107
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
GO_REF:0000108
Automatic assignment of GO terms using logical inference, based on on inter-ontology links
GO_REF:0000117
Electronic Gene Ontology annotations created by ARBA machine learning models
GO_REF:0000120
Combined Automated Annotation using Multiple IEA Methods
PMID:9013863
The cloning and characterization of human MyD88: a member of an IL-1 receptor related family.
PMID:9374458
IRAK (Pelle) family member IRAK-2 and MyD88 as proximal mediators of IL-1 signaling.
PMID:9430229
MyD88: an adapter that recruits IRAK to the IL-1 receptor complex.
PMID:9734363
MyD88 is an adaptor protein in the hToll/IL-1 receptor family signaling pathways.
PMID:10880445
The apoptotic signaling pathway activated by Toll-like receptor-2.
PMID:11544529
Mal (MyD88-adapter-like) is required for Toll-like receptor-4 signal transduction.
PMID:12761501
Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways.
PMID:12860405
Characterization of Pellino2, a substrate of IRAK1 and IRAK4.
PMID:15294994
Toll IL-1 receptors differ in their ability to promote the stabilization of adenosine and uridine-rich elements containing mRNA.
PMID:15361868
Interferon-alpha induction through Toll-like receptors involves a direct interaction of IRF7 with MyD88 and TRAF6.
PMID:15728506
Human TLR10 is a functional receptor, expressed by B cells and plasmacytoid dendritic cells, which activates gene transcription through MyD88.
PMID:16189514
Towards a proteome-scale map of the human protein-protein interaction network.
PMID:16293622
Localization of TLR2 and MyD88 to Chlamydia trachomatis inclusions. Evidence for signaling by intracellular TLR2 during infection with an obligate intracellular pathogen.
PMID:16365431
Modulation of TLR4 signaling by a novel adaptor protein signal-transducing adaptor protein-2 in macrophages.
PMID:16751103
Phosphoinositide-mediated adaptor recruitment controls Toll-like receptor signaling.
PMID:17126326
Extracellular heat shock protein 70 mediates heat stress-induced epidermal growth factor receptor transactivation in A431 carcinoma cells.
PMID:17258210
MAPPIT analysis of TLR adaptor complexes.
PMID:17567694
Hepatitis C virus nonstructural protein 5A modulates the toll-like receptor-MyD88-dependent signaling pathway in macrophage cell lines.
PMID:17583698
Distinct roles of TIR and non-TIR regions in the subcellular localization and signaling properties of MyD88.
PMID:18319258
Class-specific regulation of pro-inflammatory genes by MyD88 pathways and IkappaBzeta.
PMID:18802081
IL-33 induces antigen-specific IL-5+ T cells and promotes allergic-induced airway inflammation independent of IL-4.
PMID:19281832
Activation of ROS/NF-kappaB and Ca2+/CaM kinase II are necessary for VCAM-1 induction in IL-1beta-treated human tracheal smooth muscle cells.
PMID:19509286
A TIR domain variant of MyD88 adapter-like (Mal)/TIRAP results in loss of MyD88 binding and reduced TLR2/TLR4 signaling.
PMID:19593445
Expression of the Bcl-2 protein BAD promotes prostate cancer growth.
PMID:19948740
AIP1 functions as Arf6-GAP to negatively regulate TLR4 signaling.
PMID:20219467
Identification of MyD88 as a novel target of miR-155, involved in negative regulation of Helicobacter pylori-induced inflammation.
PMID:20676093
The transmembrane activator TACI triggers immunoglobulin class switching by activating B cells through the adaptor MyD88.
PMID:20696886
Aspartate-glutamate-alanine-histidine box motif (DEAH)/RNA helicase A helicases sense microbial DNA in human plasmacytoid dendritic cells.
PMID:21057262
Clinical features and outcome of patients with IRAK-4 and MyD88 deficiency.
PMID:21334391
The hepatitis B e antigen (HBeAg) targets and suppresses activation of the toll-like receptor signaling pathway.
PMID:21516116
Next-generation sequencing to generate interactome datasets.
PMID:21829704
TIRAP, an adaptor protein for TLR2/4, transduces a signal from RAGE phosphorylated upon ligand binding.
PMID:21873236
Crystal structure of Toll-like receptor adaptor MAL/TIRAP reveals the molecular basis for signal transduction and disease protection.
PMID:21988832
Toward an understanding of the protein interaction network of the human liver.
PMID:22155231
The Brucella TIR-like protein TcpB interacts with the death domain of MyD88.
PMID:22581261
DOCK8 functions as an adaptor that links TLR-MyD88 signaling to B cell activation.
PMID:22851693
β-TrCP-mediated IRAK1 degradation releases TAK1-TRAF6 from the membrane to the cytosol for TAK1-dependent NF-κB activation.
PMID:23633945
HCV-induced miR-21 contributes to evasion of host immune system by targeting MyD88 and IRAK1.
PMID:24316379
Functional assessment of the mutational effects of human IRAK4 and MyD88 genes.
PMID:25416956
A proteome-scale map of the human interactome network.
PMID:25502805
A massively parallel pipeline to clone DNA variants and examine molecular phenotypes of human disease mutations.
PMID:25910212
Widespread macromolecular interaction perturbations in human genetic disorders.
PMID:26592460
SARM modulates MyD88-mediated TLR activation through BB-loop dependent TIR-TIR interactions.
PMID:26752465
Increased Expression of Interleukin-36, a Member of the Interleukin-1 Cytokine Family, in Inflammatory Bowel Disease.
PMID:26871637
Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing.
PMID:27107012
Pooled-matrix protein interaction screens using Barcode Fusion Genetics.
PMID:28514442
Architecture of the human interactome defines protein communities and disease networks.
PMID:29281743
HDAC6 controls innate immune and autophagy responses to TLR-mediated signalling by the intracellular bacteria Listeria monocytogenes.
PMID:29892012
An interactome perturbation framework prioritizes damaging missense mutations for developmental disorders.
PMID:29990310
Selective disruption of TLR2-MyD88 interaction inhibits inflammation and attenuates Alzheimer's pathology.
PMID:30256449
Understanding early TLR signaling through the Myddosome.
PMID:30883606
The TLR4 adaptor TRAM controls the phagocytosis of Gram-negative bacteria by interacting with the Rab11-family interacting protein 2.
PMID:31164412
T-Cell Deletion of MyD88 Connects IL17 and IκBζ to RAS Oncogenesis.
PMID:31515488
Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations.
PMID:32296183
A reference map of the human binary protein interactome.
PMID:33718825
SARS-CoV-2, SARS-CoV-1, and HIV-1 derived ssRNA sequences activate the NLRP3 inflammasome in human macrophages through a non-classical pathway.
PMID:33961781
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
PMID:35512704
Systematic discovery of mutation-directed neo-protein-protein interactions in cancer.
PMID:36232715
PAUF Induces Migration of Human Pancreatic Cancer Cells Exclusively via the TLR4/MyD88/NF-κB Signaling Pathway.
PMID:36865541
Regulation of innate immune signaling by IRAK proteins.
PMID:36964784
BacSp222 bacteriocin as a novel ligand for TLR2/TLR6 heterodimer.
PMID:37971847
USP3 plays a critical role in the induction of innate immune tolerance.
PMID:38605168
OTUD5 promotes the inflammatory immune response by enhancing MyD88 oligomerization and Myddosome formation.
PMID:38961291
Molecular definition of the endogenous Toll-like receptor signalling pathways.
PMID:40980882
TLR9 signaling requires ligand-induced phosphorylation of two specific tyrosine residues by EGFR and Syk.
Reactome:R-HSA-166072
MyD88 forms a complex with TIRAP:activated TLR2/4
Reactome:R-HSA-166082
IRAK4 binds to the activated TLR receptor:TIRAP:MyD88 complex
Reactome:R-HSA-166091
IRAK1 or IRAK2 binds to the activated IRAK4 :activated TLR:MyD88:TIRAP complex
Reactome:R-HSA-166119
First phosphorylation of IRAK1 by IRAK4 bound to activated TLR:MyD88:Mal
Reactome:R-HSA-166284
Second phosphorylation of IRAK1 by IRAK4 bound to activated TLR:MyD88:TIRAP
Reactome:R-HSA-166286
Multiple IRAK1 autophosphorylation steps
Reactome:R-HSA-166362
Dissociation of hp-IRAK1:TRAF6 from the activated TLR:oligo-Myd88:TIRAP:p-IRAK4 complex
Reactome:R-HSA-166363
TRAF6 binds to hp- IRAK1
Reactome:R-HSA-193665
MYD88 dissociates
Reactome:R-HSA-193695
IRAK interacts with TRAF6
Reactome:R-HSA-2262775
Dissociation of p-IRAK2:TRAF6 from the activated TLR:oligo-Myd88:TIRAP:p-IRAK4 complex
Reactome:R-HSA-2262777
TRAF6 binds to p-IRAK2
Reactome:R-HSA-3134953
DHX36 or DHX9 binds MyD88
Reactome:R-HSA-446634
IRAK4 is activated by autophosphorylation
Reactome:R-HSA-446648
IL1R1:IL1:IL1RAP:MYD88 homodimer binds IRAK4
Reactome:R-HSA-446684
IRAK2 is phosphorylated downstream of IRAK4 following IL1 receptor activation
Reactome:R-HSA-446692
IRAK1 binds to MYD88 within the IL1R complex
Reactome:R-HSA-446694
IRAK4 phosphorylates IRAK1
Reactome:R-HSA-446701
IRAK4-activated IRAK1 autophosphorylates
Reactome:R-HSA-446862
Hyperphosphorylated IRAK1 associates with TRAF6
Reactome:R-HSA-446868
The Interleukin 1 receptor complex binds Tollip
Reactome:R-HSA-446894
TRAF6 binding leads to IRAK1:TRAF6 release
Reactome:R-HSA-450133
IL1R1:IL1:IL1RAP binds MYD88 homodimer
Reactome:R-HSA-5602316
Defective MyD88 does not oligomerize within the complex of activated TLR5
Reactome:R-HSA-5602353
Defective IRAK4 does not bind MyD88:MAL:BTK:activated TLR2/4
Reactome:R-HSA-5602383
Defective MyD88 does not oligomerize within the activated TLR2/4 complex
Reactome:R-HSA-5602603
IRAK4 deficiency blocks formation of the MyD88-IRAK4 Myddosome in the TLR5 pathway
Reactome:R-HSA-5602606
Defective MyD88 does not bind MAL(TIRAP):TLR2/4
Reactome:R-HSA-937022
IRAK4 autophosphorylation in the complex with activated TLR:MyD88:TIRAP
Reactome:R-HSA-937059
Phosphorylation of IRAK2 bound to the activated IRAK4:MyD88 oligomer:TIRAP:activated TLR complex
Reactome:R-HSA-937079
MyD88 oligomerization within the complex of activated TLR:TIRAP:MyD88
Reactome:R-HSA-975098
MyD88 oligomerization within the complex of activated TLR 7/8 or 9 : MyD88
Reactome:R-HSA-975100
Dissociation of hp-IRAK1/or IRAK2:TRAF6-oligomer from the p-IRAK4 :oligo-Myd88:activated TLR7/8 or 9 complex
Reactome:R-HSA-975106
Phosphorylation and release of IRF7 upon TLR7/8 or 9 activation
Reactome:R-HSA-975111
TRAF6 binds to hp- IRAK1/or p-IRAK2:p-IRAK4:MyD88:activated TLR7/8 or 9
Reactome:R-HSA-975115
IRAK1/or IRAK2 binds to the activated IRAK4 :MyD88:activated TLR 7/8 or 9
Reactome:R-HSA-975118
TRAF6 ubiquitinqtes IRF7 within the activated TLR7/8 or 9 complex
Reactome:R-HSA-975125
Multiple IRAK1 autophosphorylation steps within the complex pIRAK4:MyD88:activated TLR7/8 or 9
Reactome:R-HSA-975134
Second phosphorylation of IRAK1 by IRAK4 bound to MyD88: activated TLR 7/8 or 9
Reactome:R-HSA-975156
IRAK4 binds to the activated TLR7/8 or 9 receptor:MyD88 complex
Reactome:R-HSA-975160
Phosphorylation of IRAK2 bound to the activated IRAK4:MyD88 oligomer:activated TLR 7/8 or 9
Reactome:R-HSA-975170
IRAK4 autophosphorylation in the complex with MyD88:activated TLR 7/8 or 9
Reactome:R-HSA-975175
MyD88 interacts with the activated TLR receptor 7, 8 or 9
Reactome:R-HSA-975180
First phosphorylation of IRAK1 by IRAK4 bound to MyD88:activated TLR 7/8 or 9
Reactome:R-HSA-975188
TRAF6 interacts with IRF7 upon TLR7/8 or 9 activation
Reactome:R-HSA-975852
IRAK1/or IRAK2 binds to the activated IRAK4 :oligo MyD88:activated TLR5 or 10 complex
Reactome:R-HSA-975853
Multiple IRAK1 autophosphorylation within the complex p-IRAK4:oligo MyD88:activated TLR
Reactome:R-HSA-975857
TRAF6 binds to hp- IRAK1 or p-IRAK2
Reactome:R-HSA-975861
Phosphorylation of IRAK2 bound to the activated IRAK4:MyD88 oligomerl:activated TLR5 or 10 complex
Reactome:R-HSA-975865
IRAK4 autophosphorylation within the complex activated TLR:MyD88
Reactome:R-HSA-975866
MyD88 forms a complex with the activated TLR receptor
Reactome:R-HSA-975873
IRAK4 binds to MyD88 bound to the activated TLR5 or 10 receptor
Reactome:R-HSA-975874
Second phosphorylation of IRAK1 by IRAK4 bound to MyD88:activated TLR complex
Reactome:R-HSA-975878
First phosphorylation of IRAK1 by IRAK4 bound to MyD88:activated TLR
Reactome:R-HSA-975879
Dissociation of hp-IRAK1:TRAF6 or IRAK2:TRAF6-oligomer from the activated TLR5 or 10:oligo-Myd88:p-IRAK4 complex
Reactome:R-HSA-975880
MyD88 oligomerization within the complex of activated TLR:MyD88
PMID:15890643
The pro-atherogenic cytokine interleukin-18 induces CXCL16 expression in rat aortic smooth muscle cells via MyD88, interleukin-1 receptor-associated kinase, tumor necrosis factor receptor-associated factor 6, c-Src, phosphatidylinositol 3-kinase, Akt, c-Jun N-terminal kinase, and activator protein-1 signaling.