Gene Ontology annotation through association of InterPro records with GO terms
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
Electronic Gene Ontology annotations created by ARBA machine learning models
Combined Automated Annotation using Multiple IEA Methods
AP-4, a novel protein complex related to clathrin adaptors.
-
Original identification and characterization of AP-4 complex
"Here we report the identification and characterization of AP-4, a novel protein complex related to the heterotetrameric AP-1, AP-2, and AP-3 adaptors"
-
Established beta4 (AP4B1) as component of heterotetrameric complex with epsilon, mu4, and sigma4
"Gel filtration, sedimentation velocity, and immunoprecipitation experiments revealed that beta4 is a component of a multisubunit complex (AP-4) that also contains the sigma4 polypeptide and two additional adaptor subunit homologs named mu4 (mu-ARP2) and epsilon."
Characterization of a fourth adaptor-related protein complex.
-
Independent characterization of AP-4 complex demonstrating non-clathrin coat formation
"Immunogold electron microscopy indicates that AP-4 is associated with nonclathrin-coated vesicles in the region of the trans-Golgi network."
-
Showed mu4 binds tyrosine-based sorting signals for cargo recognition
"The mu4 subunit of the complex specifically interacts with a tyrosine-based sorting signal, indicating that, like the other three AP complexes, AP-4 is involved in the recognition and sorting of cargo proteins with tyrosine-based motifs."
Multivariate proteomic profiling identifies novel accessory proteins of coated vesicles.
Bivalent Motif-Ear Interactions Mediate the Association of the Accessory Protein Tepsin with the AP-4 Adaptor Complex.
-
Mapped two peptide motifs in tepsin that bind beta4 and epsilon ear domains
"Using a variety of protein interaction assays, we found that tepsin comprises two phylogenetically conserved peptide motifs, [GS]LFXG[ML]X[LV] and S[AV]F[SA]FLN, within its C-terminal unstructured region, which interact with the C-terminal ear (or appendage) domains of the β4 and ϵ subunits of AP-4, respectively."
-
Demonstrated AP-4 forms a non-clathrin coat at TGN
"The heterotetrameric (ϵ-β4-μ4-σ4) complex adaptor protein 4 (AP-4) is a component of a non-clathrin coat involved in protein sorting at the trans-Golgi network (TGN)."
Molecular Basis for the Interaction Between AP4 β4 and its Accessory Protein, Tepsin.
-
Determined NMR structure and binding site for tepsin on beta4 ear domain
"We show that tepsin harbors a hydrophobic sequence, LFxG[M/L]x[L/V], in its unstructured C-terminus, which binds directly and specifically to the C-terminal β4 appendage domain."
-
Demonstrated AP-4 forms non-clathrin vesicles at TGN
"The adaptor protein 4 (AP4) complex (ϵ/β4/μ4/σ4 subunits) forms a non-clathrin coat on vesicles departing the trans-Golgi network."
AP4 transports APP from trans-Golgi network to endosome lumen
Deep research review of AP4B1 function
-
AP-4 mediates export of ATG9A from TGN to support autophagosome formation
"AP-4 mediates signal-dependent export of selected cargos--most prominently ATG9A--from the TGN to endosomal/peripheral compartments that support autophagosome formation."
-
Loss of AP-4 causes ATG9A retention at TGN linking to autophagy defects
"Loss of AP-4 causes ATG9A retention in the TGN and alters LC3B lipidation readouts, linking AP-4 to autophagy pathways."
Deep research review of AP4B1 function (cyberian)
-
DAGLB is an AP-4 cargo protein critical for endocannabinoid signaling in neurons
"A landmark 2022 study by Davies et al. identified DAGLB as an AP-4 cargo protein with significant implications for neuronal development [davies-2022-daglb-endocannabinoid-abstract]. DAGLB is a serine lipase that hydrolyzes diacylglycerol (DAG) to generate 2-arachidonoylglycerol (2-AG), the most abundant endocannabinoid in the brain."
-
AAGAB chaperone is required for AP-4 complex assembly and stability
"Mattera et al. demonstrated that AAGAB directly binds to the ε and σ4 subunits of AP-4 and stabilizes both endogenous and recombinant AP-4 subunits by preventing their proteasomal degradation [mattera-2022-aagab-chaperone-abstract]."
-
AP-4 regulates lysosome biogenesis via Sortilin trafficking
"Recent work by Majumder et al. showed that AP-4 regulates the trafficking of Sortilin (SORT1) from the TGN to endo-lysosomes in neurons [majumder-2022-lysosome-abstract]."
-
SERINC proteins are AP-4 cargoes with lipid scramblase activity
"Proteomic studies identified these multipass transmembrane proteins as AP-4 cargoes [davies-2018-ap4-vesicles-abstract]. Both proteins colocalize with ATG9A and exhibit altered localization in AP-4-deficient cells."
-
AP-4 recognizes YXXOE consensus sorting signals
"AP-4 recognizes a distinct type of tyrosine-based sorting signal with the consensus sequence YXXØE, where Ø represents a bulky hydrophobic residue [burgos-2010-app-sorting-abstract][mattera-2017-atg9a-export-abstract]."
Deep research review of AP4B1 function (perplexity)
-
Tepsin has specialized AP-4 accessory roles beyond passive coat assembly.
"Tepsin depletion in cells results in partial accumulation of ATG9A at the TGN but causes distinct phenotypes compared to complete AP-4 depletion, indicating that tepsin has specialized functions beyond simply serving as a passive coat component, possibly participating in vesicle internalization or cargo delivery"