Affinage mechanistic annotation for ATAD3C (human) Affinage Affinage (Claude Sonnet reading pass + Opus synthesis pass) 4 citations

Affinage mechanistic annotation for ATAD3C (human)

Current model (mechanistic narrative)

ATAD3C is an integral mitochondrial inner membrane protein that exposes its carboxy-terminus to the intermembrane space and functions as a dominant-negative regulator of the ATAD3A oligomeric complex, thereby modulating mitochondrial oxidative phosphorylation PMID:38092275. ATAD3C monomers incorporate into ATAD3A complexes and reduce their size, and its overexpression in fibroblasts lowers oxygen consumption, increases cellular ROS, and shifts respiratory chain organization toward dimeric Complex III at the expense of supercomplex assembly PMID:38092275. The locus is also a site of pathogenic genomic rearrangement: non-allelic homologous recombination and de novo duplications generate stable chimeric ATAD3A/ATAD3C fusion proteins that disrupt ATAD3 complex composition, reduce Complex I and its activity in patient tissue, and perturb mitochondrial DNA organization and cellular cholesterol homeostasis through dominant-negative mechanisms [PMID:32004445, PMID:33575671, PMID:28549128]. Beyond these complex-level and fusion-driven effects, no enzymatic activity or independent molecular function for ATAD3C itself has been characterized in the available corpus.

Affinage mechanism profile (Affinage's own GO/Reactome grounding)

Dated findings (citation-anchored)

Year Confidence Finding PMIDs Journal
2023 Medium ATAD3C is an integral membrane protein that exposes its carboxy-terminus to the mitochondrial intermembrane space. Overexpression of ATAD3C (but not ATAD3A) in fibroblasts decreased cell proliferation and oxygen consumption rate and increased cellular ROS, due to incorporation of ATAD3C monomers into the ATAD3A complex in the mitochondrial membrane, reducing its size. ATAD3C expression also led to increased accumulation of respiratory chain dimeric Complex III in the inner membrane at the expense of its assembly into respiratory supercomplexes, demonstrating a dominant-negative role for ATAD3C in regulating ATAD3A function and mitochondrial OXPHOS. PMID:38092275 Free radical biology & medicine
2020 Medium Heterozygous 67 kb duplications at the ATAD3 locus, mediated by non-allelic homologous recombination between ATAD3A exon 11 and ATAD3C exon 7, produce a chimeric ATAD3A/ATAD3C fusion gene. The fusion protein product is expressed and stable in patient fibroblasts, lacks key functional residues, and causes perturbed cholesterol and mitochondrial DNA organization similar to severe ATAD3A deficiency, consistent with a dominant-negative mechanism. PMID:32004445 American journal of human genetics
2020 Medium De novo duplications in the ATAD3 locus produce chimeric ATAD3A/ATAD3C fusion proteins that alter ATAD3 complex composition and cause a striking reduction in mitochondrial Complex I and its activity in heart tissue, acting through a dominant-negative mechanism. PMID:33575671 Med (New York, N.Y.)
2017 Medium Biallelic deletions generating chimeric ATAD3B/ATAD3A fusion genes (with genomic rearrangements affecting ATAD3C/ATAD3B on one allele) cause mitochondrial DNA abnormalities in patient fibroblasts, associated with altered cholesterol metabolism markers, establishing that the ATAD3 gene cluster including ATAD3C participates in the integration of mitochondrial DNA organization and cellular cholesterol homeostasis. PMID:28549128 Brain : a journal of neurology

Citations