Gene Ontology annotation based on Enzyme Commission mapping

TreeGrafter-generated GO annotations

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.

file:PSEPK/fcs/fcs-hypotheses/function-hypothesis-go-0031956/openscientist.md

Blinded OpenScientist function-assignment report (TreeGrafter audit)

file:projects/P_PUTIDA/deep-research/PSEPK__hydroxycinnamate-vanillate-catabolism__ppu00627-deep-research-openscientist.md

OpenScientist PSEPK hydroxycinnamate and vanillate catabolism synthesis

The species-aware report confirms Fcs as the directly validated first reaction of the KT2440 route.

file:modules/hydroxycinnamate_vanillate_catabolism.yaml

Hydroxycinnamate and vanillate catabolism module

PMID:12764569

Functional analyses of genes involved in the metabolism of ferulic acid in Pseudomonas putida KT2440.

file:PSEPK/fcs/fcs-hypotheses/function-hypothesis-go-0031956/falcon.md

Existing falcon Fcs function-hypothesis report

file:PSEPK/fcs/fcs-deep-research-falcon.md

Fcs deep-research literature synthesis