file:human/BAG6/BAG6-notes.md
BAG6 review notes
file:human/BAG6/BAG6-deep-research-falcon.md
Falcon deep research report for BAG6
GO_REF:0000024
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
GO_REF:0000033
Annotation inferences using phylogenetic trees
GO_REF:0000044
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
GO_REF:0000052
Gene Ontology annotation based on curation of immunofluorescence data from the Human Protein Atlas
GO_REF:0000107
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
GO_REF:0000120
Combined Automated Annotation using Multiple IEA Methods
PMID:20676083
A ribosome-associating factor chaperones tail-anchored membrane proteins.
PMID:21636303
A ubiquitin ligase-associated chaperone holdase maintains polypeptides in soluble states for proteasome degradation.
PMID:21743475
Protein targeting and degradation are coupled for elimination of mislocalized proteins.
PMID:23129660
SGTA antagonizes BAG6-mediated protein triage.
PMID:23665563
A ubiquitin-like domain recruits an oligomeric chaperone to a retrotranslocation complex in endoplasmic reticulum-associated degradation.
PMID:24424410
USP13 antagonizes gp78 to maintain functionality of a chaperone in ER-associated degradation.
PMID:24981174
Cytosolic quality control of mislocalized proteins requires RNF126 recruitment to Bag6.
PMID:25535373
Bag6 complex contains a minimal tail-anchor-targeting module and a mock BAG domain.
PMID:25713138
Structure of a BAG6 (Bcl-2-associated athanogene 6)-Ubl4a (ubiquitin-like protein 4a) complex reveals a novel binding interface that functions in tail-anchored protein biogenesis.
PMID:29042515
Structural basis for regulation of the nucleo-cytoplasmic distribution of Bag6 by TRC35.
PMID:17403783
HLA-B-associated transcript 3 (Bat3)/Scythe is essential for p300-mediated acetylation of p53.
PMID:18055229
Human leukocyte antigen-B-associated transcript 3 is released from tumor cells and engages the NKp30 receptor on natural killer cells.
PMID:18852879
Dendritic cells release HLA-B-associated transcript-3 positive exosomes to regulate natural killer function.
PMID:14667819
Analysis of a high-throughput yeast two-hybrid system and its use to predict the function of intracellular proteins encoded within the human MHC class III region.
PMID:14960581
Ricin triggers apoptotic morphological changes through caspase-3 cleavage of BAT3.
PMID:16189514
Towards a proteome-scale map of the human protein-protein interaction network.
PMID:18765639
BAT3 and SET1A form a complex with CTCFL/BORIS to modulate H3K4 histone dimethylation and gene expression.
PMID:19946888
Defining the membrane proteome of NK cells.
PMID:21903422
Mapping a dynamic innate immunity protein interaction network regulating type I interferon production.
PMID:22046132
The SARS-coronavirus-host interactome: identification of cyclophilins as target for pan-coronavirus inhibitors.
PMID:22807449
The stalk domain and the glycosylation status of the activating natural killer cell receptor NKp30 are important for ligand binding.
PMID:23246001
SGTA recognizes a noncanonical ubiquitin-like domain in the Bag6-Ubl4A-Trc35 complex to promote endoplasmic reticulum-associated degradation.
PMID:25036637
A quantitative chaperone interaction network reveals the architecture of cellular protein homeostasis pathways.
PMID:25416956
A proteome-scale map of the human interactome network.
PMID:26496610
A human interactome in three quantitative dimensions organized by stoichiometries and abundances.
PMID:26876100
Selective Binding of AIRAPL Tandem UIMs to Lys48-Linked Tri-Ubiquitin Chains.
PMID:27113755
UBQLN4 recognizes mislocalized transmembrane domain proteins and targets these to proteasomal degradation.
PMID:31515488
Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations.
PMID:33961781
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
PMID:35271311
OpenCell: Endogenous tagging for the cartography of human cellular organization.
PMID:40105103
Definition of the human mitochondrial TOM interactome reveals TRABD as a new interacting protein.
PMID:26565908
Pre-emptive Quality Control Protects the ER from Protein Overload via the Proximity of ERAD Components and SRP.