Gene Ontology annotation through association of InterPro records with GO terms
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
Androglobin: a chimeric globin in metazoans that is preferentially expressed in Mammalian testes.
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The human androglobin globin domain was recombinantly expressed and shows an absorption spectrum characteristic of hexacoordinate heme iron, establishing heme binding for the human protein directly rather than by inference from the family.
"The recombinantly expressed human globin domain exhibits an absorption spectrum characteristic of hexacoordination of the heme iron atom."
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The N-terminal region is homologous to the catalytic domain II of human calpain-7, which is the origin of the InterPro IPR001300 match and hence of the two proteolysis-related IEA rows.
"The calpain-like region is homologous to the catalytic domain II of the large subunit of human calpain-7."
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The globin domain is a genuine myoglobin-like fold that has been rearranged and split, which is why the two halves receive separate UniProt Domain features.
"The globin domain satisfies the criteria of a myoglobin-like fold but is rearranged and split into two parts."
The circularly permuted globin domain of androglobin exhibits atypical heme stabilization and nitric oxide interaction.
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Oxygen binding by the androglobin globin domain is demonstrable but transient, and the authors conclude from the autoxidation rate that it is not a physiological function. This is the evidence behind keeping GO:0019825 as non-core and behind not proposing GO:0005344 oxygen carrier activity or GO:0019826 oxygen sensor activity.
"This remarkable autoxidation rate strongly suggests that O2 binding is not a physiological function of the protein except for the possibility of oxygen sensing."
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The measured chemistry points to nitric oxide handling rather than oxygen, which is the basis for the two proposed NEW molecular-function annotations.
"With rapid autoxidation and high nitrite reductase activity, the globin appears to be more tailored toward nitric oxide homeostasis or buffering."
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Androglobin binds nitric oxide as a five-coordinate complex, which is highly unusual among globins and characteristic of nitric-oxide storage hemoproteins.
"Adgb binds NO as a five-coordinate heme iron"
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The distal heme-iron ligand of androglobin is a glutamine, not a histidine, stated explicitly in contrast with cytoglobin. This contradicts UniProt's bis-histidyl FUNCTION text and agrees with UniProt's own feature table.
"X = His for Cygb and Gln for Adgb"
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A tyrosine replaces the otherwise invariant CD1 phenylalanine, a further departure from canonical eukaryotic globin architecture that affects heme stabilisation.
"Exceptional for eukaryotic globins is that a tyrosine takes the place of the highly conserved phenylalanine in the CD1 position, a critical point in stabilizing the heme."
Calmodulin interacts with androglobin and regulates the nitrite reductase activity.
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Calmodulin binding at the IQ motif increases the nitrite reductase catalytic efficiency of the androglobin globin domain roughly two-fold, linking the calcium-sensor module directly to the heme chemistry.
"the binding of CaM enhanced the nitrite reductase activity of Adgb"
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Independent confirmation that the distal heme ligand is a glutamine and the proximal ligand a histidine, in a construct whose numbering maps onto UniProt Q792 and H824.
"These observations suggest that Gln30 in the heme distal site may coordinate to the heme iron in the ferrous state."
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The circularly permuted globin domain folds correctly with heme and engages calmodulin through the IQ motif, supporting both the heme-binding and the proposed calmodulin-binding annotations.
"The circularly permutated globin domain of Adgb was well folded with a heme group, which can interact with CaM via the IQ motif."
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The authors themselves qualify whether nitrite reduction is a natural function of androglobin, which is recorded as an explicit caveat on the proposed GO:0098809 annotation.
"it remains unclear whether this is a natural function of Adgb"
Spectroscopic studies on human androglobin regulated by its heme distal Gln12 and IQ motif via interaction with calmodulin.
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A third independent confirmation that the heme distal residue of human androglobin is a glutamine, here established by mutagenesis rather than by inference - the authors generate Q12H and Q12Y substitutions and show that the distal residue controls both stability and nitrite reductase activity, and that deleting the IQ motif abolishes calmodulin-mediated activation.
"investigated the role of its heme distal residue Gln12 through the generation of Q12H and Q12Y mutants"
Androglobin, a chimeric mammalian globin, is required for male fertility.
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Adgb-null mice are infertile and androglobin localises to the sperm flagellum, annulus and midpiece. This is the source of the mouse IDA annotations that both the PAINT IBA rows and the Ensembl Compara rows on human ADGB are transferred from.
"it locates to the sperm flagellum, the annulus, and the midpiece, and that it is crucial for male fertility and sperm formation"
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The proteolysis claim is stated by the authors as a suggestion from in vitro data about overexpressed proteins, not as a demonstration that androglobin catalyses the cleavage. This is the wording the MARK_AS_OVER_ANNOTATED call on GO:0006508 rests on.
"Collectively, these in vitro data suggest a scenario in which overexpressed ADGB proteolytically contributes to cleavage of overexpressed SEPT10 in an O2-independent but CaM-dependent manner."
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A construct spanning the globin and IQ domains binds calmodulin robustly by co-immunoprecipitation, whereas full-length androglobin did not under basal conditions, suggesting the interaction is conformationally gated by the long C-terminal region.
"a truncated construct covering the globin and IQ domains displayed robust ADGB-CaM interaction"
ADGB variants cause asthenozoospermia and male infertility.
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Human ADGB variants causing asthenozoospermia disrupt binding of androglobin to calmodulin. This is the human-specific evidence behind the proposed GO:0005516 annotation, and UniProt records the same interaction with ECO:0000269 against the human entry.
"The variants disrupted the binding of ADGB to calmodulin."
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CFAP69 and SPEF2 were confirmed as androglobin-binding proteins, connecting androglobin to the ciliary and flagellar assembly machinery.
"In particular, CFAP69 and SPEF2 were confirmed to bind to ADGB."
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Adgb-null mice show abnormal spermatogenesis with malformation of elongating and elongated spermatids, the IMP that both the GO:0007286 IBA and Compara rows derive from.
"Spermatogenesis was also abnormal, with malformation of both elongating and elongated spermatids"
Whole-exome sequencing identifies ADGB as a novel causative gene for male infertility in humans: from motility to fertilization.
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Bi-allelic ADGB variants in three unrelated Han Chinese men cause severe asthenoteratozoospermia with acrosome and flagellum malformations on light and electron microscopy, providing human loss-of-function corroboration for the spermatogenesis and flagellum annotations transferred from mouse.
"the spermatozoa from patients harboring ADGB variants showed multiple acrosome and flagellum malformations under light and electron microscopy"
[Whole Exome Sequencing Identified Novel Pathogenic Mutations of ADGB in Patients With Oligoasthenozoospermia].
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Immunofluorescence places androglobin in the acrosome and flagella of human and mouse spermatogenic cells, with expression rising after puberty. The flagellar localisation corroborates the transferred GO:0036126 annotation directly in human; the acrosomal localisation is not currently captured by GOA and is raised as a question rather than proposed, since it rests on this single study.
"ADGB was found to be highly expressed after puberty in both human and mouse testes and was localized to the acrosome and flagella of spermatogenic cells."
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TTC29 and CFAP47 were confirmed as androglobin interactors by co-immunoprecipitation, extending the set of ciliary and flagellar partners beyond septin 10, CFAP69 and SPEF2.
"Co-immunoprecipitation experiments confirmed TTC29 and CFAP47 as interacting proteins of ADGB."
Composition and function of the C1b/C1f region in the ciliary central apparatus.
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Androglobin is a component of the C1b/C1f supercomplex of the ciliary central apparatus in Tetrahymena, alongside Spef2A and Cfap69 - the same proteins that were later found to bind androglobin in mammals. This supports the motile-cilium localisation outside the sperm context.
"C1b/C1f contains several evolutionarily conserved proteins: Spef2A, Cfap69, Cfap246/LRGUK, Adgb/androglobin"
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Deleting Adgb caused only minor changes in ciliary motility, unlike deletion of Spef2A or Cfap69 which abolished the entire C1b projection. Androglobin is therefore a resident of the structure rather than a core structural or motor component, which is consistent with annotating localisation but not a motility function.
"Loss of either Cfap246 or Adgb caused only minor alterations in ciliary motility."
Androglobin gene expression patterns and FOXJ1-dependent regulation indicate its functional association with ciliogenesis.
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Across human tissues, ADGB expression is specifically associated with motile-ciliated cell types beyond the testis, including the female reproductive tract, lung and brain, supporting the motile-cilium annotation as more than a sperm-flagellum artefact.
"specifically being associated with cell types forming motile cilia"
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Overexpressing full-length ADGB increases the number of ciliated cells, and the ADGB promoter is a direct target of the ciliogenic transcription factors FOXJ1 and RFX2.
"cell culture studies indicated an ADGB-dependent increase in the number of ciliated cells upon overexpression of the full-length protein, confirming a ciliogenesis-associated role of ADGB in mammals"
Congenital heart defects caused by FOXJ1.
Expression analysis of androglobin and its influence on the transcriptome in cancer.