GO_REF:0000002

Gene Ontology annotation through association of InterPro records with GO terms

InterPro-derived ATP binding, broad DNA repair, and DNA recombination process annotations reviewed against LigD NHEJ-domain context.

GO_REF:0000120

Combined Automated Annotation using Multiple IEA Methods

Combined IEA source for ATP-dependent DNA ligase activity; accepted as the main LigD catalytic activity.

file:PSEPK/ligD/ligD-uniprot.txt

UniProtKB entry for PSEPK ligD

file:interpro/panther/PTHR42705/PTHR42705-paint.tsv

PANTHER PTHR42705 PAINT ancestral-function export

PTN001627042 carries IBD assertions for GO:0003887, GO:0003910, and GO:0006303 from experimentally characterized LigD seeds.

PMID:16023671

Domain structure of a NHEJ DNA repair ligase from Mycobacterium tuberculosis.

PMID:15897197

Novel 3'-ribonuclease and 3'-phosphatase activities of the bacterial non-homologous end-joining protein, DNA ligase D.

PMID:20018881

Gap filling activities of Pseudomonas DNA ligase D (LigD) polymerase and functional interactions of LigD with the DNA end-binding Ku protein.

"Pseudomonas Ku stimulates POL-catalyzed ribonucleotide addition to a plasmid DSB end"
"repair driven by Ku and DNA ligase D (LigD)."

PMID:25942369

NHEJ enzymes LigD and Ku participate in stationary-phase mutagenesis in Pseudomonas putida.

PMID:36475478

[Repair of Double-Stranded DNA Breaks Generated by CRISPR-Cas9 in Pseudomonas putida KT2440].

file:PSEPK/ligD/ligD-deep-research-openscientist.md

OpenScientist research report for PSEPK ligD

Retrieval synthesis confirmed the target domain architecture and identified direct P. putida genetics alongside ortholog biochemistry.