Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Gene Ontology annotation based on curation of immunofluorescence data
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
SALMs 1-4 bind reticulon 3
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Reactome models a relatively weak interaction of human SALM1/LRFN2 with RTN3, in contrast to the tighter SALM2 and SALM3 associations.
"In the brain, reticulon 3 (RTN3) tightly associates with SALM2 and SALM3 to form a complex, and interacts relatively weakly with SALM1 and SALM4."
SALMs 1-3 bind to PSD-95 family members
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Reactome models SALM1/LRFN2 binding to DLG-family postsynaptic scaffolds while explicitly restricting presynaptic-induction activity to SALM3 and SALM5.
"SALM3 and SALM5, but not other SALMs, induce presynaptic differentiation in contacting axons (Mah et al. 2010)."
SALMs1-3 bind each other in cis interactions
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Reactome models SALM1, SALM2, and SALM3 homo- and heteromerization in cis, without asserting trans-cellular SALM1 adhesion.
"SALM1, SALM2, and SALM3 form homo- and heteromeric complexes in a cis manner."
SALM1 binds NMDA receptor
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Reactome models both direct extracellular SALM1-GRIN1 association and indirect NMDA-receptor recruitment through PSD-95.
"SALM1 can directly interact with the extracellular domain of the NR1 subunit of NMDA receptor or indirectly by binding to PSD-95, which may recruit NMDA receptor via the NR2 subunits of NMDA receptors"
A novel family of adhesion-like molecules that interacts with the NMDA receptor.
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Rat SALM1 is a single-pass neuronal membrane protein with extracellular LRR, Ig-like, and fibronectin type III domains and a cytoplasmic PDZ-binding tail.
"The family members, SALM1-SALM4, have a single transmembrane (TM) domain and contain extracellular leucine-rich repeats, an Ig C2 type domain, a fibronectin type III domain, and an intracellular postsynaptic density-95 (PSD-95)/Discs large/zona occludens-1 (PDZ) binding domain, which is present on all members except SALM4."
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Endogenous rat-brain SALM1 associates with PSD-95-family scaffolds and occurs in synaptic-membrane and postsynaptic-density fractions as well as axons and dendrites.
"SALM1 interacts with PSD-95, synapse-associated protein 102 (SAP102), and SAP97 based on coimmunoprecipitation of detergent-solubilized brain. Distribution studies show that SALM1 is present in synaptic membrane and postsynaptic density fractions but is also distributed in axons and dendrites."
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SALM1 overexpression in rat hippocampal neurons recruits NMDA receptors and PSD-95 to dendritic puncta.
"Overexpression of SALM1 in 14 DIV neurons recruits NMDA receptors (NR) and PSD-95 to dendritic puncta."
Comparative analysis of structure, expression and PSD95-binding capacity of Lrfn, a novel family of neuronal transmembrane proteins.
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Mouse and human Lrfn proteins share an extracellular LRR-Ig-FNIII region and span the plasma membrane with an extracellular N terminus.
"Lrfn1-5 commonly encode glycoproteins spanning the plasma membrane, with their N-terminus located on the extracellular side."
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Lrfn2 expression begins in mature neural cells, and its C-terminal tail binds PSD95 PDZ domains and redistributes PSD95 to the cell periphery.
"In the course of development, expression of Lrfn1, Lrfn3, and Lrfn4 started from immature neural cells, whereas that of Lrfn2 and Lrfn5 was limited to mature ones. Lrfn1-5 commonly encode glycoproteins spanning the plasma membrane, with their N-terminus located on the extracellular side. C-termini of Lrfn1, Lrfn2 and Lrfn4 were bound by PDZ domains of postsynaptic protein PSD95, re-distributing PSD95 to cell periphery where the Lrfn proteins were detected."
The SALM family of adhesion-like molecules forms heteromeric and homomeric complexes.
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In rat brain, SALM1-3 strongly co-immunoprecipitate, supporting cis-family complexes.
"In brain, we found that SALMs 1-3 strongly co-immunoprecipitated with each other, whereas SALMs 4 and 5 did not, suggesting that SALMs 4 and 5 mainly form homomeric complexes."
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SALM1-3 did not form trans-cellular associations; only SALM4 and SALM5 formed homophilic trans associations in the tested system.
"Both SALMs 4 and 5 formed homophilic, but not heterophilic associations, whereas no trans associations were formed by the other SALMs."
Synaptic adhesion-like molecules (SALMs) promote neurite outgrowth.
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SALM1 overexpression promotes neurite outgrowth in cultured rat hippocampal neurons, and its C-terminal PDZ-binding domain is required for most measured outgrowth effects.
"Over-expression of each SALM resulted in enhanced neurite outgrowth, but with different phenotypes. Neurite outgrowth could be reduced by applying antibodies targeting the extracellular leucine rich regions of SALMs and with RNAi. Through over-expression of deletion constructs, we found that the C-terminal PDZ binding domains of SALMs 1-3 are required for most aspects of neurite outgrowth."
Reticulon 3 is an interacting partner of the SALM family of adhesion molecules.
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A yeast two-hybrid screen with the SALM1 extracellular region recovered full-length RTN3A1, and the interaction mapped to the conserved SALM LRR domain.
"To identify proteins that interact with extracellular domains of SALMs, we carried out yeast two-hybrid screening using the extracellular domain of SALM1 as bait. A clone encoding full-length reticulon 3A1 was isolated. This interaction was shown to occur through the LRR domain, which is found on all SALMs."
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Brain immunoprecipitation detected an RTN3C-sized band with SALM1-4, whereas a separate 90-kDa band associated only with SALM2 and SALM3.
"A 19-kDa band, identified as reticulon 3C, bound to all four SALMs, whereas a 90-kDa band, which did not comigrate with any known reticulon 3 variant, bound to SALMs 2 and 3."
Selected SALM (synaptic adhesion-like molecule) family proteins regulate synapse formation.
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The tested ability to induce presynaptic differentiation belongs to SALM3 and SALM5, not SALM1/LRFN2, and should not be transferred across the family.
"We found that expression of the SALM family proteins SALM3 and SALM5 in nonneural and neural cells induces both excitatory and inhibitory presynaptic differentiation in contacting axons."
Autism-like behaviours and enhanced memory formation and synaptic plasticity in Lrfn2/SALM1-deficient mice.
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Mouse Lrfn2 is enriched in postnatal cortex and hippocampus and occurs in synaptosomal plasma-membrane and postsynaptic-density fractions.
"Lrfn2 expression increased in the postnatal cerebral cortex and hippocampus, (Fig. 1b), and Lrfn2 was the only Lrfn family member that prominently increased in postnatal hippocampus."
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Lrfn2 loss produces structurally immature hippocampal synapses, lowers AMPA/NMDA ratio, and enhances LTP in this mouse line.
"The synapses are structurally and functionally immature with spindle shaped spines, smaller postsynaptic densities, reduced AMPA/NMDA ratio, and enhanced LTP."
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AMPA-receptor surface expression depends on the Lrfn2-PSD-95 interaction in cultured neuronal experiments.
"In vitro experiments reveal that synaptic surface expression of AMPAR depends on the direct interaction between Lrfn2 and PSD-95."
Lrfn2-Mutant Mice Display Suppressed Synaptic Plasticity and Inhibitory Synapse Development and Abnormal Social Communication and Startle Response.
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In an independent mouse Lrfn2 knockout line, hippocampal CA1 neurons showed altered excitatory transmission/plasticity and reduced inhibitory- synapse density and transmission.
"Here, we found that mice lacking SALM1/LRFN2 (Lrfn2-/- mice) show a normal density of excitatory synapses but altered excitatory synaptic function, including enhanced NMDAR-dependent synaptic transmission but suppressed NMDAR-dependent synaptic plasticity in the hippocampal CA1 region. Unexpectedly, SALM1 expression was detected in both glutamatergic and GABAergic neurons and Lrfn2-/- CA1 pyramidal neurons showed decreases in the density of inhibitory synapses and the frequency of spontaneous inhibitory synaptic transmission."
SALM1 controls synapse development by promoting F-actin/PIP2-dependent Neurexin clustering.
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In mouse hippocampal neurons SALM1 occupies both presynaptic and postsynaptic membranes, and depletion from either side impairs excitatory synapse formation.
"We show that SALM1 is present at pre‐ and postsynaptic membranes of mouse hippocampal neurons and that depletion of pre‐ or postsynaptic SALM1 impaired Neuroligin1‐ and Neurexin1β‐mediated excitatory synapse formation and reduced synaptic vesicle clustering, synaptic transmission, and synaptic vesicle release."
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Presynaptic SALM1 promotes cis clustering of neurexin through an F-actin/PIP2-dependent mechanism, rather than by direct SALM1-neurexin binding.
"Together, our data suggest that SALM1 organizes synapse development by promoting F‐actin/PIP2‐dependent cis‐oligomerization of Neurexin at the presynapse."
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SALM1 binds the presynaptic CASK/Mint1/Lin7b organizer through its PDZ- binding tail.
"Together, these data identify SALM1 as a novel binding partner of the CASK/Mint1/Lin7b presynaptic organizer complex, interacting directly with CASK, via its PDZ binding domain."
Sorting nexin-27 regulates AMPA receptor trafficking through the synaptic adhesion protein LRFN2.
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The LRFN2 C-terminal PDZ-binding motif directly binds the SNX27 PDZ domain, with high-micromolar affinity in a purified system.
"This established that the isolated recombinant PDZ domain of SNX27 directly bound to a synthetic peptide corresponding to the LRFN2 PDZ binding motif, S-S-E-W-V-M-E−3-S-T-V−0 with a high micromolar affinity (Kd = 1.6 µM) (Figure 2D)."
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Rat-neuron LRFN2 associates with AMPA receptors, and LRFN2 knockdown lowers surface AMPA-receptor expression, synaptic activity, and hippocampal long-term potentiation.
"Furthermore, LRFN2 associates with AMPA receptors and knockdown of LRFN2 results in decreased surface AMPA receptor expression, reduced synaptic activity, and attenuated hippocampal long-term potentiation."
Cone Synaptic Function is Modulated by the Leucine-Rich Repeat Adhesion Molecule LRFN2.
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Mouse retinal LRFN2 is selectively expressed at cone terminals and colocalizes with depolarizing bipolar-cell signalplex markers.
"LRFN2 is selectively expressed at cone terminals and colocalizes with PNA, and other DBC signalplex members."
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Lrfn2 deficiency selectively reduces bright-flash photopic ERG b-wave amplitude, supporting a role in transmission from cones to cone depolarizing bipolar cells.
"In the absence of LRFN2 the cone-mediated photopic electroretinogram b-wave amplitude is reduced at the brightest flash intensities. These data demonstrate that LRFN2 absence compromises normal synaptic transmission between cones and cone DBCs."