Falcon deep-research report: Functional annotation of Nicotiana tabacum PARA / parA / STR246C (UniProt P25317).
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Confirms that UniProt P25317 corresponds to tobacco parA, which is sequence-identical to the defense gene str246C, and maps parA to the auxin-regulated tobacco type-III (tau-class) GST subfamily Nt114 (older nomenclature GST3-1).
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The "auxin-regulated" designation reflects transcriptional induction: the str246C/parA promoter is induced by auxin (2,4-D) via a defined auxin-responsive cis-element, and is independently a multi-stimulus response promoter activated by wounding (within 30 min), elicitors and bacterial infection - supporting the conclusion that parA is a downstream auxin/stress-responsive target gene, not a component of the auxin signal-transduction pathway.
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Direct GST enzymology in the retrieved corpus is demonstrated for the paralogs parB and the Nt103/Nt107 isozymes (GST1-1/GST2-1), not for parA itself; parA-specific catalytic activity is weak, so EC 2.5.1.18 / GST activity for P25317 is best annotated as "probable" on the basis of family placement plus weak directly-detected activity.
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Subcellular localization of parA remains unsettled: a protoplast immunostaining study reported nuclear localization, while BY-2 proteomics detected P25317 in plastid preparations and whole-cell 2-DE; the plastid-fraction detection may reflect contamination, so neither cytoplasm nor nucleus can be asserted with confidence.
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A 2024 synthesis on plant GSTs (Micic et al.) notes that GST substrate promiscuity and the difficulty of detecting endogenous glutathione conjugates mean the physiological substrate of a probable GST such as parA cannot be assigned from sequence similarity alone.
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
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SwissProt keyword-derived (SPKW) annotations present in the Sept 2025 goa_uniprot_gcrp snapshot but removed from the current GOA release after GOA retired the keyword2GO pipeline for cellular organisms.
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The SPKW annotation auxin-activated signaling pathway (GO:0009734) for parA was derived from the UniProt keyword "Auxin signaling pathway", itself based on the historical protein name "Auxin-regulated protein"; it conflates auxin-responsiveness with auxin-pathway-component status and its removal was justified.
TreeGrafter-generated GO annotations
Combined Automated Annotation using Multiple IEA Methods
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Glutathione transferase activity and glutathione metabolic process were inferred from the InterPro tau-class GST signature (IPR045074), the RHEA reaction RHEA:16437, EC 2.5.1.18 and PANTHER family membership.
Isolation of an auxin-regulated gene cDNA expressed during the transition from G0 to S phase in tobacco mesophyll protoplasts.
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parA (par) was isolated as an auxin-regulated cDNA from cultured tobacco mesophyll protoplasts; its 220-aa product had no detectable homology to known proteins at the time of isolation.
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par mRNA accumulates within 30 min of 2,4-D addition and is absent in leaves, freshly prepared protoplasts, or protoplasts without auxin, establishing parA as a rapidly auxin-induced gene.
Location of the cis-acting auxin-responsive region in the promoter of the par gene from tobacco mesophyll protoplasts.
Structural organization of str 246C and str 246N, plant defense-related genes from Nicotiana tabacum.
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The genomic gene str246C is sequence-identical to parA.
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str246C/parA transcripts accumulate in tobacco leaves on inoculation with the bacterial pathogen Pseudomonas (Ralstonia) solanacearum, in both compatible and incompatible interactions, identifying parA as a defense/stress-responsive gene.
parB: an auxin-regulated gene encoding glutathione S-transferase.
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parB (Nt103), a close paralog of parA isolated from the same auxin-induced tobacco protoplast system, has clear sequence homology to glutathione S-transferases (EC 2.5.1.18).
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Recombinant parB expressed in E. coli has GST activity, and GST activity increases in tobacco protoplasts cultured with 2,4-D, directly linking the par GST family to auxin-induced glutathione transferase function.
Expression of the auxin-regulated parA gene in transgenic tobacco and nuclear localization of its gene products.
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The parA recombinant protein has only a low level of GST activity, below 1/30 that of the parB GST.
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Immunofluorescence and confocal microscopy localized parA protein to the nucleus (excluded from the nucleolus) of tobacco protoplasts and BY-2 cells, in contrast to conventional cytoplasmic GSTs such as parB.
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The authors proposed that parA may have a function distinct from a conventional cytosolic GST, possibly related to transcription, although this remains speculative and based on a weak similarity to an E. coli RNA-polymerase-binding protein.
Multiple roles for plant glutathione transferases in xenobiotic detoxification.
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The plant-specific phi (F) and tau (U) GST classes catalyse glutathione-dependent conjugation of xenobiotics, leading to detoxification; plant GSTs use a catalytic serine rather than the tyrosine of mammalian GSTs.
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Endogenous roles of plant GSTs are less well defined and include signaling, counteracting oxidative stress, and transport of secondary metabolites.
Plant glutathione transferases.
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Soluble plant GSTs (EC 2.5.1.18) form a large gene family divided into phi, tau, theta, zeta and lambda classes; tau and phi are plant-specific and the most numerous.
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Plant GSTs are predominantly cytosolic and use glutathione as a cosubstrate or coenzyme for conjugation, peroxide reduction, isomerization and non-catalytic ligandin functions.