Gene Ontology annotation through association of InterPro records with GO terms
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Gene Ontology annotation based on curation of immunofluorescence data
Gene Ontology annotation based on curation of intracellular localizations of expressed fusion proteins in living cells
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
Electronic Gene Ontology annotations created by ARBA machine learning models
Combined Automated Annotation using Multiple IEA Methods
Human orthologs of yeast vacuolar protein sorting proteins Vps26, 29, and 35: assembly into multimeric complexes.
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Human VPS35, VPS29, and VPS26 assemble into a cytosolic and membrane-associated multimeric retromer complex.
"We report the cloning and characterization of human orthologs of three additional components of the complex: Vps26p, Vps29p, and Vps35p. ... Furthermore, hVps35, hVps29, and hVps26 have been found in membrane-associated and cytosolic compartments."
Role of the mammalian retromer in sorting of the cation-independent mannose 6-phosphate receptor.
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Human VPS26, VPS29, and VPS35 localize to tubular domains of early endosomes where CI-MPR is concentrated prior to transport to the TGN.
"In particular, retromer is associated with tubular-vesicular profiles that emanate from early endosomes or from intermediates in the maturation from early to late endosomes."
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RNAi depletion of retromer subunits causes missorting and lysosomal turnover of CI-MPR.
"Depletion of retromer by RNA interference increases the lysosomal turnover of the CI-MPR, decreases cellular levels of lysosomal hydrolases, and causes swelling of lysosomes."
The mammalian retromer regulates transcytosis of the polymeric immunoglobulin receptor.
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VPS35 and VPS26 associate with the polymeric immunoglobulin receptor transcytotic pathway in polarized epithelial cells.
"Here, we show a function for the mammalian Vps35-Vps29-Vps26 retromer subcomplex in promoting pIgR-pIgA transcytosis."
The retromer subunit Vps26 has an arrestin fold and binds Vps35 through its C-terminal domain.
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VPS26 adopts an arrestin-like two-lobed beta-sandwich fold and binds the N-terminus of VPS35.
"The structure of human Vps26A at 2.1-A resolution reveals two curved beta-sandwich domains connected by a polar core and a flexible linker. Vps26 has an unpredicted structural relationship to arrestins. The Vps35-binding site on Vps26 maps to a mobile loop spanning residues 235-246, near the tip of the C-terminal domain."
The vacuolar-ATPase inhibitor bafilomycin and mutant VPS35 inhibit canonical Wnt signaling.
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Disruption of VPS35 impairs canonical Wnt secretion in mammalian cells.
"We show that an N-terminal deletion mutant of VPS35 reduces canonical Wnt signaling in HEK-293 cells expressing exogenous Wnt-1."
Cellular cofactors affecting hepatitis C virus infection and replication.
Functional architecture of the retromer cargo-recognition complex.
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The C-terminal alpha-helical solenoid of VPS35 wraps around the metallophosphoesterase fold of VPS29 to form the rigid scaffold of the retromer cargo-recognition complex.
"Here we report the crystal structure of a VPS29-VPS35 subcomplex showing how the metallophosphoesterase-fold subunit VPS29 (refs 14, 15) acts as a scaffold for the carboxy-terminal half of VPS35. VPS35 forms a horseshoe-shaped, right-handed, alpha-helical solenoid, the concave face of which completely covers the metal-binding site of VPS29, whereas the convex face exposes a series of hydrophobic interhelical grooves."
Integral and associated lysosomal membrane proteins.
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Subcellular fractionation and mass spectrometry detect retromer components associated with endolysosomal membranes.
"In membranes purified from placental lysosomes, we identified 58 proteins, known to reside at least partially in the lysosomal membrane. ... We report on additional 86 proteins that were significantly enriched in the lysosomal membrane fraction."
The retromer complex influences Wnt secretion by recycling wntless from endosomes to the trans-Golgi network.
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Retromer recycles the Wnt sorting receptor Wntless from early endosomes to the trans-Golgi network.
"We propose that retromer influences Wnt secretion by recycling Wntless from endosomes to the trans-Golgi network (TGN)."
Wingless secretion requires endosome-to-Golgi retrieval of Wntless/Evi/Sprinter by the retromer complex.
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Loss of retromer causes lysosomal degradation of Wntless and impairs Wnt secretion.
"Following dissociation from Wingless, Wntless is internalized and returns to the Golgi apparatus in a retromer-dependent manner. Without the retromer-dependent recycling route, Wingless secretion is impaired and, as electron microscopy suggests, Wntless is diverted to a degradative compartment."
Large-scale proteomics and phosphoproteomics of urinary exosomes.
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Proteomic profiling identifies endosomal trafficking proteins in urinary extracellular exosomes.
"Normal human urine contains large numbers of exosomes, which are 40- to 100-nm vesicles that originate as the internal vesicles in multivesicular bodies from every renal epithelial cell type facing the urinary space. Here, we used LC-MS/MS to profile the proteome of human urinary exosomes."
GOLPH3 modulates mTOR signalling and rapamycin sensitivity in cancer.
The retromer coat complex coordinates endosomal sorting and dynein-mediated transport, with carrier recognition by the trans-Golgi network.
Retromer-mediated direct sorting is required for proper endosomal recycling of the mammalian iron transporter DMT1.
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Depletion of VPS35 or VPS26 blocks retrograde recycling of DMT1-II and misroutes it to late endosomes/lysosomes.
"Depletion of the retromer by siRNA against Vps35 leads to mis-sorting of DMT1-II to LAMP2-positive structures, and expression of siRNA-resistant Vps35 can rescue this effect. These findings demonstrate that the retromer recognizes the recycling signal of DMT1-II and ensures its proper endosomal recycling."
The cargo-selective retromer complex is a recruiting hub for protein complexes that regulate endosomal tubule dynamics.
SNX27 mediates retromer tubule entry and endosome-to-plasma membrane trafficking of signalling receptors.
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SNX27 serves as an essential adaptor protein linking beta2-adrenergic receptors to Rab4-positive retromer tubules for endosome-to-plasma-membrane recycling.
"Here we show that sequence-directed sorting occurs at the level of entry into retromer tubules and that retromer tubules are associated with Rab4. Furthermore, we show that sorting nexin 27 (SNX27) serves as an essential adaptor protein linking β2ARs to the retromer tubule."
A SNX3-dependent retromer pathway mediates retrograde transport of the Wnt sorting receptor Wntless and is required for Wnt secretion.
SNX12 role in endosome membrane transport.
Endosomal recruitment of the WASH complex: active sequences and mutations impairing interaction with the retromer.
Regulation of WASH-dependent actin polymerization and protein trafficking by ubiquitination.
A global analysis of SNX27-retromer assembly and cargo specificity reveals a function in glucose and metal ion transport.
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SNX27-retromer mediates direct endosome-to-plasma-membrane recycling of transmembrane cargoes and prevents their late endosome-to-lysosome degradation.
"Furthermore, we establish that direct interaction of the SNX27 PDZ domain with the retromer subunit VPS26 is necessary and sufficient to prevent lysosomal entry of SNX27 cargo."
The regulation and deregulation of Wnt signaling by PARK genes in health and disease.
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VPS35 is the central subunit of the retromer complex that sorts membrane proteins from endosomes to the TGN.
"VPS35 is well described as a key component of the retromer complex, important for the sorting and retrograde transport of membrane-localized proteins from endosomes to the trans-Golgi network"
The Vps35 D620N mutation linked to Parkinson's disease disrupts the cargo sorting function of retromer.
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Expression of the Parkinson disease-linked VPS35 D620N variant redistributes retromer-positive endosomes to an enlarged perinuclear compartment.
"We show that expression of the PD-linked Vps35 D620N mutant redistributes retromer-positive endosomes to a perinuclear subcellular localization and that these endosomes are enlarged in both model cell lines and fibroblasts isolated from a PD patient."
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Disruption of VPS35 retromer sorting impairs CI-MPR-dependent trafficking of the lysosomal protease cathepsin D required for alpha-synuclein degradation.
"While PD-linked point mutant Vps35 D620N interacts with the cation-independent mannose-6-phosphate receptor (CI-M6PR), a known retromer cargo, we find that its expression disrupts the trafficking of cathepsin D, a CI-M6PR ligand and protease responsible for degradation of α-synuclein, a causative agent of PD."
A mechanism for retromer endosomal coat complex assembly with cargo.
Pharmacological chaperones stabilize retromer to limit APP processing.
Retromer binding to FAM21 and the WASH complex is perturbed by the Parkinson disease-linked VPS35(D620N) mutation.
Identification of molecular heterogeneity in SNX27-retromer-mediated endosome-to-plasma-membrane recycling.
A proteome-scale map of the human interactome network.
A massively parallel pipeline to clone DNA variants and examine molecular phenotypes of human disease mutations.
Parkinson's disease genes VPS35 and EIF4G1 interact genetically and converge on α-synuclein.
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VPS35 genetically interacts with EIF4G1 and sortilin to maintain endolysosomal and synaptic proteostasis.
"Here we report an unexpected genetic interaction between two PD genes, VPS35 and EIF4G1. We provide evidence that EIF4G1 upregulation causes defects associated with protein misfolding. Expression of a sortilin protein rescues these defects, downstream of VPS35, suggesting a potential role for sortilins in PD."
Retromer Ensures the Degradation of Autophagic Cargo by Maintaining Lysosome Function in Drosophila.
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Loss of retromer function causes accumulation of undigested cargo and autophagic structures in enlarged lysosomes.
"Here we show that the late stages of autophagy and endocytosis are impaired in Vps26 and Vps35 deficient Drosophila larval fat body cells, but formation of autophagosomes and endosomes is not compromised."
Retromer: Structure, function, and roles in mammalian disease.
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Retromer mediates retrograde transport of transmembrane cargo from endosomes to the Golgi.
"Retrograde transport from the endosome to the Golgi is mediated by a 5 protein complex known as the retromer."
A human interactome in three quantitative dimensions organized by stoichiometries and abundances.
Parkinson's disease-associated mutant VPS35 causes mitochondrial dysfunction by recycling DLP1 complexes.
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VPS35 interacts with DLP1/DRP1 to mediate mitochondria-derived vesicle transport to lysosomes and regulate mitochondrial fission.
"VPS35 mutants showed increased interaction with dynamin-like protein (DLP) 1, which enhanced turnover of the mitochondrial DLP1 complexes via the mitochondria-derived vesicle-dependent trafficking of the complexes to lysosomes for degradation."
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Endogenous VPS35 colocalizes with DLP1 puncta on mitoDsRed2-labelled mitochondria by confocal 3D reconstruction.
"M17 cells transfected with mitoDsRed2 and immunostained with antibodies against DLP1 and VPS35 were imaged and 3D reconstructed images demonstrated the colocalization of DLP1 puncta and VPS35 on mitochondria (Fig. 5a)."
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Perturbation of VPS35 in primary cortical neurons causes loss of dendritic spines and PSD95-positive postsynaptic boutons.
"Loss of dendritic spines and PSD95-positive boutons was apparent in primary neurons expressing WT or mutant VPS35 (Fig. 3e-g)."
Parkinson Disease-linked Vps35 R524W Mutation Impairs the Endosomal Association of Retromer and Induces α-Synuclein Aggregation.
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Retromer is a heterotrimeric complex that associates with endosomal membranes and facilitates retrograde receptor sorting, and the Parkinson disease-associated VPS35 R524W variant impairs endosomal retromer association.
"Retromer is a heterotrimeric complex that associates with endosomal membranes and facilitates the retrograde sorting of multiple receptors, including the cation-independent mannose 6-phosphate receptor for lysosomal enzymes."
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Expression of the Parkinson disease-associated VPS35 R524W loss-of-function variant causes accumulation of intracellular alpha-synuclein aggregates.
"Expression of Vps35 R524W-containing retromer results in the accumulation of intracellular α-synuclein-positive aggregates, a hallmark of Parkinson disease."
VPS35 regulates cell surface recycling and signaling of dopamine receptor D1.
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VPS35 binds the dopamine D1 receptor and promotes its endosomal recycling and signaling.
"These results demonstrate that VPS35 regulates DRD1 trafficking and DRD1-mediated dopamine signaling pathway, and that the PD-associated VPS35 (D620N) mutant loses such functions, providing a novel molecular mechanism underlying PD pathogenesis."
Architecture of the human interactome defines protein communities and disease networks.
Retriever is a multiprotein complex for retromer-independent endosomal cargo recycling.
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VPS29 is shared between the retromer complex (VPS35-VPS26-VPS29) and the retriever complex (VPS35L-VPS26C-VPS29).
"We have called this complex 'retriever'; it is a heterotrimer composed of DSCR3, C16orf62 and VPS29, and bears striking similarity to retromer."
Endosomal Retrieval of Cargo: Retromer Is Not Alone.
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Retromer is an evolutionarily conserved endosomal coat-like complex essential for retrieval and recycling of hundreds of transmembrane proteins.
"Retromer, an ancient multi-protein complex, is essential for the retrieval and recycling of hundreds of transmembrane proteins."
SNX3-retromer requires an evolutionary conserved MON2:DOPEY2:ATP9A complex to mediate Wntless sorting and Wnt secretion.
Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations.
A reference map of the human binary protein interactome.
Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains.
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
OpenCell: Endogenous tagging for the cartography of human cellular organization.
Structure of the endosomal Commander complex linked to Ritscher-Schinzel syndrome.
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Cryo-EM structure of the Commander complex reveals how VPS29 assembles with VPS35L and VPS26C in Retriever.
"It comprises two sub-assemblies: Retriever composed of VPS35L, VPS26C, and VPS29; and the CCC complex which contains twelve subunits: COMMD1-COMMD10 and the coiled-coil domain-containing (CCDC) proteins CCDC22 and CCDC93."
Multimodal cell maps as a foundation for structural and functional genomics.
Retromer recycles WLS to the Golgi
Retromer associates with WLS
WLS dissociates from retromer
UniProtKB record for human VPS35
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VPS35 is the central alpha-helical solenoid scaffold of the retromer cargo-selective complex.
"Acts as a component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway."
Structural Mechanism for Cargo Recognition by the Retromer Complex.
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X-ray crystal structure of the VPS26-VPS35-SNX3-DMT1-II complex identifies the canonical recycling signal binding site at the interface between VPS26 and SNX3 and cooperative interactions across the retromer subunits.
"Here, we present an X-ray crystallographic analysis of a four-component complex comprising the VPS26 and VPS35 subunits of retromer, the sorting nexin SNX3, and a recycling signal from the divalent cation transporter DMT1-II. This analysis identifies a binding site for canonical recycling signals at the interface between VPS26 and SNX3. In addition, the structure highlights a network of cooperative interactions among the VPS subunits, SNX3, and cargo that couple signal-recognition to membrane recruitment."
Structure of the membrane-assembled retromer coat determined by cryo-electron tomography.
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Cryo-electron tomography of the membrane-assembled retromer coat shows that Vps35 homodimers form the legs of arches extending from the membrane-associated sorting nexin array with Vps29 at the apex.
"This reveals a membrane-associated Vps5 array, from which arches of retromer extend away from the membrane surface. Vps35 forms the 'legs' of these arches, and Vps29 resides at the apex where it is free to interact with regulatory factors."