Annotation inferences using phylogenetic trees
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FT/florigen (PEBP family) functions - vegetative-to-reproductive phase transition of meristem, regulation of timing of that transition, regulation of flower development and inflorescence development - are conserved across the FT-like phylogenetic group and were propagated to Hd3a by IBA.
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
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SwissProt keyword-derived (SPKW) annotations present in an earlier keyword2GO snapshot but removed from the current GOA release after GOA retired the keyword2GO pipeline for cellular organisms.
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For HD3A the keywords "Differentiation" and "Flowering"/"Developmental protein" mapped to GO:0030154 (cell differentiation) and GO:0009908 (flower development); both are over-general / mis-targeted for a mobile flowering-time signal and their removal was reasonable (cell differentiation) or warrants replacement with a regulatory term (flower development).
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Electronic Gene Ontology annotations created by ARBA machine learning models
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ARBA models assigned regulation of flower development, inflorescence development, regulation of timing of the vegetative-to-reproductive transition, and photoperiodism (flowering) to Hd3a; these duplicate or parallel the curated IBA/IMP annotations.
A pair of related genes with antagonistic roles in mediating flowering signals.
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Characterizes Arabidopsis FT (the Hd3a ortholog) genetically - FT promotes flowering downstream of CONSTANS and acts antagonistically with TERMINAL FLOWER1 (TFL1); loss of FT delays flowering and FT overexpression causes precocious flowering.
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Does not measure phosphatidylethanolamine binding; the ISS GO:0008429 annotation citing this paper is a PEBP-family-namesake inference, not an experimental MF.
Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions.
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Identified Hd3a as an FT-like gene at a heading-date QTL; introduction of Hd3a caused an early-heading phenotype, Hd3a transcript increased under short days, and Hd3a mRNA is up-regulated by Hd1 under SD - Hd3a promotes heading under the control of Hd1.
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Establishes the conserved function/regulatory relationship of Hd3a/FT with Hd1/CO between rice (SD plant) and Arabidopsis (LD plant).
Genetic dissection of a genomic region for a quantitative trait locus, Hd3, into two loci, Hd3a and Hd3b, controlling heading date in rice.
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Genetically dissected the Hd3 region into two linked heading-date loci, Hd3a and Hd3b; the Kasalath allele at Hd3a promotes heading (flowering) under short-day conditions.
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A flowering-time (heading-date) QTL study; provides no inflorescence-morphogenesis characterization.
Hd3a protein is a mobile flowering signal in rice.
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Demonstrated that the Hd3a protein moves from the leaf to the shoot apical meristem and induces flowering - the key experimental evidence that Hd3a is the rice florigen (a mobile flowering signal).
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Hd3a is expressed (protein level) in leaf-blade vascular tissue, stem and the inner region of the SAM, with circadian expression peaking at dawn under SD - consistent with a leaf-to-SAM long-distance signaling role.
Deep-research report (falcon / Edison Scientific Literature) - functional annotation of rice HD3A (Q93WI9).
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Synthesizes the rice florigen literature, concluding Hd3a is the rice ortholog of Arabidopsis FT and a phloem-mobile florigen - synthesized in leaf vascular tissue, transported through the phloem, unloaded near the SAM, and entering the SAM to trigger the vegetative-to-reproductive transition.
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Describes Hd3a's molecular mode of action as protein-protein interaction - it is not an enzyme or transporter - forming a cytoplasmic Hd3a-14-3-3 (GF14) subcomplex that becomes nuclear upon OsFD1 co-expression to assemble the florigen activation complex (FAC), which activates floral MADS-box genes OsMADS14/OsMADS15. The Hd3a-14-3-3 interaction is essential.
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Documents large flowering-time phenotypes (Hd3a RNAi delays flowering >30 days; Hd3a+RFT1 double suppression prevents flowering up to 300 days) and a steep photoperiod response (Hd3a falls to <1/10 above ~13.5 h day length; a 10-min night break blocks induction); Hd3a acts downstream of Hd1 and Ehd1.