A repeat protein links Rubisco to form the eukaryotic carbon-concentrating organelle.
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The low-CO2-induced protein LCI5 (Cre10.g436550) is an abundant pyrenoid component, renamed EPYC1, at roughly 1:1 stoichiometry with the Rubisco small subunit
"Strikingly, a fourth protein, previously identified as a low-CO 2 –induced nuclear-encoded protein (LCI5; Cre10.g436550) ( 24 ), was found in the low-CO 2 pyrenoid fraction with comparable abundance to Rubisco"
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Fluorescently tagged EPYC1 colocalizes with Rubisco in the pyrenoid
"Venus-tagged EPYC1 showed clear colocalization with mCherry-tagged RBCS in the pyrenoid"
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The epyc1 mutant has a CCM defect and fails to grow photoautotrophically at low CO2; rescue by complementation
"the epyc1 mutant showed defective photoautotrophic growth in low CO 2 , which was rescued by high CO 2 and by reintroducing the EPYC1 gene"
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EPYC1 is required for Rubisco localization to the pyrenoid
"We conclude that EPYC1 is required for Rubisco localization to the pyrenoid not only at low CO 2 , but also at high CO 2 ."
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EPYC1 and Rubisco co-immunoprecipitate
"We conclude that EPYC1 and Rubisco are part of the same supramolecular complex in the pyrenoid."
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EPYC1 is a disordered repeat protein that mediates Rubisco accumulation in the pyrenoid
"Here we find that Rubisco accumulation in the pyrenoid of the model alga Chlamydomonas reinhardtii is mediated by a disordered repeat protein, which we term Essential Pyrenoid Component 1 (EPYC1)."
The Eukaryotic CO(2)-Concentrating Organelle Is Liquid-like and Exhibits Dynamic Reorganization.
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Explicit statement that EPYC1 and LCI5 are the same protein
"a protein called Essential Pyrenoid Component 1 (EPYC1; also known as LCI5) links Rubisco holoenzymes together to form the pyrenoid matrix"
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Part of the EPYC1 pool disperses from the pyrenoid matrix into the stroma during pyrenoid division
"A portion of the RbcS1-Venus and EPYC1-Venus signals rapidly dispersed from the pyrenoid matrix into the stroma for ~20 minutes near the end of chloroplast and pyrenoid division"
The phase separation underlying the pyrenoid-based microalgal Rubisco supercharger.
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Purified EPYC1 and Rubisco are necessary and sufficient for liquid-liquid phase separation in vitro
"Here we use biochemical reconstitution to demonstrate that Rubisco and EPYC1 are the two components necessary and sufficient to bring about a liquid-liquid phase separation (LLPS) that recapitulates the liquid-like behavior reported for the microalgal pyrenoid"
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Rubisco remains catalytically active inside EPYC1-Rubisco droplets
"Rubisco enzyme activity (indicated as 3PG production) is unaffected by droplet formation."
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EPYC1 alone is soluble and does not form a homotypic scaffold at physiological concentrations; condensation is co-dependent on Rubisco
"In contrast to the scaffold hypothesis we find EPYC1 is relatively soluble and only homotypically phase separates at concentrations of 100 µM or more in the presence of a crowding agent."
The structural basis of Rubisco phase separation in the pyrenoid.
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Cryo-EM structures show each EPYC1 Rubisco-binding region binding the two alpha-helices of a Rubisco small subunit via salt bridges and a hydrophobic interface
"Together, our data demonstrate that EPYC1’s Rubisco-binding regions bind to the Rubisco small subunit α-helices via salt-bridge interactions and a hydrophobic interface, enabling the condensation of Rubisco into the phase separated matrix."
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EPYC1 has five Rubisco-binding regions; each holoenzyme has eight EPYC1 sites; interface mutations abolish binding, phase separation and pyrenoid formation
"We find that EPYC1 consists of five evenly spaced Rubisco-binding regions that share sequence similarity. Single-particle cryo-electron microscopy of these regions in complex with Rubisco indicates that each Rubisco holoenzyme has eight binding sites for EPYC1, one on each Rubisco small subunit. Interface mutations disrupt binding, phase separation and pyrenoid formation."
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EPYC1 and Rubisco form a codependent multivalent network
"Cryo-electron tomography supports a model in which EPYC1 and Rubisco form a codependent multivalent network of specific low-affinity bonds, giving the matrix liquid-like properties."
Condensation of Rubisco into a proto-pyrenoid in higher plant chloroplasts.
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EPYC1 expressed in Arabidopsis with a Chlamydomonas-type Rubisco small subunit drives formation of a Rubisco condensate
"Expression of EPYC1 in the Arabidopsis line S2Cr results in condensate formation."
The pyrenoidal linker protein EPYC1 phase separates with hybrid Arabidopsis-Chlamydomonas Rubisco through interactions with the algal Rubisco small subunit.
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Each EPYC1 repeat contributes additively to Rubisco small subunit binding (yeast two-hybrid)
"Addition of the first EPYC1 repeat region was sufficient to detect interaction, and each subsequent repeat region correlated with growth at increased concentrations of 3-AT, indicating that EPYC1 is a modular protein and each repeat has an additive effect on SSU interaction."
Assembly of the algal CO(2)-fixing organelle, the pyrenoid, is guided by a Rubisco-binding motif.
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EPYC1 is an intrinsically disordered protein that phase separates with Rubisco to form the pyrenoid matrix
"EPYC1 is a ~35-kDa intrinsically disordered protein that phase-separates with Rubisco to form the pyrenoid matrix (13, 15, 16)."
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Without EPYC1 the canonical pyrenoid matrix is absent
"First, in a mutant lacking EPYC1, a pyrenoid-like structure still assembles around the tubules, containing some Rubisco enclosed by a starch sheath, although the canonical matrix is absent (13)."
A Spatial Interactome Reveals the Protein Organization of the Algal CO(2)-Concentrating Mechanism.
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EPYC1 is one of the pyrenoid matrix proteins, described as a Rubisco linker
"essential pyrenoid component 1 (EPYC1), a Rubisco linker protein"
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EPYC1 co-purifies with 14-3-3 proteins and a predicted kinase, consistent with phospho-regulation
"EPYC1 interacts with two 14-3-3 proteins FTT1 and FTT2."
Kinase KEY1 controls pyrenoid condensate size throughout the cell cycle by disrupting phase separation interactions.
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KEY1 is the primary kinase of EPYC1 and targets its Rubisco-binding regions
"these results establish that KEY1 is the primary kinase of EPYC1 and suggest that KEY1 preferentially phosphorylates the Rubisco-binding regions of EPYC1"
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EPYC1 phosphorylation by KEY1 disrupts Rubisco-EPYC1 interactions and promotes condensate dissolution
"We show that KEY1 localizes to the condensates and promotes their dissolution by disrupting interactions between their core constituents, the CO2-fixing enzyme Rubisco and its linker protein EPYC1, through EPYC1 phosphorylation."
Phase-separating pyrenoid proteins form complexes in the dilute phase.
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Purified EPYC1 and Rubisco form complexes in the dilute phase, most containing a single Rubisco
"The majority of these complexes contain exactly one Rubisco molecule."
Bottom-up reconstruction of synthetic pyrenoids provides insights into the mechanisms and evolution of carbon concentration by EPYC1 proteins.
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Extant and ancestral EPYC1 sequences condense Rubisco into synthetic pyrenoids whose main effect is an increased carboxylation rate
"In the following, we tested all extant and ancestral sequences with respect to carboxylation rate enhancement and maximum amount of 3-PG produced using the radioisotope assay described above."
Rubisco small-subunit α-helices control pyrenoid formation in Chlamydomonas.
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The two surface-exposed Rubisco small subunit alpha-helices (later shown to be the EPYC1 binding site) are required for pyrenoid formation
"higher plant-like helices knock out the pyrenoid, whereas native algal helices establish a pyrenoid"
Pyrenoids: CO(2)-fixing phase separated liquid organelles.
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Review describing pyrenoids as formed by LLPS of Rubisco with a disordered multivalent Rubisco-binding protein
"Pyrenoids are formed by liquid-liquid phase separation (LLPS) of Rubisco, the primary CO2 fixing enzyme, with an intrinsically disordered multivalent Rubisco-binding protein."
New horizons for building pyrenoid-based CO2-concentrating mechanisms in plants to improve yields.
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Review noting that EPYC1 binds only the Rubisco small subunit through Rubisco-binding motifs
"EPYC1 appears to interact exclusively with the small subunit of Rubisco (SSU) via Rubisco binding motifs (RBMs) that are common to several other pyrenoid components in Chlamydomonas"
Modelling the pyrenoid-based CO(2)-concentrating mechanism provides insights into its operating principles and a roadmap for its engineering into crops.
CO2 limitation induces specific redox-dependent protein phosphorylation in Chlamydomonas reinhardtii.
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LCI5 (EPYC1) is phosphorylated on serine and threonine residues within its tandem repeats
"The phosphorylation sites were mapped in the tandem repeats of Lci5 ensuring phosphorylation of four serine and three threonine residues in the protein."
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LCI5 phosphorylation occurs only at limiting CO2
"Phosphorylation of Lci5 and UEP occurred strictly at limiting CO2; it required reduction of electron carriers in the thylakoid membrane, but was not induced by light."
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Fractionation placed LCI5 on the stromal side of thylakoid membranes
"Immunoblotting with Lci5-specific antibodies revealed that Lci5 was localized in chloroplast and confined to the stromal side of the thylakoid membranes."
Expression analysis of genes associated with the induction of the carbon-concentrating mechanism in Chlamydomonas reinhardtii.
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LCI5 transcript is among the low-CO2-induced CCM-associated genes; function unknown at the time
"Although the function of LCI5 is unknown at present, posttranslational modification of proteins during the acclimation process to LC conditions, which cannot be identified by a DNA array analysis, could be associated with the CCM induction."
Deep Research Report LCI5 (CHLRE)