Affinage mechanistic annotation for AKIP1 (human) Affinage Affinage (Claude Sonnet reading pass + Opus synthesis pass) 19 citations

Affinage mechanistic annotation for AKIP1 (human)

Current model (mechanistic narrative)

AKIP1 (BCA3) is a context-dependent signaling adaptor that converts protein kinase A (PKA) activity into transcriptional and metabolic outputs across NF-κB, Wnt/β-catenin, and mitochondrial pathways [PMID:20562110, PMID:23319652, PMID:30936461]. In its best-characterized role, AKIP1 expression determines whether PKA acts as an NF-κB activator: in cells with high AKIP1, PKA-activating agents enhance p65–PKAc interaction, p65 Ser-276 phosphorylation, and NF-κB-dependent transcription, effects reversed by AKIP1 knockdown PMID:20562110, and AKIP1 likewise drives cAMP/PKA-dependent p65 nuclear translocation in myometrial cells PMID:34166397. Through this NF-κB axis and cooperation with SP1/AP2, AKIP1 transactivates VEGF-C and the CXC chemokines CXCL1/2/8 to drive angiogenesis and tumor growth [PMID:24413079, PMID:29520695], and it transactivates ZEB1 to promote EMT PMID:29218247. In the Wnt pathway AKIP1 binds β-catenin, retains it in the nucleus by blocking the β-catenin–APC interaction, and enhances PKAc-mediated β-catenin phosphorylation to recruit CBP and activate downstream transcription, promoting HCC invasion and metastasis PMID:30936461. AKIP1 also activates AKT signaling, feeding both NF-κB nuclear translocation via mTOR in tumor cells PMID:29133128 and rpS6/eEF2-dependent cardiomyocyte hypertrophy [PMID:24169435, PMID:36899057]. Independently of transcription, AKIP1 localizes to interfibrillary mitochondria, interacts with apoptosis-inducing factor (AIF), enhances electron transport chain coupling, reduces ROS, and protects against oxidant- and ischemia-induced cell death [PMID:23319652, PMID:24236204, PMID:40869079]. Additional partners place AKIP1 at the interface of cytoskeletal and viral processes: it binds GTP-loaded Rac1 to modulate actin-dependent cell spreading PMID:17227220, cooperates with YY1 to transactivate HSP90AA1 and thereby stabilize EGFR PMID:37596322, and is co-opted by Ebola virus VP35 to activate PKA–CREB1 signaling required for viral replication PMID:35474062. AKIP1 protein stability is controlled by a UBE2S/USP15 module that removes K11-linked ubiquitination, augmenting NF-κB output PMID:39098687.

Affinage mechanism profile (Affinage's own GO/Reactome grounding)

Dated findings (citation-anchored)

Year Confidence Finding PMIDs Journal
2010 High AKIP1 acts as a molecular determinant of PKA signaling in NF-κB activation: in cells with high endogenous AKIP1 (MDA-MB231, MCF7), PKA-activating agents enhanced NF-κB-dependent transcriptional activity, the interaction between p65 and PKAc, and phosphorylation of p65 on Ser-276; RNAi knockdown of AKIP1 reversed these effects, showing AKIP1 switches PKA from an NF-κB inhibitor to an activator. PMID:20562110 The Journal of biological chemistry
2007 High AKIP1 (BCA3) is a direct Rac1-interacting protein: it binds specifically to GTP-loaded Rac1 but not GDP-Rac1 in vivo; amino acids 76–125 of BCA3 are required for Rac1 binding; BCA3 and Rac1 co-localize perinuclearly in CSF-1-treated osteoclasts; BCA3 overexpression markedly attenuates CSF-1-induced cell spreading, implicating BCA3 in Rac1-dependent actin remodeling. PMID:17227220 Journal of bone and mineral research
2013 High AKIP1 is preferentially localized to interfibrillary mitochondria in cardiac myocytes and interacts with the mitochondrial protein apoptosis-inducing factor (AIF) under normal and oxidant stress conditions; cardiac gene transfer of AKIP1 increased mitochondrial AKIP1, decreased ROS generation, enhanced calcium tolerance, decreased cytochrome C release, and enhanced phosphorylation of mitochondrial PKA substrates upon ischemic stress. PMID:23319652 Proceedings of the National Academy of Sciences of the United States of America
2013 High AKIP1 overexpression in neonatal cardiomyocytes increases mitochondrial oxygen consumption rate (OCR) and ATP-linked OCR, reduces mitochondrial superoxide production, and enhances electron transport chain coupling efficiency without inducing mitochondrial biogenesis or changes in ETC density; AKIP1 silencing attenuates phenylephrine-stimulated OCR increases. PMID:24236204 PloS one
2013 Medium AKIP1 overexpression in neonatal rat cardiomyocytes stimulates hypertrophic growth (increased cell size, cytoskeletal organization, protein synthesis) specifically through Akt phosphorylation, which activates ribosomal rpS6 and translation elongation factor eEF2; Akt inhibition fully blocks AKIP1-induced hypertrophy. PMID:24169435 International journal of molecular sciences
2014 Medium AKIP1 transcriptionally upregulates VEGF-C by interacting with the VEGF-C promoter in cooperation with transcription factors SP1, AP2, and NF-κB, thereby driving angiogenesis and lymphangiogenesis in esophageal squamous cell carcinoma. PMID:24413079 Oncogene
2019 High AKIP1 binds to β-catenin and retains it in the nucleus by blocking its interaction with APC; AKIP1 also enhances PKAc-mediated phosphorylation of β-catenin, leading to recruitment of CBP and activation of Wnt/β-catenin downstream transcription, promoting HCC invasion and metastasis. PMID:30936461 Oncogene
2017 Medium AKIP1 promotes EMT in non-small-cell lung cancer by directly binding to the ZEB1 promoter and transactivating ZEB1 expression; this binding depends on an interaction between AKIP1 and the transcription factor SP1. PMID:29218247 American journal of cancer research
2018 Medium AKIP1 elevates expression of CXC chemokines CXCL1, CXCL2, and CXCL8 in cervical cancer cells via NF-κB; an IKKβ inhibitor reduces AKIP1-induced chemokine expression, and these chemokines mediate AKIP1-driven angiogenesis (endothelial tube formation via CXCR2) and cancer cell proliferation. PMID:29520695 Molecular and cellular biochemistry
2018 Medium miR-320 directly targets the AKIP1 3′UTR (confirmed by luciferase reporter assay) and suppresses AKIP1 expression; AKIP1 knockdown promotes cardiomyocyte apoptosis and loss of mitochondrial membrane potential upon hypoxia/reoxygenation, mirroring the effect of miR-320 overexpression, placing AKIP1 downstream of miR-320 in the mitochondrial apoptotic pathway. PMID:30181740 Cellular & molecular biology letters
2022 High EBOV VP35 binds AKIP1, which consequently activates PKA and the downstream transcription factor CREB1; CREB1 is recruited into EBOV ribonucleoprotein complexes in viral inclusion bodies and is used for viral replication; AKIP1 depletion or PKA-CREB1 inhibition dramatically impairs EBOV replication. PMID:35474062 Nature communications
2021 Medium AKIP1 mediates cAMP/PKA-driven enhancement of NF-κB (p65) nuclear translocation and COX-2 expression in myometrial cells; AKIP1 knockdown reverses forskolin-induced enhancement of IL-1β-driven COX-2 mRNA and reduces nuclear p65 and c-jun levels. PMID:34166397 PloS one
2017 Medium AKIP1 (BCA3) promotes HCC tumor growth, metastasis, and angiogenesis through AKT activation, which in turn activates mTOR signaling and induces cytoplasm-to-nuclear translocation of NF-κB p65; blockage of AKT with LY294002 impairs these AKIP1-mediated phenotypes. PMID:29133128 Experimental cell research
2023 Medium AKIP1 cooperates with transcription factor YY1 to drive transcriptional activation of HSP90AA1 (HSP90α), which stabilizes EGFR protein; YY1 directly interacts with AKIP1, and HSP90α overexpression rescues EGFR instability caused by AKIP1 depletion. PMID:37596322 Oncogene
2024 Medium UBE2S recruits deubiquitinase USP15 to remove K11-linked ubiquitination from AKIP1, thereby stabilizing AKIP1 protein; increased AKIP1 stability then augments NF-κB transcriptional activity and promotes GBM progression. PMID:39098687 International journal of biological macromolecules
2023 Medium In cardiomyocyte-specific AKIP1 transgenic mice, AKIP1 overexpression promotes exercise-induced cardiomyocyte elongation (physiological hypertrophy) via Akt activation, C/EBPβ downregulation, and CITED4 de-repression, as well as RSK3 reduction, PP2Ac increase, and SRF dephosphorylation; AKIP1 protein clusters were detected in the cardiomyocyte nucleus by electron microscopy. PMID:36899057 Scientific reports
2018 Low AKIP1 is incorporated into HIV-1 particles via its C-terminus, which is the same region that binds the catalytic subunit of PKA (PKAc); because PKAc is known to be packaged into HIV-1 particles, AKIP1 incorporation is likely mediated through its interaction with PKAc. However, incorporated AKIP1 had no detected effect on HIV-1 infectivity. PMID:29677171 Viruses
2014 Low Exon 3 and exon 5 of BCA3 (AKIP1) are required for nuclear localization; a splice variant lacking exon 3 and exon 5 shows altered subcellular localization and reduced NF-κB-dependent reporter activity compared to full-length BCA3, suggesting these exons encode a nuclear localization signal and an NF-κB regulatory domain. PMID:25526186 Genetics and molecular research
2025 Medium AKIP1 overexpression in porcine cells reduces apoptosis (caspase-3/7 activity), suppresses MPTP-mediated necrosis, decreases lipid peroxidation (ferroptosis marker), lowers mitochondrial superoxide production, and enhances mitochondrial respiration and recovery following H2O2-induced oxidative challenge. PMID:40869079 International journal of molecular sciences

Citations