Gene Ontology annotation through association of InterPro records with GO terms

Electronic Gene Ontology annotations created by transferring manual GO annotations between related proteins based on shared sequence features

GO_REF:0000120

Combined Automated Annotation using Multiple IEA Methods

file:PSEPK/lysA/lysA-uniprot.txt

UniProtKB entry for PSEPK LysA-II

Assigns Q88CF4 to EC 4.1.1.20, the LysA-specific family, and the terminal conversion of meso-diaminopimelate to L-lysine.

"Full=Diaminopimelate decarboxylase"

file:PSEPK/lysA/lysA-goa.tsv

QuickGO annotation snapshot for PSEPK LysA-II

file:PSEPK/lysA/lysA-deep-research-asta.md

Asta retrieval report for PSEPK LysA-II

Retrieval completed but returned no target-specific functional evidence; it is retained for provenance and is not used to support curation claims.

file:PSEPK/lysA/lysA-deep-research-openscientist.md

OpenScientist literature and database synthesis for PSEPK LysA-II

Corroborates Q88CF4/PP_5227 as the PLP-dependent EC 4.1.1.20 enzyme for the terminal decarboxylation in L-lysine biosynthesis.

"The core functional assignment is that Q88CF4 is a **DAPDC (EC 4.1.1.20)** catalyzing:"
No direct Q88CF4 characterization was found, so target-specific kinetics, regulation, structure, essentiality, and relative flux versus Q88L58 remain unverified.

"No direct experimental characterization of the Q88CF4 protein."
Adjacency to dapF is retained as genomic context, but the report's claim that LysA-II is the physiologically dominant or dedicated copy is not adopted without target-strain expression, genetics, or flux evidence.