Gene Ontology annotation through association of InterPro records with GO terms
Annotation inferences using phylogenetic trees
Arhgap36-dependent activation of Gli transcription factors.
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Arhgap36 was identified in a genome-scale cDNA overexpression screen as a positive regulator of the Hedgehog pathway that acts independently of Smoothened, inhibiting Gli repressor formation and promoting activation of full-length Gli proteins.
"Arhgap36 acts in a Smoothened (Smo)-independent manner to inhibit Gli repressor formation and to promote the activation of full-length Gli proteins."
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The paper that discovered this gene's Hedgehog function names the residue that replaced the arginine finger and concludes that catalytic GAP function may not be required for its Gli-activating activity.
"The replacement of this structural element with a threonine (T246) suggests that catalytic GAP domain function may not be required for Arhgap36-induced Gli activation."
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Two further residues structurally equivalent to those required for Rho GAP function in Graf were mutated without loss of Gli activation.
"we mutated two other Arhgap36 residues, K283 and R287, which are structurally equivalent to those necessary for Rho GAP function in Graf"
Bimodal antagonism of PKA signalling by ARHGAP36.
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ARHGAP36 binds the PKA catalytic subunit directly through an N-terminal pseudosubstrate motif, mapped to a 25-residue sequence requiring R153 and R154, which docks into the acidic active-site cleft of PKAC.
"These experiments demonstrate the direct interaction between ARHGAP36 and PKAC, mediated by a pseudosubstrate motif on ARHGAP36."
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Inhibition of PKAC catalysis was measured on purified components, with a PKI peptide as the positive control in the same assay.
"First, we performed an in vitro kinase assay with recombinant PKAC. Addition of 36i peptide strongly reduced the fraction of phosphorylated PKA substrate (Fig. 3a)."
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The authors' own summary of the inhibition experiments, stated in terms of the PKI comparison.
"The above experiments collectively demonstrate that ARHGAP36 is a pseudosubstrate inhibitor of PKAC with potency comparable to PKI."
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ARHGAP36 expressed alone concentrates at the plasma membrane, while PKAC is otherwise largely cytosolic and is recruited onto vesicles on coexpression.
"ARHGAP36 expressed alone was concentrated at the plasma membrane, while PKAC appeared largely cytosolic."
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The constructs are explicitly the human protein, isoform 2, which is what makes the localisation and inhibition results assignable to Q6ZRI8-2 rather than to an ortholog.
"The full-length sequence refers to human ARHGAP36 UniProt ID: Q6ZRI8-2."
Structure-activity mapping of ARHGAP36 reveals regulatory roles for its GAP homology and C-terminal domains.
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ARHGAP36 lacks the arginine finger conserved in catalytically active RhoGAP homologs and has no effect on the activities of Rac1, Cdc42 or RhoA; residues structurally equivalent to those associated with GTP hydrolysis are not required for its Gli-activating function.
"However, the GAP-like region in ARHGAP36 lacks the “arginine finger” motif conserved in catalytically active homologs [7, 24], and ARHGAP36 has no effect on the activities of Rac1, Cdc42, and Rho A [25]. In addition, ARHGAP36 residues that are structurally equivalent to those previously associated with GTP hydrolysis are not required for ARHGAP36-mediated Gli activation [7]."
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The residue occupying the arginine-finger position is named explicitly, in the numbering of human isoform 2.
"the site that is structurally equivalent to the arginine finger (Thr227) is shown in blue."
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The GAP-like domain is retained as a protein interaction module rather than a catalytic one, which is the resolution reached for other non-catalytic RhoGAP-domain proteins.
"other Rho GAPs lacking the catalytic arginine finger have been found to mediate non-catalytic protein-protein interactions"
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Isoform 1, the UniProt canonical sequence, behaves differently from the other four: it is perinuclear and does not activate Gli, whereas the others reach the plasma membrane and do.
"isoform 1 adopts a perinuclear distribution and does not affect Gli function, while the other four variants localize to the plasma membrane and can activate Gli transcription factors"
Patched1-ArhGAP36-PKA-Inversin axis determines the ciliary translocation of Smoothened for Sonic Hedgehog pathway activation.
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Patched1 interacts with and stabilises ArhGAP36 at the centrosome, and activating the Shh pathway removes ArhGAP36 from the mother centriole, allowing centrosomal PKA to accumulate.
"We find that Patched1 interacts with and stabilizes the PKA negative regulator ArhGAP36 to the centrosome. Activating the Shh pathway results in the removal of ArhGAP36 from the mother centriole and the centrosomal PKA accumulation."
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Knockdown of ArhGAP36 raises PKAc and phosphorylated Inversin, establishing the sign of the endogenous relationship by loss of function rather than by overexpression.
"we knocked down ArhGAP36 in WT cells and found that ArhGAP36 knockdown significantly increased the protein level of PKAc and pInvs"
Critical roles of ARHGAP36 as a signal transduction mediator of Shh pathway in lateral motor columnar specification.
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ARHGAP36 is a direct target of the motor-neuron Isl1-Lhx3 complex, and it promotes Gli-dependent transactivation partly by inhibiting PKA activity.
"Arhgap36 is a direct target gene of Isl1-Lhx3 complex during MN generation. The action of ARHGAP36 is to promote Gli-dependent transactivation partly through inhibition of PKA activity."
Systems analysis of RhoGEF and RhoGAP regulatory proteins reveals spatially organized RAC1 signalling from integrin adhesions.
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In this paper's own Supplementary Table 2, under the RhoGEF/RhoGAP activity screen columns, ARHGAP36 scores negative for RhoA, negative for Rac1 and negative for Cdc42, while ARHGAP35 (RhoA+, Rac1+) and ARHGAP1 (RhoA+, Cdc42+) score positive in the same run.
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Supplementary Table 1 records the screened construct as human isoform 2, 517 aa, and gives the authors' own domain classification for ARHGAP36 verbatim as "GAP-like (arginine finger missing)".
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The screen contains known false-negative examples, but the all-negative fraction is not itself a false-negative rate: 15 of its 65 scorable GAP rows are negative for all three GTPases, and ARHGAP17/RICH1, a characterised Cdc42 GAP, is among them. Four of the six arginine-finger-less PROSITE-RhoGAP proteins present in the screen are all-negative, ARHGAP36 included, against that 23 percent base rate.
Deciphering the Molecular and Functional Basis of RHOGAP Family Proteins: A SYSTEMATIC APPROACH TOWARD SELECTIVE INACTIVATION OF RHO FAMILY PROTEINS.
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A systematic survey of the human RHOGAP family found that 9 of the 66 RHOGAP-domain proteins do not have a catalytic domain capable of terminating RHO protein signalling.
"Using database searches, we extracted 66 distinct human RHOGAPs, from which 57 have a common catalytic domain capable of terminating RHO protein signaling by stimulating the slow intrinsic GTP hydrolysis (GTPase) reaction."
Germline intergenic duplications at Xq26.1 underlie Bazex-Dupré-Christol basal cell carcinoma susceptibility syndrome.
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Noncoding intergenic duplications at Xq26.1 dysregulate ARHGAP36, and ARHGAP36 protein is elevated in telogen hair follicles, basal cell carcinomas and trichoepitheliomas from affected individuals.
"found increased ARHGAP36 levels in hair follicles in telogen, in BCCs and in trichoepitheliomas from patients with BDCS."
Molecular and genetic characterization of sex-linked orange coat color in the domestic cat.
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An independent group restates the resolution of the GAP question, that ARHGAP36 acts as a PKA inhibitor rather than on Rho GTPases, and supplies an in vivo readout of PKAC depletion in melanocytes.
"Arhgap36 functioned not as a Rho GTPase inhibitor but as an inhibitor of PKA signaling by directly binding the catalytic subunit of PKA (PKAC) and targeting it for lysosomal degradation."
Mechanistic insights into transcriptional regulation of ARHGAP36 expression identify a factor predictive of neuroblastoma survival.
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FOXC1 directly induces ARHGAP36, and ARHGAP36 in turn depletes PKA and its catalytic subunit, activating Hedgehog signalling and making it less dependent on Smoothened.
"Arhgap36 depletes the levels of PKA and its catalytic subunit PKAC, both strongly activating Hh signaling and making signal transduction less dependent on regulation via Smoothened."
ARHGAP36 imposes a bifurcate activation of adherens junction and actomyosin to promote entosis.
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ARHGAP36 promotes entotic cell-in-cell formation by binding beta-catenin through its N-terminal arginine-rich domain and, mutually exclusively, interacting with PKAc to activate RhoA signalling and actomyosin contraction.
"Mechanistically, ARHGAP36, through the arginine-rich domain at the N-terminal, binds to β-catenin to stabilize P-cadherin expression in a way accompanying with, and mutually exclusive from, its interaction with PKAc to activate RhoA signaling."
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Accessible primary Fig.8A and supplementary S6-S8 show an actin-associated ARHGAP36 pool and altered polarized F-actin/pMLC2 distribution after target knockdown in MDA-MB-436-10 cells. These contextual data support the inherited actin process and location independently of GAP catalysis.
Enhancer hijacking at the ARHGAP36 locus is associated with connective tissue to bone transformation.
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The authors summarise ARHGAP36 as a RhoGAP signal transduction protein that activates the non-canonical Hedgehog pathway and antagonises PKA signalling, and report that its overexpression drives osteoblast differentiation through that pathway.
"ARHGAP36 encodes a RhoGAP signal transduction protein25 that activates the non-canonical hedgehog (HH) pathway26 and works as a potent antagonist of the protein kinase A (PKA) signaling (Eccles et al., 2016)."
ARHGAP36: the arginine finger UniProt annotates, and the residue that is there
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UniProt annotates an arginine-finger Site at position 258 of ARHGAP36 by PROSITE ProRule (ECO:0000255) and asserts GTPase activator activity by similarity (ECO:0000250); the residue at 258 is a threonine.
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Three controls carrying their own annotated arginine finger all project onto position 258 and each recovers every other control's finger, so the Site is in register; the nearest arginine is 7 residues away.
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Mouse Arhgap36 carries the same substitution at its own annotated Site 246, and the human and mouse sites project onto each other reciprocally, so the loss predates the rodent-primate split and lies well below the Eumetazoan node the IBD is placed at.
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The GTPase-contacting surface from PDB 1TX4 projects onto ARHGAP36 at 8 of 25 identical positions against 9 of 25 for mouse Arhgap6, so the binding surface is about as conserved as the catalysing family member's while the catalytic residue is not.
Affinage mechanistic annotation for ARHGAP36 (human)
ARHGAP36 primary figure, screen and PAINT evidence recheck
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Primary images and supplementary legends support contextual actin association and spatial organization; source-level provenance and catalytic-screen limitations are recorded.
"S8A compares control and ARHGAP36-knockdown MDA-MB-436-10 cells, with altered polarized F-actin and pMLC2 distribution."