Gene Ontology annotation through association of InterPro records with GO terms
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
Electronic Gene Ontology annotations created by ARBA machine learning models
Combined Automated Annotation using Multiple IEA Methods
Deep research summary for VEGFA from Perplexity
Falcon deep research report on VEGFA
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VEGF-A is a secreted dimeric growth factor whose primary physiological role is to
activate endothelial cells to support vasculogenesis/angiogenesis and to regulate
vascular permeability, signaling primarily through VEGFR1 (FLT1) and VEGFR2 (KDR/FLK1),
with VEGFR2 functioning as the main pro-angiogenic signaling receptor.
"**VEGF-A** is a **secreted dimeric growth factor** whose primary physiological role is to **activate endothelial cells** to support **vasculogenesis/angiogenesis** (development and remodeling of blood vessels) and to regulate vascular permeability. Mechanistically, VEGF-A ligands signal mainly through receptor tyrosine kinases **VEGFR1 (FLT1)** and **VEGFR2 (KDR/FLK1)**, with VEGFR2 functioning as the main pro-angiogenic signaling receptor."
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VEGFA isoform diversity is generated by alternative splicing, extracellular
proteolysis, and non-canonical translation, producing forms with different
diffusion vs ECM/HSPG retention properties and distinct biological outputs.
"A key concept in VEGFA functional annotation is that it is not a single molecular species: **alternative splicing, extracellular processing, and even non-canonical translation** generate **forms with different diffusion/ECM retention properties and potentially different biological outputs**."
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VEGF121 is freely diffusible; VEGF165 is approximately half diffusible and half
HSPG-bound; longer isoforms VEGF189/206 are largely ECM-sequestered via heparin
binding regions. This determines spatial signaling gradients.
"- **VEGF121** is described as **freely diffusible**. (perezgutierrez2023biologyandtherapeutic pages 5-6)
- **VEGF165** is **partly diffusible and partly HSPG-bound**, and ~half of secreted VEGF165 is diffusible while the remainder is HSPG-bound."
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VEGF-A binds VEGFR1 and VEGFR2 and the co-receptors neuropilin-1 (NRP1) and
neuropilin-2 (NRP2); ligand binding triggers receptor dimerization and
transphosphorylation.
"**Receptors/co-receptors:** VEGF-A binds VEGF receptors **VEGFR1 and VEGFR2** and co-receptors **neuropilin-1 (NRP1) and neuropilin-2 (NRP2)**. Ligand binding triggers receptor **dimerization and transphosphorylation**."
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VEGFR2 activation engages PLCgamma-PKC-ERK1/2 (proliferation/migration),
PI3K-AKT (survival; permeability), and FAK signaling (ECM adhesion;
permeability).
"**VEGFR2 (KDR/FLK1) signaling outputs:** VEGFR2 activation engages multiple canonical pathways:
- **PLCγ → PKC → ERK1/2**, associated with endothelial proliferation, migration, and broader endothelial homeostasis programs (including pro-angiogenic responses). (perezgutierrez2023biologyandtherapeutic pages 5-6)
- **PI3K → AKT**, supporting survival and contributing to permeability regulation. (perezgutierrez2023biologyandtherapeutic pages 5-6)
- **FAK signaling**, linked to ECM adhesion and vascular permeability."
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VEGFR1 (FLT1) can act as a decoy receptor limiting the amount of VEGF-A
available to activate VEGFR2, with weaker downstream activation.
"**VEGFR1 (FLT1) as regulator/decoy:** VEGFR1 can act as a **decoy receptor** limiting the amount of VEGF-A available to activate VEGFR2 in physiological contexts, and is generally characterized by weaker downstream activation (for example limited PLCγ–PKC–MAPK activation)."
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VEGFA is a canonical hypoxia-inducible gene regulated by HIF1alpha/HIF2alpha
binding to a conserved hypoxia response element; HIF stabilization (e.g. VHL
loss) can drive VEGFA upregulation even in normoxia.
"**Hypoxia-dependent transcription:** VEGFA is a canonical hypoxia-inducible gene regulated by **HIF1α/HIF2α** binding to a conserved hypoxia response element, and constitutive HIF stabilization (e.g., via loss of VHL function) can drive VEGFA upregulation even in normoxia."
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Authoritative review (Perez-Gutierrez & Ferrara 2023) argues that proposed
anti-angiogenic VEGFxxxb splice variants such as VEGF165b are better described
as weak agonists than as antagonists, and their endogenous role remains
debated. This refines the framing that VEGF165b is a definitive
anti-angiogenic ligand.
"So-called **VEGFxxxb** transcripts (e.g., **VEGF165b**) have been discussed as anti-angiogenic competitors, but an authoritative 2023 review emphasizes that such variants are better regarded as **weak agonists rather than antagonists**, and their endogenous existence/importance remains debated."
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Under hypoxia, a long VEGF-A isoform (L-VEGF) can be translated from a
non-canonical upstream CUG start codon. L-VEGF can be proteolytically cleaved
upstream of the canonical VEGF-A start to produce both secreted VEGF-A and an
N-terminal fragment N-VEGF that can translocate to the nucleus.
"Under hypoxia, a **long VEGF-A isoform (“L-VEGF”)** can be translated from a **non-canonical upstream CUG start codon**, adding an N-terminal extension. L-VEGF can then be proteolytically cleaved upstream of the canonical VEGF-A start to produce two products: **(i) secreted VEGF-A**, and **(ii) an N-terminal fragment “N-VEGF” that can translocate to the nucleus**."
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N-VEGF is retained intracellularly and can translocate to the nucleus; forced
nuclear localization is sufficient to induce a hypoxia-like transcriptional
program (Hif1alpha, VEGF-A isoforms) even in normoxia, and genetic deletion
changes the hypoxia-responsive transcriptome and increases hypoxia-associated
apoptosis.
"- **N-VEGF** is **retained intracellularly** and can **translocate to the nucleus**. (katsman2022nvegftheautoregulatory pages 1-3)
Primary experimental evidence shows that forcing N-VEGF into the nucleus (e.g., via NLS fusion) is sufficient to induce transcriptional programs including **Hif1α** and **VEGF-A isoforms** under normoxia, and that **genetic deletion** of N-VEGF changes a substantial fraction of the hypoxia-responsive transcriptome and increases susceptibility to hypoxia-associated apoptosis."
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VEGF-A-VEGFR2 signaling integrates endothelial proliferation/migration
(PLCgamma-PKC-ERK), survival (PI3K-AKT), and adhesion/permeability (FAK),
explaining its role in both developmental angiogenesis and pathological
neovascularization and edema.
"VEGF-A–VEGFR2 signaling integrates multiple endothelial functions, including **proliferation/migration** (PLCγ–PKC–ERK), **survival** (PI3K–AKT), and **adhesion/permeability** (FAK-related signaling), providing a mechanistic explanation for why VEGFA is both a developmental angiogenesis factor and a mediator of pathological neovascularization and edema."
Role of alphavbeta3 integrin in the activation of vascular endothelial growth factor receptor-2.
VEGF prevents apoptosis of human microvascular endothelial cells via opposing effects on MAPK/ERK and SAPK/JNK signaling.
Characterization of the VEGF binding site on the Flt-1 receptor.
The effects of angiogenic growth factors on extravillous trophoblast invasion and motility.
Solution structure of the VEGF-binding domain of Flt-1: comparison of its free and bound states.
Placenta growth factor and vascular endothelial growth factor B and C expression in microvascular endothelial cells and pericytes. Implication in autocrine and paracrine regulation of angiogenesis.
Vascular endothelial growth factor induces cyclooxygenase-dependent proliferation of endothelial cells via the VEGF-2 receptor.
Vascular endothelial growth factor (VEGF) upregulates BCL-2 and inhibits apoptosis in human and murine mammary adenocarcinoma cells.
Direct identification of a major autophosphorylation site on vascular endothelial growth factor receptor Flt-1 that mediates phosphatidylinositol 3'-kinase binding.
The cystine knot promotes folding and not thermodynamic stability in vascular endothelial growth factor.
Expression and localization of tenomodulin, a transmembrane type chondromodulin-I-related angiogenesis inhibitor, in mouse eyes.
Vascular endothelial growth factor is a chemoattractant for trophoblast cells.
The fms-like tyrosine kinase, a receptor for vascular endothelial growth factor.
Identification of the KDR tyrosine kinase as a receptor for vascular endothelial cell growth factor.
pH regulates vascular endothelial growth factor binding to fibronectin: a mechanism for control of extracellular matrix storage and release.
Heparin affin regulatory peptide binds to vascular endothelial growth factor (VEGF) and inhibits VEGF-induced angiogenesis.
Vasculogenesis and angiogenesis.
VEGF: once regarded as a specific angiogenic factor, now implicated in neuroprotection.
Thrombospondin-1 inhibits endothelial cell responses to nitric oxide in a cGMP-dependent manner.
Minimal active domain and mechanism of action of the angiogenesis inhibitor histidine-rich glycoprotein.
Hypoxic conditions stimulate the production of angiogenin and vascular endothelial growth factor by human renal proximal tubular epithelial cells in culture.
Glycosaminoglycan modification of neuropilin-1 modulates VEGFR2 signaling.
Expression and functions of the vascular endothelial growth factors and their receptors in human basophils.
Blocking neuropilin-1 function has an additive effect with anti-VEGF to inhibit tumor growth.
Association of ATP1A1 and dear single-nucleotide polymorphism haplotypes with essential hypertension: sex-specific and haplotype-specific effects.
Vascular endothelial growth factor can signal through platelet-derived growth factor receptors.
The zinc-finger transcription factor, early growth response 3, mediates VEGF-induced angiogenesis.
Developmental coronary maturation is disturbed by aberrant cardiac vascular endothelial growth factor expression and Notch signalling.
Aquaporin 1 is required for hypoxia-inducible angiogenesis in human retinal vascular endothelial cells.
Vascular endothelial growth factor induces heat shock protein (HSP) 27 serine 82 phosphorylation and endothelial tubulogenesis via protein kinase D and independent of p38 kinase.
The effects of growth factors on the proliferation and in vitro angiogenesis of human macular inner choroidal endothelial cells.
AIP1 functions as an endogenous inhibitor of VEGFR2-mediated signaling and inflammatory angiogenesis in mice.
Angiopoietin-1 reduces vascular endothelial growth factor-induced brain endothelial permeability via upregulation of ZO-2.
Response gene to complement 32, a novel hypoxia-regulated angiogenic inhibitor.
Critical role for GATA3 in mediating Tie2 expression and function in large vessel endothelial cells.
Src-induced tyrosine phosphorylation of VE-cadherin is not sufficient to decrease barrier function of endothelial monolayers.
Lipid phosphate phosphatase 3 stabilization of beta-catenin induces endothelial cell migration and formation of branching point structures.
Characterization of the biological effects of a novel protein kinase D inhibitor in endothelial cells.
Erk5 activation elicits a vasoprotective endothelial phenotype via induction of Kruppel-like factor 4 (KLF4).
Gremlin is a novel agonist of the major proangiogenic receptor VEGFR2.
Monocytic cells derived from human embryonic stem cells and fetal liver share common differentiation pathways and homeostatic functions.
Neuropilin-1 signaling through p130Cas tyrosine phosphorylation is essential for growth factor-dependent migration of glioma and endothelial cells.
VEGF binding to NRP1 is essential for VEGF stimulation of endothelial cell migration, complex formation between NRP1 and VEGFR2, and signaling via FAK Tyr407 phosphorylation.
Glioblastoma-derived leptin induces tube formation and growth of endothelial cells: comparison with VEGF effects.
MULTIMERIN2 impairs tumor angiogenesis and growth by interfering with VEGF-A/VEGFR2 pathway.
miR-16 inhibits the proliferation and angiogenesis-regulating potential of mesenchymal stem cells in severe pre-eclampsia.
Endorepellin laminin-like globular 1/2 domains bind Ig3-5 of vascular endothelial growth factor (VEGF) receptor 2 and block pro-angiogenic signaling by VEGFA in endothelial cells.
Early VEGFR2 activation in response to flow is VEGF-dependent and mediated by MMP activity.
MicroRNA-15b contributes to ginsenoside-Rg1-induced angiogenesis through increased expression of VEGFR-2.
MicroRNA 329 suppresses angiogenesis by targeting CD146.
Hypoxia-responsive microRNA-101 promotes angiogenesis via heme oxygenase-1/vascular endothelial growth factor axis by targeting cullin 3.
Dysregulated miR-361-5p/VEGF axis in the plasma and endothelial progenitor cells of patients with coronary artery disease.
Development of a highly-potent anti-angiogenic VEGF8-109 heterodimer by directed blocking of its VEGFR-2 binding site.
MicroRNA-377 regulates mesenchymal stem cell-induced angiogenesis in ischemic hearts by targeting VEGF.
EMMPRIN/CD147 is a novel coreceptor of VEGFR-2 mediating its activation by VEGF.
p75(NTR)-dependent activation of NF-κB regulates microRNA-503 transcription and pericyte-endothelial crosstalk in diabetes after limb ischaemia.
High concentrations of uric acid inhibit angiogenesis via regulation of the Krüppel-like factor 2-vascular endothelial growth factor-A axis by miR-92a.
VE-cadherin facilitates BMP-induced endothelial cell permeability and signaling.
Autocrine effect of vascular endothelial growth factor-A is essential for mitochondrial function in brown adipocytes.
MicroRNA-30b controls endothelial cell capillary morphogenesis through regulation of transforming growth factor beta 2.
Overexpression of miR‑21 is involved in acute monocytic leukemia‑associated angiogenesis by targeting IL‑12.
PI3Kδ as a Novel Therapeutic Target in Pathological Angiogenesis.
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
Different signal transduction properties of KDR and Flt1, two receptors for vascular endothelial growth factor.
Vasoactive peptides modulate vascular endothelial cell growth factor production and endothelial cell proliferation and invasion.
Crystal structure at 1.7 A resolution of VEGF in complex with domain 2 of the Flt-1 receptor.
VEGF-A,C,D bind to VEGFR2 leading to receptor dimerization
VEGFA,B,PLGF bind to VEGFR1 leading to receptor dimerization
Homodimerization of VEGF proteins
PTK2 binds p-S-SHB and is recruited to p-6Y-VEGFR2
p-6Y-VEGFR2 binds SHC-transforming protein 2
VEGFR2 autophosphorylates
SRC1-1 binds SH2D2A and is recruited to VEGFR2
PLCG1 disassociates from VEGFR2 and translocate to PM
Exocytosis of platelet alpha granule contents
SRC-1 phosphorylates p-Y397-PTK2
HSP90AA1 binds p-6Y-VEGFR2
p38 MAPK activation by VEGFR
PTK2 and SRC-1 phosphorylate PXN on Y31 and Y118
Integrin alphaVbeta3 binds p-6Y-VEGFR2
VEGFA dimer:p-6Y-VEGFR2 dimer:PI3K phosphorylates PIP2 to PIP3
Src kinases phosphorylate VAV
CRK binds BCAR1 and or PXN
Active ROCK1,ROCK2 phosphorylates p-5Y-PTK2 on S732
SRC-1 phosphorylates PTK2-beta
PTK2beta binds alphaVbeta3
DOCK180:ELMO exchanges GTP for GDP, activating RAC1
p-Y402-PTK2B phosphorylates p-5Y,S732-PTK2 on Y407
p-Y420-FYN is phosphorylated on S21
AXL autophosphorylates on Y779 and Y821
Expression of STAT3-upregulated extracellular proteins
VEGFA gene expression is inhibited by the TFAP2A homodimer
VEGFA-165 dimer binds VEGFA inhibitors
VEGFA-165 dimer binds VEGFR2 dimer