Gene Ontology annotation through association of InterPro records with GO terms
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniPathway vocabulary mapping
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Combined Automated Annotation using Multiple IEA Methods
Purification and properties of the membrane-bound CDP-diglyceride synthetase from Escherichia coli.
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The enzyme was purified to about 90 percent homogeneity from an overproducing strain, its amino-acid composition matching the product of the cloned cds gene, and it required a different detergent at each purification step.
"has been purified to 90% homogeneity from Escherichia coli cells"
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Purified enzyme shows surface-dilution kinetics in Triton X-100 and a sequential rather than ping-pong mechanism, with kinetic constants reported.
"The pure enzyme displays surface dilution kinetics when assayed in the presence of Triton X-100."
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The hydrophobic, detergent-dependent behaviour of the protein through every purification step is consistent with an integral membrane protein.
"The purification required the use of different detergents at each step, illustrating the refractory hydrophobic nature of this protein."
Partial purification and properties of CTP:phosphatidic acid cytidylyltransferase from membranes of Escherichia coli.
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The activity was solubilised from the cell envelope with digitonin and purified about 70-fold, establishing a membrane location biochemically.
"was solubilized from the cell envelope by a differential extraction procedure involving the detergent digitonin"
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One enzyme makes both CDP-diglyceride and dCDP-diglyceride, CTP and dCTP being competitive substrates, so the single GO term covers both products.
"It therefore appears that a single enzyme catalyzes synthesis of both CDP-diglyceride and dCDP-diglyceride in E. coli."
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The enzyme also catalyses the reverse pyrophosphorolysis in vitro; UniProt records the physiological direction as phosphatidic acid to CDP-diacylglycerol, so this is not a second function.
"The enzyme also catalyzes a pyrophosphorolysis of CDP-diglyceride"
Massive accumulation of phosphatidic acid in conditionally lethal CDP-diglyceride synthetase mutants and cytidine auxotrophs of Escherichia coli.
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Conditionally lethal cds mutants accumulate phosphatidic acid to about 30 percent of membrane lipid above pH 8 while phosphatidylethanolamine and phosphatidylglycerol synthesis is inhibited more than ten-fold, and the liponucleotide pool falls to about a seventh of wild type.
"Above pH 8, GN80 accumulates phosphatidic acid to about 30% of the total membrane lipid, while the de novo syntheses of phosphatidylethanolamine and phosphatidylglycerol are abruptly inhibited by over 10-fold."
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The authors conclude that CDP-diglyceride is an obligatory precursor of more than 90 percent of the two major E. coli phospholipids, which is the in vivo basis for treating this reaction as the committed step.
"Our results constitute definitive physiological proof that CDP-diglyceride is an obligatory precursor for over 90% of the phosphatidylethanolamine and phosphatidylglycerol in E. coli."
Global topology analysis of the Escherichia coli inner membrane proteome.
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C-terminal alkaline phosphatase and GFP tagging fixed the periplasmic or cytoplasmic location of the C-terminus for 601 inner membrane proteins, and those constraints were used to derive topology models.
"we established the periplasmic or cytoplasmic locations of the C termini for 601 inner membrane proteins"
CdsA is involved in biosynthesis of glycolipid MPIase essential for membrane protein integration in vivo.
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Depleting CdsA leaves MPIase undetectable and blocks M13 procoat processing, while overproducing CdsA raises MPIase about three-fold.
"We found that MPIase was hardly detected in both the cdsA and cdsA/ynbB knockouts"
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Inverted vesicles from CdsA overproducers and partially purified CdsA8 convert labelled phosphatidic acid, CTP and GlcNAc-1-phosphate into the first MPIase intermediate, identified against a synthetic reference by chromatography and mass spectrometry, with CDP-diacylglycerol apparently not released from the enzyme.
"These observations strongly suggest that CDP-DAG is synthesized and then converted to compound I on CdsA."
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cdsA is essential; neither the knockout nor the cdsA ynbB double knockout grows without induction of the complementing plasmid.
"both the cdsA knockout and the cdsA/ynbB double knockout were unable to grow in the absence of inducer arabinose"
YnbB is a CdsA paralogue dedicated to biosynthesis of glycolipid MPIase involved in membrane protein integration.
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Under CdsA depletion, YnbB overproduction restores MPIase but not phospholipid synthesis, and chimera analysis attributes the fast CDP-diacylglycerol synthesis needed for growth to the N-terminal half of CdsA.
"Under CdsA-depleted conditions, YnbB overproduction restored MPIase expression, but not phospholipid biosynthesis."
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The authors read YnbB as a backup dedicated to the MPIase branch, which leaves the division of labour between the two paralogues in the wild type unresolved.
"the role of YnbB seems to be as a backup for MPIase biosynthesis"
Increased expression of the bacterial glycolipid MPIase is required for efficient protein translocation across membranes in cold conditions.
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MPIase rises in the cold and the rise depends on cdsA or ynbB, which the authors describe as rate-limiting enzymes for MPIase biosynthesis.
"either the cdsA or ynbB gene, both encoding rate-limiting enzymes for MPIase biosynthesis, is responsible for the increase in the MPIase expression"
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MPIase is the glycolipid that drives membrane protein integration into the E. coli cytoplasmic membrane, which is the entity that acts on the substrate protein, not CdsA.
"Membrane protein integrase (MPIase) is a glycolipid that drives membrane protein integration into the cytoplasmic membrane in Escherichia coli"
Molecular cloning and sequencing of the gene for CDP-diglyceride synthetase of Escherichia coli.
UniProtKB entry P0ABG1 (CDSA_ECOLI)
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Curated catalytic activity with Rhea 16229 and the physiological direction, pathway position, inner membrane location, essentiality and MPIase involvement, each tied to the primary literature by ECO:0000269.
"PhysiologicalDirection=left-to-right"
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The entry places the enzyme at the final step of CDP-diacylglycerol biosynthesis from sn-glycerol 3-phosphate.
"diacylglycerol from sn-glycerol 3-phosphate: step 3/3."
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The gene cannot be deleted, and depletion causes a phospholipid-synthesis defect together with MPIase loss and accumulation of membrane and secretory protein precursors.
"Essential, cannot be deleted (PubMed:30718729)."
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Family placement is supported by independent signature resources, the CDS family note, the NCBIfam model for cdsA, Pfam CTP_transf_1 and PROSITE PS01315.
"DR Pfam; PF01148; CTP_transf_1; 1."
Cached PANTHER family entry list for PTHR46382 (phosphatidate cytidylyltransferase)
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P0ABG1 is listed as a member of PTHR46382 and of its single subfamily SF1, alongside bacterial orthologues from B. subtilis, Aquifex and Chlamydia, which confirms the family placement the IBA rows depend on without relying on the GOA row itself.
"P0ABG1,Phosphatidate cytidylyltransferase,protein,83333,Escherichia coli (strain K12),Escherichia coli (strain K12),cdsA,285,PTHR46382:SF1,PHOSPHATIDATE CYTIDYLYLTRANSFERASE,True"