Gene Ontology annotation through association of InterPro records with GO terms
Electronic Gene Ontology annotations created by transferring manual GO annotations between related proteins based on shared sequence features
Electronic Gene Ontology annotations created by ARBA machine learning models
TreeGrafter-generated GO annotations
Combined Automated Annotation using Multiple IEA Methods
A single bacterial genus maintains root growth in a complex microbiome.
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Demonstrated that Variovorax manipulates plant hormone levels (auxin and ethylene) to balance the effects of the root microbiome on root growth.
"We demonstrate that Variovorax manipulates plant hormone levels to balance the effects of our ecologically realistic synthetic root community on root growth."
UniProtKB record for Q6J256 (1A1D_VARPD)
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Swiss-Prot reviewed entry curated under HAMAP rule MF_00807 as a homotrimeric PLP-dependent 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) that converts ACC to ammonia and alpha-ketobutyrate.
"CC -!- FUNCTION: Catalyzes a cyclopropane ring-opening reaction, the
CC irreversible conversion of 1-aminocyclopropane-1-carboxylate (ACC) to
CC ammonia and alpha-ketobutyrate. Allows growth on ACC as a nitrogen
CC source. {ECO:0000255|HAMAP-Rule:MF_00807}."
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Contains a covalent N6-(pyridoxal phosphate)lysine active-site modification at Lys51 and active-site nucleophile at Ser78.
"FT MOD_RES 51
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00807""