Gene Ontology annotation through association of InterPro records with GO terms
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Gene Ontology annotation based on curation of immunofluorescence data
Electronic Gene Ontology annotations created by transferring manual GO annotations between related proteins based on shared sequence features
Automatic assignment of GO terms using logical inference, based on on inter-ontology links
Combined Automated Annotation using Multiple IEA Methods
Exome sequencing identifies mitochondrial alanyl-tRNA synthetase mutations in infantile mitochondrial cardiomyopathy.
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The foundational human genetics study identified AARS2 as encoding the mitochondrial alanyl-tRNA synthetase.
"Rigorous data analysis allowed us to identify a homozygous missense mutation in AARS2, which we showed to encode the mitochondrial alanyl-tRNA synthetase (mtAlaRS)."
A reference map of the human binary protein interactome.
Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context.
Editing activity for eliminating mischarged tRNAs is essential in mammalian mitochondria.
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Recombinant mature human AARS2 misactivates serine sufficiently to require proofreading.
"HmtAlaRS misactivated Ser with a discriminator factor of 1/569 (Table 1), which is significantly larger than 1/3300, the proposed threshold for frequency of errors in protein synthesis (31), suggesting that mtAlaRS requires editing function to prevent Ala-to-Ser misincorporation in mitochondria."
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Human AARS2 directly performs post-transfer editing of Ser-tRNAAla; editing-domain substitutions impair this activity while largely preserving charging.
"In vitro aminoacylation assay indicated that the mutants C749A and V760E displayed only slightly decreased tRNAAla charging activity compared with wild type mtAlaRS (Figure 1D). Determination of post-transfer editing of mischarged Ser-tRNAAla showed that the C749A mutant was severely defective in editing while the initial velocity of the post-transfer editing activity of the V760E mutant was only slightly reduced (Figure 1E and F)."
Overexpression of human mitochondrial alanyl-tRNA synthetase suppresses biochemical defects of the mt-tRNA(Ala) mutation in cybrids.
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AARS2 overexpression increases charging of mutant human mt-tRNAAla and improves mitochondrial translation.
"In this study, AARS2 overexpression did not result in a detectable increase of the mutated mt-tRNAAla but caused an increase incharged mt-tRNAAla in mutant cybrids, leading to enhanced mitochondrial translation. This strongly suggested that AARS2 improved the aminoacylation activity rather than preventing the degradation of mt-tRNAAla 5655A>G."
Instability of the mitochondrial alanyl-tRNA synthetase underlies fatal infantile-onset cardiomyopathy.
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The cardiomyopathy-associated p.Arg580Trp variant primarily destabilizes AARS2 rather than abolishing its charging or editing chemistry.
"Taken together, our data suggest that the p.Arg580Trp variant impacts on stability of mt-AlaRS protein but not aminoacylation or editing activities and that the β-barrel subdomain has a critical role in protein folding and stability."
The G3-U70-independent tRNA recognition by human mitochondrial alanyl-tRNA synthetase.
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Human mitochondrial AARS2 is monomeric and recognizes mt-tRNAAla without the canonical G3-U70 identity pair.
"In the present study, we found that hmtAlaRS is a monomer and recognizes mitochondrial tRNAAla in a G3-U70-independent manner, requiring several elements in the acceptor stem."
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Human AARS2 misactivates glycine and has strong tRNA-independent pre-transfer editing against glycine.
"In addition, we found that hmtAlaRS misactivates noncognate Gly and catalyzes strong transfer RNA (tRNA)-independent pre-transfer editing for Gly."
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Human AARS2 also performs post-transfer editing of Gly-tRNAAla.
"However, it synthesized more mischarged Gly-tRNAAla than did the wild-type hmtAlaRS, comparable with our previously constructed editing-defective C749A (42) (Figure 5D and E), supporting its defect in editing. Indeed, the result of the post-transfer editing assay showed that hmtAlaRS-R663E was unable to hydrolyze Gly-tRNAAla (Figure 5F)."
Relaxed sequence constraints favor mutational freedom in idiosyncratic metazoan mitochondrial tRNAs.
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Purified human mitochondrial AARS2 selectively charges cognate mt-tRNAAla.
"Hs mt AlaRS charges cognate mt tRNAAla but not mt tRNAs specific for Asp, Leu, or Ser."
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The AARS2 C-Ala domain helps fold and recognize the structurally flexible human mitochondrial tRNAAla elbow.
"The appended C-Ala domain, which plays an auxiliary role in prokaryotic AlaRSs and is dispensable for aminoacylation in the human cytoplasmic AlaRS system43,44, plays a central role as a folding aid for the intrinsically flexible mt tRNA elbow. Fine-tuned induced-fit adaptation selects mt tRNAAla and rejects non-cognate mt tRNAs (Supplementary Fig. 7g)."
Hypoxia induces mitochondrial protein lactylation to limit oxidative phosphorylation.
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Recombinant AARS2 directly catalyzes ATP- and lactate-dependent lactylation of PDHA1 and CPT2 substrate peptides.
"AARS2 lactylated the synthetic K336-containing PDHA1 peptide as well as the K457/8-containing CPT2 peptide (Fig. 5b; Supplementary information, Fig. S6b) via lactate- and ATP-dependent and pyrophosphate-inhibitable mechanisms."
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AARS2-dependent PDHA1 and CPT2 lactylation was observed under high-lactate conditions.
"Treatment with 10 mM Me-Lac increased the Lac-K336 and Lac-K457/8 levels of ectopically expressed PDHA1 (Fig. 5d) and CPT2 (Fig. 5e) in C2C12 and HL-1 cells (Supplementary information, Fig. S6g). However, the lactylation was not observed when Aars2 was knocked out (Fig. 5d, e)."
AARS1 and AARS2 sense L-lactate to regulate cGAS as global lysine lactyltransferases.
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AARS1 and AARS2 bind L-lactate and directly catalyze ATP-dependent lysine lactylation.
"Here we identify the alanyl-tRNA synthetases AARS1 and AARS2 (AARS1/2) as intracellular L-lactate sensors required for L-lactate to stimulate the lysine lactylome in cells. AARS1/2 and the evolutionarily conserved Escherichia coli orthologue AlaRS bind to L-lactate with micromolar affinity and they directly catalyse L-lactate for ATP-dependent lactylation on the lysine acceptor end."
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Under elevated L-lactate, AARS2 associates with and lactylates cGAS, inhibiting cGAS.
"In response to L-lactate, AARS2 associates with cyclic GMP-AMP synthase (cGAS) and mediates its lactylation and inactivation in cells and in mice."
Class I histone deacetylases catalyze lysine lactylation.
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AARS1 or AARS2 depletion does not reduce global basal lysine lactylation in the untreated proliferating HEK293T model.
"To compare the relative contribution of AARS enzymes towards global basal levels of Kla in cells, we used siRNA to knockdown AARS1 and AARS2. However, the knockdown of either enzyme did not alter Kla levels (Fig. S6, B–E), suggesting the AARS pathway is also not required for global lysine lactylation."
AARS2-catalyzed lactylation induces follicle development and premature ovarian insufficiency.
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AARS2-dependent PDHA1/CPT2 lactylation occurs in a human granulosa-cell model, and the POI-associated R199C variant has increased activity.
"AARS2 deletion abrogated PDHA1 K336 and CPT2 K457/8 lactylation in the human granulosa cell line COV343 [38], and R199C exhibited a higher ability to lactylate PDHA1 K336 and CPT2 K457/8 in AARS2−/− COV343 cells (Fig. 3A, B)."
Novel (ovario) leukodystrophy related to AARS2 mutations.
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Selected leukodystrophy-associated AARS2 variants were functionally assessed through a recombinant yeast model.
"The pathogenicity of the 2 AARS2 variants of P1 was proven in a recombinant yeast model."
PCBP1 regulates alternative splicing of AARS2 in congenital cardiomyopathy.
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PCBP1-binding motifs and human PCBP1 are required for inclusion of AARS2 exon 16 in human cell-based minigene assays.
"We found that mutations of either PCBP1 site 1 or site 2, or canonical splice donor or acceptor sites, are sufficient to cause exclusion of AARS2 exon-16 (Fig. 1l,m). Knockdown of human PCBP1 in both systems shows a similar pattern of AARS2 exon-16 exclusion (Fig. 1l,m and Extended Data Fig. 1c)."
alanine + tRNA(Ala) + ATP => Ala-tRNA(Ala) + AMP + pyrophosphate
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Reactome represents AARS2-catalyzed mitochondrial alanine-tRNA charging.
"AARS2 (mitochondrial alanyl tRNA synthetase) catalyzes the reaction of alanine, mitochondrial tRNA(Ala), and ATP to form Ala-tRNA(Ala), AMP, and pyrophosphate."
UniProtKB/Swiss-Prot record for human AARS2 (Q5JTZ9)
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UniProt records alanine charging and editing of incorrectly charged tRNAAla as AARS2's canonical functions.
"CC -!- FUNCTION: Catalyzes the attachment of alanine to tRNA(Ala) in a two-
CC step reaction: alanine is first activated by ATP to form Ala-AMP and
CC then transferred to the acceptor end of tRNA(Ala). Also edits
CC incorrectly charged tRNA(Ala) via its editing domain (PubMed:21549344)."
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UniProt locates the reviewed AARS2 product in mitochondria.
"CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000255|HAMAP-Rule:MF_03133,
CC ECO:0000269|PubMed:21549344}."
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UniProt flags the unresolved compartmental access underlying AARS2-mediated cGAS lactylation.
"CC -!- CAUTION: Given that AARS2 is a mitochondrial protein, it is unclear how
CC it can mediate lactylation of CGAS, which localizes in the cytosol and
CC nucleus. {ECO:0000269|PubMed:39322678}."