Gene Ontology annotation through association of InterPro records with GO terms

Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt

GO_REF:0000117

Electronic Gene Ontology annotations created by ARBA machine learning models

GO_REF:0000118

TreeGrafter-generated GO annotations

GO_REF:0000120

Combined Automated Annotation using Multiple IEA Methods

file:PSEPK/fabB/fabB-uniprot.txt

UniProtKB entry Q88FC3 for Pseudomonas putida KT2440 fabB

UniProt records the FabB condensation of cis-3-decenoyl-ACP with malonyl-ACP.

"Reaction=(3Z)-decenoyl-[ACP] + malonyl-[ACP] + H(+) = 3-oxo-(5Z)-"
UniProt places FabB in fatty-acid biosynthesis.

"PATHWAY: Lipid metabolism; fatty acid biosynthesis."

file:PSEPK/fabB/fabB-deep-research-openscientist.md

OpenScientist deep research for PSEPK fabB

The report supports the conserved FabB elongation chemistry.

"it elongates an ACP-bound acyl chain by two carbons per cycle."

PMID:34181948

A cryptic long-chain 3-ketoacyl-ACP synthase in the Pseudomonas putida F1 unsaturated fatty acid synthesis pathway.

Purified P. putida F1 FabB elongates cis-3-decenoyl-ACP in vitro, providing close-strain comparative support for the KT2440 assignment.

"PpFabB and PpFabF2 both produce the same products as E. coli FabB"