Deep research report on rpoN (Q72BK7) sigma-54 in Desulfovibrio vulgaris
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D. vulgaris sigma-54 regulome includes 36 regulons, 201 protein-coding genes, 87 promoters
"The reconstructed D. vulgaris sigma54 sigmulon includes 36 regulons covering 201 protein-coding genes and 4 non-coding RNAs, associated with 87 sigma54-dependent promoters upstream of 85 operons"
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Sigma-54 promoter consensus is tGGcacg (-24) and tTGCt (-12)
"derived -24/-12 elements are tGGcacg (-24) and tTGCt (-12)"
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D. vulgaris encodes 37 sigma-54-associated EBPs
"D. vulgaris encodes 37 sigma54-associated EBPs; 25 harbor the canonical GAFTGA sigma54-interaction motif"
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Regulated processes include flagella, nitrogen metabolism, biofilm, type III secretion
"Enriched functions include flagellar assembly and cell-exterior structures"
Gene Ontology annotation through association of InterPro records with GO terms
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
Automatic assignment of GO terms using logical inference, based on inter-ontology links
Combined Automated Annotation using Multiple IEA Methods