Gene Ontology annotation through association of InterPro records with GO terms

Gene Ontology annotation based on UniPathway vocabulary mapping

Electronic Gene Ontology annotations created by transferring manual GO annotations between related proteins based on shared sequence features

GO_REF:0000117

Electronic Gene Ontology annotations created by ARBA machine learning models

GO_REF:0000118

TreeGrafter-generated GO annotations

GO_REF:0000120

Combined Automated Annotation using Multiple IEA Methods

file:PSEPK/hldE/hldE-uniprot.txt

UniProtKB reviewed entry for hldE (Q88D93)

The record defines two HldE reactions with EC, Rhea, HAMAP, domain, and pathway assignments.

file:PSEPK/hldE/hldE-goa.tsv

QuickGO GOA annotations for hldE

The fetched GOA table contains the eleven annotations reviewed here and PTN005327360 support for both exact activities.

file:interpro/panther/PTHR46969/PTHR46969-metadata.yaml

PANTHER family metadata for bifunctional HldE

file:projects/P_PUTIDA/deep-research/PSEPK__adp-heptose-biosynthesis__ppu00541-deep-research-openscientist.md

OpenScientist PSEPK ADP-heptose biosynthesis synthesis

The report distinguishes the four covered ADP-D,D-heptose reactions from the unresolved terminal epimerization step.

file:modules/adp_heptose_biosynthesis.yaml

ADP-heptose precursor biosynthesis module