Affinage mechanistic annotation for ARFGEF2 (human) Affinage Affinage (Claude Sonnet reading pass + Opus synthesis pass) 24 citations

Affinage mechanistic annotation for ARFGEF2 (human)

Current model (mechanistic narrative)

ARFGEF2 (BIG2) is a brefeldin A-sensitive guanine nucleotide exchange factor that activates class I ARFs (ARF1 and ARF3) to drive membrane trafficking at the trans-Golgi network (TGN) and recycling endosomes, and through this activity it controls cargo delivery, organelle integrity, and several downstream signaling outputs [PMID:14647276, PMID:15385626]. By activating ARFs at the TGN, BIG2 recruits the clathrin adaptors AP-1 and GGA — but not the COPI coat — placing it specifically in the TGN-to-endosome arm of membrane traffic, and it acts redundantly with its homolog BIG1 in AP-1-dependent retrograde transport while retaining a non-redundant role in maintaining recycling endosome integrity [PMID:11777925, PMID:12051703, PMID:18417613, PMID:20360857]. Its catalytic activity is required for recycling of cargoes including the transferrin receptor and integrin beta1, and for release of TNFR1 exosome-like vesicles, and BIG2 transports E-cadherin, beta-catenin, and Filamin A from the Golgi to the cell surface [PMID:14647276, PMID:15385626, PMID:16477018, PMID:16320251, PMID:17276987, PMID:22908276]. BIG2 is recruited to the TGN by the small G protein Arl1 acting downstream of a GBF1→ARF4/ARF5 cascade, and it homodimerizes through an intramolecular DCB/HUS interaction [PMID:22291037, PMID:23386609, PMID:17640864]. Beyond catalysis, BIG2 functions as an A-kinase-anchoring protein (AKAP) with three N-terminal domains that bind PKA regulatory subunits; PKA phosphorylation lowers its GEF activity and is reversed by PP1gamma, and this AKAP/cAMP module — also engaging PDE3A — couples BIG2 to TNFR1 vesicle release and beta-catenin S675 phosphorylation and transcriptional coactivation [PMID:12571360, PMID:17360629, PMID:18625701, PMID:19332778, PMID:27162341]. BIG2 additionally scaffolds a myosin phosphatase complex (myosin IIA, PP1delta, MYPT1) independently of its GEF activity to control myosin light-chain phosphorylation, F-actin content, and cell migration, and drives a BIG2-ARF1-RhoA-mDia1 axis governing dendritic Golgi polarization in neurons [PMID:23918382, PMID:29455446]. BIG2 is also required for VEGF expression and angiogenesis PMID:31199673.

Affinage mechanism profile (Affinage's own GO/Reactome grounding)

Dated findings (citation-anchored)

Year Confidence Finding PMIDs Journal
2003 High ARFGEF2/BIG2 is required for vesicle and membrane trafficking from the trans-Golgi network (TGN); inhibition by brefeldin A or dominant-negative ARFGEF2 cDNA decreases neural progenitor cell proliferation in vitro and disrupts intracellular localization of E-cadherin and beta-catenin by preventing their transport from the Golgi apparatus to the cell surface. PMID:14647276 Nature genetics
2002 Medium BIG2 overexpression blocks BFA-induced redistribution of ARF1 and the AP-1 complex from TGN membranes but not the COPI complex, indicating BIG2 specifically regulates membrane association of AP-1 (but not COPI) through ARF activation at the TGN. PMID:11777925 The Journal of biological chemistry
2002 Medium A dominant-negative BIG2 mutant induces redistribution of AP-1 and GGA1 coat proteins and membrane tubulation of the TGN, but does not affect COPI redistribution or Golgi tubulation, placing BIG2 specifically in the TGN-to-endosome trafficking pathway via AP-1 and GGA regulation. PMID:12051703 Biochemical and biophysical research communications
2004 High BIG2 localizes to both the TGN and recycling endosomes; expression of a catalytically inactive BIG2 mutant (E738K) selectively induces membrane tubules from the recycling endosome compartment. BIG2 has exchange activity toward class I ARFs (ARF1 and ARF3) in vivo, and inactivation of either ARF exaggerates tubulation induced by BIG2(E738K), indicating BIG2 maintains recycling endosome integrity via class I ARF activation. PMID:15385626 Molecular biology of the cell
2003 High BIG2 contains three A kinase-anchoring protein (AKAP) domains in its N-terminal region: domain A (residues 27–48) interacts with RI-alpha and RI-beta; domain B (284–301) interacts with RII-alpha and RII-beta; domain C (517–538) interacts with RI-alpha, RII-alpha, and RII-beta. BIG2 physically interacts with the PKA regulatory subunit RI-alpha, confirmed by coimmunoprecipitation of in vitro translated proteins and endogenous proteins. Elevation of cAMP (8-Br-cAMP or forskolin) induces translocation of BIG2 from cytosol to Golgi and other membranes. PMID:12571360 Proceedings of the National Academy of Sciences of the United States of America
2005 Medium BIG2 physically interacts with exocyst protein Exo70 via its N-terminal region (amino acids 1–643); both BIG2 and Exo70 co-localize at trans-Golgi network membranes and at the microtubule-organizing center (MTOC)/centrosomes in HepG2 cells, suggesting functional association in vesicular trafficking from TGN to plasma membrane. PMID:15705715 Proceedings of the National Academy of Sciences of the United States of America
2006 High BIG2 localizes specifically (not BIG1) to recycling endosome structures during transferrin uptake and transferrin receptor (TfnR) recycling in COS7 cells. BIG2 siRNA knockdown causes perinuclear accumulation of TfnR and significantly slows transferrin release, demonstrating a functional role for BIG2 in TfnR recycling. BIG2 interacts with Exo70 in recycling endosome fractions. PMID:16477018 Proceedings of the National Academy of Sciences of the United States of America
2006 Medium BIG2 (but not BIG1) is required for trafficking of Filamin A (FLNA) from the Golgi apparatus to the cell membrane in neuroblastoma cells; transfection of dominant-negative ARFGEF2 partially blocks FLNA transport. BIG2 and FLNA are co-expressed in neural progenitors along the neuroependyma. PMID:16320251 The Journal of comparative neurology
2007 High BIG2 (not BIG1) regulates constitutive release of TNFR1 exosome-like vesicles from human vascular endothelial cells via an ARF1- and ARF3-dependent mechanism. BIG2 co-localizes with TNFR1 in cytoplasmic vesicles, and this association is disrupted by BFA. ARF1 and ARF3 act nonredundantly and additively in TNFR1 exosome-like vesicle release. PMID:17276987 The Journal of biological chemistry
2007 High PKA phosphorylates BIG2 in vitro, decreasing its GEP activity; this phosphorylation is reversed by protein phosphatase 1gamma (PP1gamma) but not PP1alpha or PP1beta. Endogenous PP1gamma (not PP1alpha or PP1beta) co-immunoprecipitates with BIG2 from microsomal fractions, establishing PP1gamma as a regulator of BIG2 activity. PMID:17360629 Proceedings of the National Academy of Sciences of the United States of America
2006 Medium AMY-1 (associate of Myc-1) co-immunoprecipitates with both BIG2 and BIG1 in vitro, but localizes to the TGN specifically through interaction with BIG2 (not BIG1) as demonstrated by RNAi: depletion of BIG2 (not BIG1) disperses AMY-1 from the TGN. PMID:16866877 Genes to cells : devoted to molecular & cellular mechanisms
2007 Medium BIG2 (and BIG1) form homodimers through interactions between their conserved DCB domains; within each homodimer, the DCB domain also interacts with the HUS domain. The HUS box is the most conserved motif in large ArfGEFs after the Sec7 domain and mediates the DCB/HUS interaction. PMID:17640864 The Journal of biological chemistry
2008 Medium Simultaneous knockdown of both BIG2 and BIG1 causes mislocalization of TGN/recycling endosome-associated proteins and blocks retrograde transport of furin from late endosomes to the TGN, a phenotype similar to depletion of AP-1, establishing BIG2 and BIG1 as redundant regulators of AP-1-dependent trafficking between TGN and endosomes. PMID:18417613 Molecular biology of the cell
2008 Medium cAMP-induced release of TNFR1 exosome-like vesicles requires PKA activity and is mediated through BIG2's AKAP function: PKA regulatory subunit RIIbeta binds specifically to BIG2 AKAP domains B and C, and this interaction is required for both constitutive and cAMP-induced TNFR1 exosome-like vesicle release. PMID:18625701 The Journal of biological chemistry
2009 Medium Phosphodiesterase 3A (PDE3A) physically associates with BIG2 (and BIG1) complexes; specific depletion of PDE3A by siRNA or its inhibition by cilostamide significantly decreases membrane-associated BIG2 and BIG1 and reduces activated ARF1-GTP, linking PDE3A-dependent cAMP regulation within BIG2 AKAP complexes to ARF1 activation. PMID:19332778 Proceedings of the National Academy of Sciences of the United States of America
2010 Medium Depletion of BIG2 (but not BIG1) by siRNA induces tubulation of the recycling endosomal compartment, while BIG1 depletion causes Golgi fragmentation into mini-stacks; this demonstrates non-redundant and distinct functions for BIG2 (recycling endosome integrity) vs. BIG1 (Golgi morphology). PMID:20360857 PloS one
2012 High The small G protein Arl1 is necessary and sufficient for Golgi recruitment of BIG2 (and BIG1) but not GBF1. Arl1 binds directly to the N-terminal region of Sec71 (the Drosophila ortholog of BIG1/BIG2), establishing Arl1 as the upstream recruiter that directs BIG2 specifically to the trans-Golgi. PMID:22291037 The Journal of cell biology
2012 Medium BIG2 siRNA depletion causes perinuclear accumulation of integrin beta1 and delayed return to the cell surface, decreased cell motility, and reduced actin-based membrane protrusions; cytosolic levels of Arp2, Arp3, cofilin-1, phosphocofilin, vinculin, and Grb2 are increased, establishing BIG2 as a regulator of integrin beta1 recycling and actin dynamics in cell migration. PMID:22908276 Proceedings of the National Academy of Sciences of the United States of America
2013 Medium GBF1-activated ARFs (ARF4 and ARF5, but not ARF3) facilitate BIG2 and BIG1 recruitment to the TGN, establishing a functional GEF cascade: GBF1 (pre-Golgi/Golgi/TGN) → ARF4/ARF5 activation → BIG1/BIG2 TGN recruitment → ARF activation for AP-1/GGA clathrin adaptor recruitment. PMID:23386609 The Journal of biological chemistry
2013 High BIG2 physically associates (reciprocal Co-IP) with nonmuscle myosin IIA in HeLa cells independently of its ARF-GEF activity; depletion of BIG2 (or BIG1) enhances phosphorylation of myosin regulatory light chain (T18/S19) and increases F-actin content, impairing cell migration. BIG2 anchors a myosin phosphatase complex containing myosin IIA, protein phosphatase 1delta, and myosin phosphatase-targeting subunit 1 (MYPT1). PMID:23918382 Proceedings of the National Academy of Sciences of the United States of America
2016 Medium BIG2 (and BIG1) physically interact with beta-catenin; depletion of BIG1/BIG2 or expression of GEF-inactive mutants causes perinuclear Golgi accumulation of beta-catenin and reduces PKA-phosphorylated beta-catenin (S675). BIG2 AKAP-C sequence is required for PKA-dependent S675 phosphorylation and beta-catenin transcription coactivator function, requiring both ARF-GEF activity and phospholipase D-dependent vesicular trafficking. PMID:27162341 Proceedings of the National Academy of Sciences of the United States of America
2018 Medium BIG2 co-localizes with the Golgi apparatus in hippocampal neurons and is required for Golgi deployment into major dendrites. BIG2 acts through ARF1 to activate RhoA and its downstream effector mDia1, forming a BIG2-ARF1-RhoA-mDia1 signaling axis that regulates dendritic Golgi polarization and dendrite growth/maintenance. In vivo, ARFGEF2 shRNA delivered by in utero electroporation impairs Golgi deployment into the apical dendrite. PMID:29455446 Molecular neurobiology
2019 Medium BIG2 (and BIG1) knockdown significantly decreases VEGF mRNA and protein levels in glioblastoma U251 cells and HUVECs, and inhibits HUVEC angiogenesis by diminishing cell migration. Knockdown of the BIG2 homolog arfgef2 in zebrafish impairs angioblast migration and intersegmental vessel sprouting, and CRISPR/Cas9 deletion of arfgef2 causes vascular development defects, establishing a role for BIG2 in VEGF expression and angiogenesis beyond vesicular trafficking. PMID:31199673 FASEB journal
2025 Medium In Drosophila neuroblasts, Arf1 and its GEF ARFGEF2/Sec71 control asymmetric division by facilitating cortical localization of nonmuscle myosin II regulatory light chain (Sqh). Arf1 physically associates with Sqh and with Vibrator (a type I PITP), and Arf1/Sec71 facilitate PI(4)P localization to the neuroblast cortex, linking PI(4)P production to myosin II cortical anchoring during asymmetric division. PMID:40208939 Proceedings of the National Academy of Sciences of the United States of America

Citations