Gene Ontology annotation through association of InterPro records with GO terms.
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara.
Gene Ontology annotation of human sequence-specific DNA binding transcription factors (DbTFs) based on the TFClass database
Combined Automated Annotation using Multiple IEA Methods.
T helper cell fate specified by kinase-mediated interaction of T-bet with GATA-3.
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T-bet represses Th2 lineage commitment through tyrosine kinase-mediated physical interaction with GATA3 that interferes with GATA3's DNA binding activity
"T-bet represses Th2 lineage commitment through tyrosine kinase-mediated interaction between the two transcription factors that interferes with the binding of GATA-3 to its target DNA."
Interaction of GATA-3/T-bet transcription factors regulates expression of sialyl Lewis X homing receptors on Th1/Th2 lymphocytes.
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GATA3 represses FUT7 transcription through phosphorylation-dependent recruitment of HDAC-3 and HDAC-5
"GATA-3 regulates FUT7 transcription by phosphorylation-dependently recruiting histone deacetylase (HDAC)-3/HDAC-5 and by competing with CBP/P300 in binding to the N terminus of T-bet."
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GATA3 and T-bet form a transcription factor complex that regulates lymphocyte homing receptor expression through competitive binding to the FUT7 promoter
"T-bet interferes with the binding of GATA-3 to its target DNA, and also that GATA-3 significantly interferes with the binding of T-bet to the FUT7 promoter."
The human enhancer-binding protein Gata3 binds to several T-cell receptor regulatory elements.
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GATA3 binds specifically to enhancer elements of at least three TCR genes containing the WGATAR consensus sequence
"The in vitro transcribed and translated Gata3 cDNA product bound specifically to the enhancer elements of at least three TCR genes containing the above consensus sequence."
Abundant expression of Kallikrein 1 gene in human keratinocytes was mediated by GATA3.
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GATA3 is a key transcriptional regulator of KLK1 expression in human keratinocytes through binding to GATA motifs in the KLK1 promoter
"GATA3 was found to bind the site located at -954/-855 and to be a key regulator of abundant KLK1 expression in human keratinocyte."
Critical role for GATA3 in mediating Tie2 expression and function in large vessel endothelial cells.
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GATA3 directly binds to regulatory regions within the Tie2 gene and activates its transcription in endothelial cells
"In electrophoretic gel mobility shift assays and chromatin immunoprecipitation, GATA3 was shown to bind to regulatory regions within the 5′-untranslated region of the Tie2 gene."
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GATA3 physically interacts with the Ets transcription factor ELF1 and synergizes to transactivate the Tie2 promoter
"In co-immunoprecipitation and co-transfection assays, GATA3 and the Ets transcription factor, ELF1, physically interacted and synergized to transactivate the Tie2 promoter."
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GATA3 expression is downregulated by TNF-α resulting in reduced Tie2 expression
"exposure of human umbilical vein endothelial cells to tumor necrosis factor-α resulted in marked down-regulation of GATA3 expression and reduction in Tie2 expression."
A missense GATA3 mutation, Thr272Ile, causes the hypoparathyroidism, deafness, and renal dysplasia syndrome.
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The Thr272Ile mutation in GATA3 zinc finger 1 reduces DNA binding affinity and results in loss of interaction with cofactor FOG2
"EMSAs showed it to reduce DNA binding affinity, but not stability, and yeast two-hybrid assays demonstrated that the mutant GATA3 resulted in a loss of interaction with ZnF1 and ZnF6 of the cofactor FOG2."
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The Thr272Ile mutation significantly reduces GATA3 transcriptional activity by more than 65%
"The mutant GATA3 significantly reduced luciferase reporter activity by more than 65% (P < 0.001), and three-dimensional modeling"
GATA3 is a master regulator of the transcriptional response to low-dose ionizing radiation in human keratinocytes.
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GATA3 binds to promoters of genes responding to low-dose radiation and is required for the cellular response to ionizing radiation
"PCR amplification revealed GATA3 ChIP enrichment in 3 genes of the cluster after 1 cGy irradiation (GRCA, NRCAM, PPIL2)"
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GATA3 knockdown increases radiosensitivity to low-dose radiation and causes transcriptional deregulation in human keratinocytes
"ShGATA3 cells were found to be more sensitive than shSCR cells at 1 cGy, whereas no significant difference was observed after a dose of 2 Gy"
The transcription factors T-bet and GATA-3 control alternative pathways of T-cell differentiation through a shared set of target genes.
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GATA3 and T-bet occupy many of the same target genes and the choice between Th1 and Th2 lineage commitment results from their opposing action at shared targets
"T-bet and GATA-3 occupy many of the same genes, including those that are differentially expressed between Th1 and Th2 cells and play key roles in T-cell biology."
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GATA3 is co-expressed with T-bet in Th1 cells but T-bet activity is dominant in determining the Th1 phenotype
"Although both factors are coexpressed in human Th1 cells, T-bet activity would appear to be dominant and these cells exhibit an expression pattern that can be recapitulated in murine T-cells by expression of T-bet in the absence of IFNγ."
Murine and human T-lymphocyte GATA-3 factors mediate transcription through a cis-regulatory element within the human T-cell receptor delta gene enhancer.
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GATA3 activates transcription through tissue-specific GATA-binding sites in the human T-cell receptor delta gene enhancer
"The murine and human factors are abundantly expressed in a variety of human and murine T-cell lines and can activate transcription through a tissue-specific GATA-binding site identified within the human T-cell receptor delta gene enhancer."
GATA3 inhibits breast cancer metastasis through the reversal of epithelial-mesenchymal transition.
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GATA3 induces E-cadherin expression by directly binding to GATA-like motifs in the E-cadherin promoter
"GATA3 was found to induce E-cadherin expression through binding GATA-like motifs located in the E-cadherin promoter."
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GATA3 drives the reversal of epithelial-mesenchymal transition in invasive breast cancer cells, suppressing metastasis
"Ectopic expression of GATA3 in MDA-MB-231 cells led to a cuboidal-like epithelial phenotype and reduced cell invasive activity. These cells also increased E-cadherin expression but decreased levels of vimentin, N-cadherin, and MMP-9."
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GATA3 expression correlates with elevated E-cadherin levels, ER expression, and longer disease-free survival in breast cancer patients
"Studies of human breast cancer showed that GATA3 expression correlated with elevated E-cadherin levels, ER expression, and long disease-free survival."
GATA3 siRNA inhibits the binding of NFAT1 to interleukin-13 promoter in human T cells.
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GATA3 facilitates NFAT1 binding to the IL-13 promoter and is required for IL-13 transcription in activated T cells
"The binding of NFAT1 to IL-13 promoter was inhibited by GATA3 siRNA in activated T cells, which was followed by the reduction of IL-13 transcription."
c-Myb, Menin, GATA-3, and MLL form a dynamic transcription complex that plays a pivotal role in human T helper type 2 cell development.
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GATA3 autoactivates its own expression through direct interaction with c-Myb at their respective binding sites in the GATA3 promoter
"In primary T cells, c-Myb allows GATA-3 to autoactivate its own expression, an event that requires the direct interaction of c-Myb and GATA-3 on their respective binding sites in promoter of GATA-3."
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GATA3 forms a transcriptional complex with c-Myb, Menin, and MLL that is essential for Th2 cell development
"Immunoprecipitation revealed that the c-Myb/GATA-3 complex contained Menin and mixed lineage leukemia (MLL)."
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The c-Myb/GATA3/Menin/MLL complex mediates histone H3K4 methylation and H3K9 acetylation at the GATA3 locus during Th2 memory cell formation
"silencing c-Myb significantly decreased the methylation of histone H3K4 and the acetylation of histone H3K9 at the GATA-3 locus in developing Th2 and CD4(+) effector/memory cells."
A T-cell specific TCR delta DNA binding protein is a member of the human GATA family.
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GATA3 is a T-cell specific transcription factor that binds WGATAR motifs in the TCR delta gene enhancer and transactivates it
"The encoded hGATA3 protein, made in an in vitro transcription-translation assay, binds the WGATAR motif present in the human T-cell receptor (TCR) delta gene enhancer and, by transfection in HeLa cells, we show that hGATA3 can transactivate this TCR delta gene enhancer."
MiR-573 inhibits prostate cancer metastasis by regulating epithelial-mesenchymal transition.
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GATA3 directly induces miR-573 expression through binding to conserved GATA3 motifs in the miR-573 promoter
"ChIP analysis further corroborated that GATA3 binds to the promoter of miR-573"
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GATA3 downregulates FGFR1 expression and inhibits EMT in a miR-573-dependent manner in prostate cancer cells
"overexpressed GATA3 in VCaP and 22RV1 cells could down-regulate FGFR1 expression, whereas simultaneous miR-573 antagomir transfection attenuated this effect, suggesting that miR-573 is an important mediator of GATA3 that controls the expression of pro-metastatic genes"
Structure and expression of the human GATA3 gene.
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The human GATA3 gene contains six exons distributed over 17 kb with two zinc fingers encoded by separate exons
"We show that the human GATA3 gene contains six exons distributed over 17 kb of DNA. The two human GATA3 zinc fingers are encoded by two separate exons highly conserved with those of GATA1, but no other structural homologies between these two genes can be found"
GATA3 Bioinformatics Analysis Results
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GATA3 contains two highly conserved C4-type zinc finger domains that are 100% identical between human and mouse
"ZF1 and ZF2 show 100% identity between human and mouse. DNA binding domain (250-370): 92.56% identity with mouse. Extremely high conservation indicates critical functional importance."
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GATA3 forms extensive protein-protein interaction networks with 126 high-confidence interactors including T-bet, EP300, STAT6, and FOXA1
"126 total interactions identified. Validated Key Partners: TBX21 (T-bet): Mutual antagonism in Th1/Th2 fate decision, EP300/CREBBP: Histone acetyltransferases for transcriptional activation, STAT6: Cooperative Th2 differentiation, FOXA1: Pioneer factor cooperation in epithelial cells."
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GATA3 directly regulates 20 validated target genes across Th2 cytokines, T cell development, and epithelial function categories
"Major Target Categories: Th2 Cytokines: IL4, IL5, IL13 (all positively regulated), T Cell Development: CD4 (+), CD8A (-), TCF7 (+), ZBTB7B (+), Th1 Antagonism: IFNG (-), TBX21 (-), IL12RB2 (-), Epithelial Function: FOXA1 (+), ESR1 (±), MUC1 (+), CLDN4 (+)."
Falcon deep research report on GATA3
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GATA3 is a dual zinc-finger sequence-specific transcription factor that recognizes canonical GATA motifs (WGATAR / (A/T)GATA(A/G)) and functions as a lineage-determining transcription factor for type 2 immunity
"Recent literature consistently describes GATA3 as a **dual zinc-finger DNA-binding transcription factor** that recognizes canonical GATA motifs (e.g., **WGATAR** / (A/T)GATA(A/G)) and functions in immune and epithelial differentiation programs
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GATA3 is the master transcription factor for Th2 differentiation; upstream signaling includes IL-4/STAT6 plus TCR, IL-2, IL-7, and NOTCH
"**IL-4/STAT6** is described as a major driver of Th2 polarization, with additional inputs including **TCR**, **IL-2**, **IL-7**, and **NOTCH** signaling.
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GATA3 acts as a pioneer factor that can bind inaccessible chromatin and promote chromatin opening
"GATA factors are explicitly discussed as having **pioneer activity** (binding inaccessible chromatin and promoting chromatin opening), which is consistent with mechanistic reprogramming and enhancer-licensing models.
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GATA3 contributes to chromatin loop formation at type 2 loci and its deletion reduces loops in Th2 cells, integrating enhancer activity with 3D architecture
"a 2024 immunology review summarizes evidence that GATA3 contributes to **chromatin loop formation** at type 2 loci and that its deletion can reduce loops in Th2 cells, integrating enhancer activity with 3D architecture.
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A distal enhancer ~900 kb downstream of GATA3 (hG900/mG900) physically loops to the Gata3 transcription start site in Th2 cells; deletion impairs in vivo Th2 differentiation and HDM-induced allergic airway inflammation
"Kumagai et al. (PNAS, **published Jun 26, 2024**) describe an asthma-associated SNP-enriched region **~926–970 kb downstream** of human GATA3 (**hG900**) and show that activation of enhancers within hG900 correlates with GATA3 levels in human peripheral blood T cells; in mice, deletion of the homologous region (**mG900KO**) impaired **in vivo Th2 differentiation** and reduced **HDM-induced allergic airway inflammation**.
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4C-seq showed long-range chromatin looping between mG900 and the Gata3 transcription start site in Th2 cells, supporting a 3D-genome basis for stage- and context-specific Gata3 induction
"Mechanistically, **4C-seq** showed long-range **chromatin looping** between **mG900 and the Gata3 transcription start site** in Th2 cells, supporting a 3D-genome basis for stage- and context-specific Gata3 induction.
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ILC2-specific tandem GATA3-related super-enhancers (G3SE) drive high GATA3 expression in late ILC2-committed precursors; G3SE-deficient mice show ILC2 deficiency without affecting Th2 cells
"**G3SE-deficient mice** exhibited **ILC2 deficiency** in bone marrow and peripheral tissues (lung, liver, small intestine) with minimal impact on other ILC lineages or Th2 cells.
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GATA3 is essential for ILC2 development; ILC2 regulation can be IL-4/STAT6-independent, distinct from Th2 regulation
"GATA3 is also essential for type 2 innate lymphoid cell (ILC2) development and maintenance; importantly, the regulation of GATA3 in ILC2 can be **distinct** from Th2 regulation (e.g., ILC2 development can be IL-4/STAT6-independent).
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CHD4/NuRD restrains inappropriate GATA3 pioneer activity by promoting nucleosome positioning over GATA3 motifs, acting as a proofreading mechanism for transcription factor binding specificity
"Saotome et al. (Nucleic Acids Research, **Advance access Jan 28, 2024**) frame GATA3 as a **pioneer factor** in cellular reprogramming experiments; they show CHD4/NuRD can restrain inappropriate chromatin opening by promoting nucleosome positioning over GATA3 motifs, supporting a “proofreading” model for transcription factor binding specificity during reprogramming.
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As a transcription factor, GATA3's functional site is the nucleus, operationalized by nuclear immunohistochemistry in ER-positive breast cancer
"As a transcription factor, GATA3’s functional site is the **nucleus**, and multiple 2024 studies operationalize this by measuring **nuclear GATA3** directly
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AR activation increases nuclear AR-GATA3 interactions and AR-dependent enrichment of GATA3 chromatin binding; AR/GATA3 co-occupancy upregulates luminal differentiation genes including EHF and KDM4B
"AR activation (DHT) increased **nuclear AR–GATA3 interactions** and produced AR-dependent enrichment of GATA3 chromatin binding at a subset of loci.
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GATA3 is a core determinant of luminal epithelial identity in breast biology and is frequently used as a marker of luminal differentiation state
"GATA3 is a core determinant of luminal epithelial identity in breast biology and is frequently used as a marker of luminal differentiation state.
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GATA3 haploinsufficiency causes HDR syndrome (hypoparathyroidism, sensorineural deafness, renal anomalies), highlighting developmental requirement outside immunity
"Recent case literature supports that **GATA3 haploinsufficiency** causes HDR syndrome (hypoparathyroidism, sensorineural deafness, renal anomalies), highlighting a developmental requirement for GATA3 outside immunity and cancer contexts
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AKT activation and high 14-3-3tau levels lead to GATA3 phosphorylation, disrupting transcriptional control and promoting a basal-like phenotype
"**AKT activation** and high **14-3-3τ** levels were reported to lead to **GATA3 phosphorylation**, disrupting transcriptional control and promoting a basal-like phenotype.
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GATA3 Deep Research Summary
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GATA3 functions as a pioneer transcription factor capable of binding to nucleosomal DNA and initiating chromatin remodeling
"GATA3 also acts as a 'pioneer' transcription factor, meaning it can engage chromatin in its native (nucleosomal) state and initiate chromatin remodeling. GATA3 has the capacity to bind DNA motifs that are wrapped in nucleosomes and recruit chromatin-remodeling complexes to establish new enhancers."
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GATA3 expression is regulated by IL-4/STAT6 signaling and maintained through positive autoregulatory feedback
"Upon antigen stimulation of naive CD4+ T cells, cytokines like interleukin-4 (IL-4) (via the STAT6 transcription factor) and IL-2 (via STAT5) induce GATA3 expression. Once induced, GATA3 can maintain its own expression in a positive feedback manner that is independent of continued cytokine stimulation."
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The GATA3-AS1 lncRNA is required for establishing permissive chromatin at the GATA3 locus through MLL complex recruitment
"GATA3-AS1 is required to establish a chromatin environment permissive for GATA3 transcription. It recruits histone modification enzymes (such as the MLL complex for H3K4 methylation) and forms an R-loop structure at the GATA3 locus."
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity.
Electronic Gene Ontology annotations created by ARBA machine learning models
Combining SSH and cDNA microarrays for rapid identification of differentially expressed genes.
GATA3 haplo-insufficiency causes human HDR syndrome.
Interaction between hex and GATA transcription factors in vascular endothelial cells inhibits flk-1/KDR-mediated vascular endothelial growth factor signaling.
Lymphoid enhancer factor interacts with GATA-3 and controls its function in T helper type 2 cells.
HDR syndrome: a novel "de novo" mutation in GATA3 gene.
GATA3 inhibits breast cancer growth and pulmonary breast cancer metastasis.
Cutting edge: Type I IFN reverses human Th2 commitment and stability by suppressing GATA3.
T-bet, GATA-3, and Foxp3 expression and Th1/Th2 cytokine production in the clinical outcome of human infection with Leishmania (Viannia) species.
NKX3.1 is a direct TAL1 target gene that mediates proliferation of TAL1-expressing human T cell acute lymphoblastic leukemia.
A proteome-scale map of the human interactome network.
Widespread macromolecular interaction perturbations in human genetic disorders.
Dysfunction of the Reciprocal Feedback Loop between GATA3- and ZEB2-Nucleated Repression Programs Contributes to Breast Cancer Metastasis.
Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing.
GATA3 inhibits GCM1 activity and trophoblast cell invasion.
GATA3 interacts with and stabilizes HIF-1α to enhance cancer cell invasiveness.
Impact of cytosine methylation on DNA binding specificities of human transcription factors.
Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains.
Activation of the interleukin-5 promoter by cAMP in murine EL-4 cells requires the GATA-3 and CLE0 elements.
Gene Ontology annotation based on curation of immunofluorescence data
Gene Ontology annotation based on curation of intracellular localizations of expressed fusion proteins in living cells.
Altered subcellular localization of transcription factor TEAD4 regulates first mammalian cell lineage commitment.
USP21 deubiquitinates GATA3,IL33
RUNX1 binds the core TAL1 complex
RUNX1-containing TAL1 complex binds the MYB gene enhancer
FOXA1 and GATA3 bind to CCND1 promoter
Binding of AP1 transcriptional activator complexes to CCND1 promoter
CARM1 binds TBP:TFIIA:DDX5:ESR1:estrogen:TFF1 gene
TBP and TFIIA bind TATA box on ESR1:estrogen bound TFF1 gene promoter
DDX5 binds ESR1:estrogen:TFF1 gene promoter
ESR1 binds to TFF1 gene promoter
FOXA1 and GATA3 bind TFF genes
ESR1:ESTG and EP300 are recruited to TFF3 promoter
Histone acetyltransferases are recruited to the TFF1 gene
PRMT1 binds TBP:TFIIA:DDX5:ESR1:estrogen:TFF1 gene
ESR1:ESTG:PGR:P4 bind pioneer factors and coactivators
ZFPM proteins bind GATA proteins