{
  "focused_checked_head": "c09b6ef558e76630f55b08c7ea492060abada836",
  "closeout_head": "c09b6ef558e76630f55b08c7ea492060abada836",
  "incoming_main": "d7638df804395ce8c81baeea891fd75b60d58d39",
  "unchanged_frozen_nonshared_files": 226,
  "shared_exclusions": [
    "pages/projects/MODULE_TAXON_AUDIT.html",
    "pages/projects/MODULE_TAXON_AUDIT/inventory.json",
    "projects/MODULE_TAXON_AUDIT.md",
    "projects/MODULE_TAXON_AUDIT/inventory.json"
  ],
  "incoming_inventory_rows": 777,
  "retained_missing_rows": [],
  "result_inventory_rows": 777,
  "other_incoming_rows_exact": true,
  "retained_verified_completion_rows": {
    "apoptotic_execution_phase": {
      "merge_commit": "6cea7bd0a5c9ed4fa53bd44e7c9cafd4185e338a",
      "verified_paths": 185,
      "proof": "projects/MODULE_TAXON_AUDIT/proofs/pr5558-merged-content.json",
      "fresh_remote": {
        "mergeCommit": {
          "oid": "6cea7bd0a5c9ed4fa53bd44e7c9cafd4185e338a"
        },
        "mergedAt": "2026-10-27T18:54:34Z",
        "state": "MERGED"
      },
      "reverified_at": "2026-11-07T13:14:27.587428+00:00"
    },
    "bacterial_c_di_gmp_signaling": {
      "merge_commit": "70ad66f4836ff10f81b94a3ba82576eeb7577bd5",
      "verified_paths": 159,
      "proof": "projects/MODULE_TAXON_AUDIT/proofs/pr6062-merged-content.json",
      "fresh_remote": {
        "mergeCommit": {
          "oid": "70ad66f4836ff10f81b94a3ba82576eeb7577bd5"
        },
        "mergedAt": "2026-11-06T13:52:27Z",
        "state": "MERGED"
      },
      "reverified_at": "2026-11-07T13:14:28.250421+00:00"
    },
    "bacterial_cysteine_biosynthesis_via_o_acetylserine": {
      "merge_commit": "5ee4a089482fe5f950d583d7355f5df7aa5ef9aa",
      "verified_paths": 152,
      "proof": "projects/MODULE_TAXON_AUDIT/proofs/pr6120-merged-content.json",
      "fresh_remote": {
        "mergeCommit": {
          "oid": "5ee4a089482fe5f950d583d7355f5df7aa5ef9aa"
        },
        "mergedAt": "2026-11-06T14:52:34Z",
        "state": "MERGED"
      },
      "reverified_at": "2026-11-07T13:14:28.940620+00:00"
    },
    "bacterial_divisome_peptidoglycan_transpeptidation": {
      "merge_commit": "1970e159b929a11ec02b0bc86e64cebae7cf4c9e",
      "verified_paths": 125,
      "proof": "projects/MODULE_TAXON_AUDIT/proofs/pr6123-merged-content.json",
      "fresh_remote": {
        "mergeCommit": {
          "oid": "1970e159b929a11ec02b0bc86e64cebae7cf4c9e"
        },
        "mergedAt": "2026-11-06T15:47:31Z",
        "state": "MERGED"
      },
      "reverified_at": "2026-11-07T13:14:29.656351+00:00"
    }
  },
  "no_completed_rows_regressed": true,
  "validation_scope": "Integrated main d7638df804395ce8c81baeea891fd75b60d58d39 into scientifically revised head c09b6ef558e76630f55b08c7ea492060abada836, after focused checks. All 226 frozen files outside shared project metadata remain byte-identical. Incoming inventory rows are retained except this audit row and 4 independently reverified merged-completion rows; 0 missing historical rows are retained from this branch, and no completed audit regresses. This preserves the revised science and focused-check inputs. Full-corpus validation of these revisions has NOT run; historical passes do not cover them. Fresh review, CI and actual merge remain pending.",
  "preserved_files_sha256": {
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/approved-head-integration.json": "c98180d2b77b943115ce6ba06e8bfd567a4d4f0fd8f014594e6ae5091b8a9144",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/approved-main10-integration.json": "45fc33e2cff21fd3b283be08358bc578e45cbc8a45232025e96f70cdfd7b28c9",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/approved-main7-integration.json": "c9410abc548c7e3c709f9e1b3e19c4a070be9bd3debeb2ac2e125326ef4384e2",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/approved-main8-integration.json": "def8261c9de53fbf601b5fe7508d553f83cded68a9968501ece248b94e3bfee0",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/capacity-results.yaml": "3eae754ba7bef915a79bceed2ebf24ab85d5ddc5d3512fdceab0515c117d96c7",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/integration-checks.yaml": "f7341c5e70ae16e375fbeed011c247074fbecf86cbbf8b3e7bcf43e133a8a02d",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/main9-integration.json": "2f8c12f18185fc5603e88c37cfd966207ae59e80ff272455646ce36082da2b09",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/member-panel.yaml": "44f70681eeebdbc90868564dd66aca8cffa4377496b6b156d8e1359a1596c9a6",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/new-annotations.yaml": "842691e2302d50e1c5590be694d8922f456397d17dcc5377db5d4dcb57a98221",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/preexisting-reference-failures.yaml": "377ab6c9fe11764a84db2964dae3beb2f9a541645f3eae480b9ee3af89db84eb",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/review-5812319279-gene-followup/HP_0020-withdrawn-specific-proposal.json": "7d9bdc8a6c4f6342d95068e36d5b608fab45c42b16244fc6dbd6612403d5aede",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/review-5812319279-gene-followup/README.md": "06054eb5889fbaab759b05468d89c1792e4e5e3a3b9992cc3af127d199e5f538",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/review-5812319279-gene-followup/before.json": "6c004d351cf94f83f61f9e1c04a756675765a1f75377771023757d0132cbe0f2",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/review-5812319279-gene-followup/check.py": "b0652dd677ecd905a254d51bf65d1dc88175a986445a79cf4ed92039925421ef",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/review-5812319279-gene-followup/checks.json": "1a9091559cd8a28ce46c017dcba9c609fe0b9c9f2b0b223bf3eb1c426901e5b7",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/review-5812319279-gene-followup/handoff.json": "575c605a4068cc4e996c79d5b24cc525d9fb8a11297f8722641e7049e112794e",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/review-currency-20261107.json": "f841f349ecd130a6ed013f6279cb3ce2dca4be972797b9996750edc26d9756d6",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/seed-baseline.yaml": "98c693a11f02dc85aa474aa6a78c153611bed9744a307f99a29cb2daef8ad63f",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/source-closure.yaml": "778d89e22763bfbd8770da90170b7d5ade067e8e4e814900334aeb922eaa5a61",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/substrate-followup-20261107/capacity-results.yaml": "5663fe00a3480584c93d6931d309e31d8fe58f371ea5983197212851e587ba66",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/substrate-followup-20261107/integration-checks.yaml": "56b0c815feac5f673054cc4bf260eef95957f9bcf9e21f9af62c9ddd230d5233",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/substrate-followup-20261107/inventory-row-before.json": "217ed491e43c3de9008d178e15db6c273b2f40ee985c03a73bf5a013574ea599",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/substrate-followup-20261107/member-panel-before.yaml": "7df1d71681a2325d39157cb329ee0da55163200540223df848c224b89c721d63",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/substrate-followup-20261107/module-change-provenance.json": "6a382e0b14479ce7cb518f515c0472b5dce6c1c74a8e33b2b2de9a83eae3d6a5",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/substrate-followup-20261107/new-annotations.yaml": "6eaf2005eff325e5dbf3714f29d2771d48196d76d1683fb4bf1c4ef3a70c23d1",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/substrate-followup-20261107/review-5812319279.json": "fffed54b3ec5962197c9da95f88eea4333327e2ce0ffcacf460a5f6b5b61e149",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/substrate-followup-20261107/scoped-validation.json": "287f56378625b14a3302b7a77768b40c072ce47bfe565fbcd6e551f1b9835e1b",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/substrate-followup-20261107/source-closure.yaml": "778d89e22763bfbd8770da90170b7d5ade067e8e4e814900334aeb922eaa5a61",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/substrate-followup-20261107/withdrawn-HP_0020-representative.txt": "2bacee4bf252dfe554dab63ae34472e886dedce62f7d173daba5cff4920a6829",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/validated-head-integration.json": "73220f8756f0cc1b8dad7b8015115ba25dd7e38f82b5f974e7f1aff1e2228726",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/validated-head-main3-integration.json": "243cd586b456afbd279dd27716fd6797d2ca84f8c5ffa8a0fa778d7d68c6b35a",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/validated-head-main4-integration.json": "ae15901567efbeccdc03f2e82a71da8683b078f208bc6395458391e6adf5ecaa",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/validated-head-main5-integration.json": "01b7bb6627110cb362a3b54e0b341790a16e48e92e3c35934cffdf4857c93de9",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/validated-head-main6-integration.json": "9f680b426afc6134ef2ccaf77529ab754e36160f8cd92f87ad084adca07b1727",
    "analysis/module_audits/bacterial_carboxyspermidine_biosynthesis/validation-results.yaml": "2aa0adbfddd88f6cc94e28f30955914415c1dc3ee9529f70580b0e070727382a",
    "genes/9FIRM/CLOLEP_01502/CLOLEP_01502-ai-review.html": "a782aaff69ac8b9a6ac4faf4025bfa22a670f103199973ea72537159541eeed0",
    "genes/9FIRM/CLOLEP_01502/CLOLEP_01502-ai-review.yaml": "0a1e47bd336573187f8ff9f23ea7b9151b7eeee132abfe091a49d7fa9d88dfd5",
    "genes/9FIRM/CLOLEP_01502/CLOLEP_01502-goa.tsv": "d54dbd0909d401c212d69d43b1e852f764ebde9dad8d975e6b93545ffdf5d008",
    "genes/9FIRM/CLOLEP_01502/CLOLEP_01502-notes.md": "377958680a0476b68ed3b3052f83d837c4133d6992b6a2068b867d913875fdec",
    "genes/9FIRM/CLOLEP_01502/CLOLEP_01502-uniprot.txt": "703bb3e89952ea9927d3d0144de7b1397afdbb030b8592922a03fe8a1a1df833",
    "genes/9FIRM/CLOLEP_01503/CLOLEP_01503-ai-review.yaml": "e2abf65ff79fb0a016a6b1e7a7ff0612fe998b2270f29020111dbfd6affe4e02",
    "genes/9FIRM/CLOLEP_01503/CLOLEP_01503-goa.tsv": "dc271f59712c973b6329ae4a787994b4b85c2780b0a478d16efbae69a972e07e",
    "genes/9FIRM/CLOLEP_01503/CLOLEP_01503-notes.md": "64868e36475666d20bde4302c2fb6b61a8d1d7f84894d96490cc00b6f9de2fa0",
    "genes/9FIRM/CLOLEP_01503/CLOLEP_01503-uniprot.txt": "cefd43c50a3b3e2b8e3d0da5158c39a6f019a2cf685179cb318b526afab72d9f",
    "genes/AGRFC/Atu4170/Atu4170-ai-review.html": "d9bd49067b381718b4ca2b63a023bcf4c1855c4d1bb168e29c31cb9a6277a31d",
    "genes/AGRFC/Atu4170/Atu4170-ai-review.yaml": "11741ce4b63277fde108111137e4adbef4e28bb9a3a3ddd0b2f6d598631b1f99",
    "genes/AGRFC/Atu4170/Atu4170-assayed-refseq.fasta": "aa877ea6044fd906d1d408f52c6cd19e7ad6c07eeebb3701c4efd487faacfb20",
    "genes/AGRFC/Atu4170/Atu4170-goa.tsv": "2c4604f1e6da5c9c4f9e5ac3e5fc0e82e7beab30d3755cff5b97426e1b7036f8",
    "genes/AGRFC/Atu4170/Atu4170-notes.md": "855eab0e21ff4eb6a77c9ae78e05d08af3ff4fc69d76be73e2437c10ec8a03e4",
    "genes/AGRFC/Atu4170/Atu4170-uniprot.txt": "0f0cfdd0dd76832247f150f67d5a9b2d3a7b8164235a8e409d8f9f5d5c4e3b1c",
    "genes/AGRFC/nspC/nspC-ai-review.yaml": "a0c44b43d93ca6f9bd3e7aad63fb548c8f239a882c39055d464c4143f412dbc1",
    "genes/AGRFC/nspC/nspC-assayed-refseq.fasta": "256b3b75d17d089029cd13ae01b1f03d87ea6b7eeffce2fab5ffc51d8e6dba40",
    "genes/AGRFC/nspC/nspC-goa.tsv": "7a4cfbde43de29bac21e877188acd134b00d4035af488c45d93259737d5e22ab",
    "genes/AGRFC/nspC/nspC-notes.md": "cc2ac02d738776a788f55787b58fa7bbfb89dd28f2881a907a458dcd3ffdb7b0",
    "genes/AGRFC/nspC/nspC-uniprot.txt": "110b581416bcf42f83faa8ce39d07ce6f0d96baed4c9bf0fa863a06d691b8493",
    "genes/BACFG/HMPREF1080_01141/HMPREF1080_01141-ai-review.yaml": "b59974b8e2edd823d9a5d2f311e8ad9438f2d43e8a9d046277432bf1bd881995",
    "genes/BACFG/HMPREF1080_01141/HMPREF1080_01141-goa.tsv": "2c4604f1e6da5c9c4f9e5ac3e5fc0e82e7beab30d3755cff5b97426e1b7036f8",
    "genes/BACFG/HMPREF1080_01141/HMPREF1080_01141-notes.md": "d5a563f2a9191c67a8c9378c2f8474e843c60622e5c82d4d2aec4062d6ade3e9",
    "genes/BACFG/HMPREF1080_01141/HMPREF1080_01141-source-analysis/README.md": "342a787d335615b8c85bc463a45f30b7247ef6ce95aea8cb2bc537fc3051393b",
    "genes/BACFG/HMPREF1080_01141/HMPREF1080_01141-source-analysis/WP_005801052.1.fasta": "9b8acf1b27ff64f420985483ec75c75051e1c437481b02cfb12b506d02864785",
    "genes/BACFG/HMPREF1080_01141/HMPREF1080_01141-source-analysis/sequence-identity.json": "d5401a9343cca884f7b1adfc18aa2780d859f49d9bb255f06d1e69586feb8166",
    "genes/BACFG/HMPREF1080_01141/HMPREF1080_01141-uniprot.txt": "4d8b9ec7244746ee7e0988018011d16d9c31bc060182ec6b67d06c0b768e6bd4",
    "genes/BACTN/BT_0674/BT_0674-ai-review.yaml": "17a5c647426caf1b0604e9b827db7d422b6bf1904ccbe5434d916a976554ae84",
    "genes/BACTN/BT_0674/BT_0674-goa.tsv": "dad58bc46d34404820f6fb98033356901101c81bbecb1141b4f7489f93b7eaf8",
    "genes/BACTN/BT_0674/BT_0674-notes.md": "3e0851a74bed8ab0318719eaf9944d059fb1063d1b222e68c31e037631e4f3d4",
    "genes/BACTN/BT_0674/BT_0674-source-analysis/README.md": "beaca929381c3e085418efe592a638b22d399942460d5a6d4f8aa1ff5a253ec3",
    "genes/BACTN/BT_0674/BT_0674-source-analysis/fetch_figure.py": "5dcb95f4530295977fdc1973d997c34b077137cb72b47b1f20f2a55bc96316e5",
    "genes/BACTN/BT_0674/BT_0674-source-analysis/provenance.json": "b588e5dfba6c17d4bac9c7fef0bcb1f0cab6e807cdf1f12846479091d91ea63a",
    "genes/BACTN/BT_0674/BT_0674-uniprot.txt": "2bec2a3c41f83557d3dcfe1abd26064f7f4ea7cc74f436972483e762d036ca21",
    "genes/BACTN/BT_4612/BT_4612-ai-review.yaml": "7ed785698c38b5f7d588d7cce8d3f7e2c875013b38a1f441a54df2b6c463edb2",
    "genes/BACTN/BT_4612/BT_4612-goa.tsv": "2c4604f1e6da5c9c4f9e5ac3e5fc0e82e7beab30d3755cff5b97426e1b7036f8",
    "genes/BACTN/BT_4612/BT_4612-notes.md": "cb6e6d0852c48f23ffa9cbc98e0e69f231d74b944a938dca49ba1d183085e8b3",
    "genes/BACTN/BT_4612/BT_4612-uniprot.txt": "313c92fd7a7c30b0e1b40f45367408c5f5ac071b0b9f74a7990f66360cc22616",
    "genes/CAMJ8/nspC/nspC-ai-review.yaml": "1db4816380612f35f49d3f76f7559883939b8ebabeaba7ffbd83db8a3b2d69b7",
    "genes/CAMJ8/nspC/nspC-goa.tsv": "201b000d51ad34c795e0740e7cda0d4d3f72f8b36e408f867f53cbd91243b3e4",
    "genes/CAMJ8/nspC/nspC-notes.md": "73a7718a1b22a28a1553d68020c5edaaad82fbf84be6658e1eb1239041d5480d",
    "genes/CAMJ8/nspC/nspC-uniprot.txt": "0e69ef71844816921ec7b1a8d8da19567d5b5ce84ed6625e8b64f9dff729d060",
    "genes/CAMJE/Cj0172c/Cj0172c-ai-review.html": "91ba9dbe493ddfb7ea54341eb1d3141e617a5069962487886402b0f3fb0917cd",
    "genes/CAMJE/Cj0172c/Cj0172c-ai-review.yaml": "77aae62ab86bfedd91a30ea1997e7ee2a12bc35bca9565f877604473736dc5b3",
    "genes/CAMJE/Cj0172c/Cj0172c-goa.tsv": "f8ef178635de94fd4740003ea514d22e76baa79a5825a1c71b03ee1db6787b14",
    "genes/CAMJE/Cj0172c/Cj0172c-notes.md": "2af5d27153be1d01629e8cba97ab45c2eb67eaaaf39a995050310a0f17999857",
    "genes/CAMJE/Cj0172c/Cj0172c-uniprot.txt": "42fd7d14936e59086d2574fd0fd80127fd504be3d87a137e2c79ccfaa27cb32e",
    "genes/CAMJE/Cj1515c/3N29-polymer-entity-1.json": "7191d5b04fdd4fd6b75cb22c6e1cb95f00531542a24b67ab60d8d8061ac59500",
    "genes/CAMJE/Cj1515c/Cj1515c-ai-review.yaml": "93d1d364b3b6e00e0f7c88155e978db258b3f9622ca46a1c13a87ea891ccd5ff",
    "genes/CAMJE/Cj1515c/Cj1515c-goa.tsv": "a9ec5da269faddf5de67c4bffe87c8816a37dfc0faf31da0c1a8ed9ac3af34d7",
    "genes/CAMJE/Cj1515c/Cj1515c-notes.md": "77c31d1d5f0d919cd87079e4916bd2c3ec4f6f4c56aec4acb596694d2ca8e614",
    "genes/CAMJE/Cj1515c/Cj1515c-uniprot.txt": "94b74c4feb69d956df7358dc246d3989c976369780ad0f440dc458a682b229dd",
    "genes/HELPY/HP_0020/HP_0020-ai-review.html": "3f1d3354f00fffad84259c25bf95b670e3d997fdf0a5d5a9801de260251ed952",
    "genes/HELPY/HP_0020/HP_0020-ai-review.yaml": "cab7ae6d1257ace352cf2a4b9358a32e9148415ca7f6692a69f2028b154a0fce",
    "genes/HELPY/HP_0020/HP_0020-goa.tsv": "e2a91b14fbd0708c9e8e67ddd1f2b21fe943df7280c20c7ea1b339877ce20dbe",
    "genes/HELPY/HP_0020/HP_0020-notes.md": "8da8996e8a086a156d71d10068a1f65c7dac7bc2f3ea108a863774790bb08b3b",
    "genes/HELPY/HP_0020/HP_0020-uniprot.txt": "4ac634c4100fd78eb2696485dec1e03de2b27ae942f72dd018dfd42b1161a4e1",
    "genes/HELPY/HP_1507/8H52-polymer-entity-1.json": "413dee5a7af3a0fde94678db7cf0625b450ff672ca6764814510cb360b0c78d0",
    "genes/HELPY/HP_1507/HP_1507-ai-review.yaml": "0c4c14179f87fa263c8d822a8ef36867462ca393d597954927fe23d3f016c48a",
    "genes/HELPY/HP_1507/HP_1507-bioinformatics/README.md": "2b02df483ea14004e9d7754248123a526cc4b0be426a31d09dd923b150ed7e3a",
    "genes/HELPY/HP_1507/HP_1507-bioinformatics/RESULTS.md": "ce00404e564850abd30a7e10932cef21ba3dfad681154d9ffc6f3084d6367e58",
    "genes/HELPY/HP_1507/HP_1507-bioinformatics/data/3N29.pdb": "592b46b8d9c81680947852e5fc5c9eead0183d05893d34ed4d0323d956fcb0ce",
    "genes/HELPY/HP_1507/HP_1507-bioinformatics/data/8H52.pdb": "ec3fc32013e43ff43b82b5318d266d71ff8723d1620a7079ea9564d56a05c85e",
    "genes/HELPY/HP_1507/HP_1507-bioinformatics/justfile": "c5ef355705fde94ee16e4e534e0a528f7dea42ba2f876ed0a1a737ce9fee2dc3",
    "genes/HELPY/HP_1507/HP_1507-bioinformatics/pyproject.toml": "9d88c9e09f72e934bd97f47ef797466a44e47c856d804c78bf7150ffc7b7980a",
    "genes/HELPY/HP_1507/HP_1507-bioinformatics/results/3N29-PLP-control.json": "add61df18fd798e0bc94f5c5312fa88b7add522d4a3b5d6a6f4d58ebda6bc7b9",
    "genes/HELPY/HP_1507/HP_1507-bioinformatics/results/8H52-NADP-contacts.json": "1938022730dcf9d28cfe6e2cd154577706e9d1cca454b500993f6e26a0f86ab6",
    "genes/HELPY/HP_1507/HP_1507-bioinformatics/scripts/ligand_contacts.py": "4fd18374adc74ff05ad761df6ea9d2774d384e63c70d2b968594dfb6956690c6",
    "genes/HELPY/HP_1507/HP_1507-bioinformatics/uv.lock": "f855c7572931e34f5ae02a03df687409b3b534cf6d61018f0b8dd972a0056f85",
    "genes/HELPY/HP_1507/HP_1507-goa.tsv": "2c4604f1e6da5c9c4f9e5ac3e5fc0e82e7beab30d3755cff5b97426e1b7036f8",
    "genes/HELPY/HP_1507/HP_1507-notes.md": "7348c56aab1b5558a7279c873193240de06662a0f2a535216616ca3a6d6cea45",
    "genes/HELPY/HP_1507/HP_1507-uniprot.txt": "6a6db657059a0859148ec9982f9f1fd0d6db5312622fb8f17eb0a16e031706aa",
    "genes/PARDP/Pden_2955/Pden_2955-ai-review.yaml": "267f6e680977f091fc33d4f872162cf8b6a9c9811f7a12d001e6cc46403061de",
    "genes/PARDP/Pden_2955/Pden_2955-assayed-refseq.fasta": "e03cd6b3c6051066177e49a69597ec3d7bfd0ac2e16c79e34f36b9dda5c05aad",
    "genes/PARDP/Pden_2955/Pden_2955-goa.tsv": "2c4604f1e6da5c9c4f9e5ac3e5fc0e82e7beab30d3755cff5b97426e1b7036f8",
    "genes/PARDP/Pden_2955/Pden_2955-notes.md": "855bdef41ae22f20f2acf6a9c28277935484465c46ed9ad7546beced1624ee54",
    "genes/PARDP/Pden_2955/Pden_2955-uniprot.txt": "b4fbe7aced93b9ac7e94ec43d55a0834f6cb7cb9c47810ceff3209e440078f33",
    "genes/PARDP/Pden_2956/Pden_2956-ai-review.yaml": "70c05d475ee228d268aaf358b2a46caad29962c8eeeb29d785976f6cce07d195",
    "genes/PARDP/Pden_2956/Pden_2956-assayed-refseq.fasta": "da0c769a3cf97f1ac337d18c8e4f9961cda85f9e3dc60bba123e957c6b0f11f8",
    "genes/PARDP/Pden_2956/Pden_2956-goa.tsv": "3597bcec746276ff6036c6aec2e40aa1fc6780235f8d532ea8cdc7103e593e8d",
    "genes/PARDP/Pden_2956/Pden_2956-notes.md": "7a8b9b6b25a715cd8e639dea231b02ca1a445a94a03ac549323617932e6de620",
    "genes/PARDP/Pden_2956/Pden_2956-uniprot.txt": "57900938d1da74dc0711f4dbfc0c514dedd02a2d9d0a3042d0fc731b22331973",
    "genes/PSEPK/PP_2928/PP_2928-ai-review.yaml": "ce9e4b8ec477141abe1c763cad1a8b4d65c56dce9d26ccbc76f7d08c124122ac",
    "genes/PSEPK/PP_2928/PP_2928-notes.md": "485bbdbf9cffebc9861de942402a510cbc28f9b4a2dd268d5a49b8ae868c6458",
    "genes/PSEPK/nspC/nspC-ai-review.html": "338eee5bec3bd8c66d669d57d5e67f450137553ce2447842f7329f11dc49e94d",
    "genes/PSEPK/nspC/nspC-ai-review.yaml": "9c918cb1fd613b1fd74b1faef91a241d50e91e14f220f0719314d63b3bb6e1e5",
    "genes/PSEPK/nspC/nspC-notes.md": "cc50331ec4908f637612962968d3745ab268c1d5dea8240637e4a70b3d061e8a",
    "genes/VIBCH/VC_1624/VC_1624-ai-review.yaml": "2c10ad8bcb217f24d603505f71a140187ff224eebf56f3738a73f78805067d01",
    "genes/VIBCH/VC_1624/VC_1624-notes.md": "6aa1e170072a4736a4eab2059db9bf9ad612d5dbd750fa26b5f8cb28462a0fa9",
    "genes/VIBCH/nspC/nspC-ai-review.yaml": "3c55141d02b0ad79cea0ae1a64d3fcce11a027289cb363ea0132ffb173ecdd01",
    "genes/VIBCH/nspC/nspC-notes.md": "6df7144ced3f57fbbd5fad14cfae65722e3ffaf8467abbf4b6b94fceae40da99",
    "history/genes/9FIRM/CLOLEP_01502/2026-11-06T050950Z-codex-21413b.yaml": "0088db62dad5f5a8f77cc3e8717afa12ecab3408ca2ce8db9413d74204842be6",
    "history/genes/9FIRM/CLOLEP_01502/2026-11-07T130430Z-codex-ea0d17.yaml": "ee45d36bff7959833b64b9d584f50dd44f7ffc7d9ba935058a71609994226cf7",
    "history/genes/9FIRM/CLOLEP_01503/2026-11-06T050951Z-codex-6cf47f.yaml": "72012bc5e35afcd5992a628f6f8f811f57009e4a4caf9d3a9c158a39679ae61d",
    "history/genes/9FIRM/CLOLEP_01503/2026-11-06T063026Z-codex-aeb1b4.yaml": "c0aaa9e92457da65029ec75edb96e4f177f391da35ff58db034d9f243cb91687",
    "history/genes/AGRFC/Atu4170/2026-11-06T050335Z-codex-295cff.yaml": "ad3ac5db8f4f1d9834f0133507f9658ad947d9695f59784163b228f135d7d766",
    "history/genes/AGRFC/Atu4170/2026-11-06T051532Z-codex-48a613.yaml": "04d6f254049f1e13a1693b45a16cac5d40424400975e2aa12dccefade5963954",
    "history/genes/AGRFC/Atu4170/2026-11-06T062916Z-codex-dcf109.yaml": "a601654c1b8d2de7c6d82071544699ca45ee15d48a22a7e81a72dcaa7000b054",
    "history/genes/AGRFC/Atu4170/2026-11-07T130429Z-codex-969efb.yaml": "6b00a091d0c16a526aa036c4869d3d9a183d448c8cf3e03c276f970c33e78f1a",
    "history/genes/AGRFC/nspC/2026-11-06T050335Z-codex-56d647.yaml": "d4d533d0801ffd41220da798097850cb85256ed08920f573786817048a7e75a8",
    "history/genes/AGRFC/nspC/2026-11-06T051532Z-codex-e85c3f.yaml": "40e73dfc4e232eb2926b4eefc436e8bf7773d9e766e8d3a96a10f639b07a718d",
    "history/genes/AGRFC/nspC/2026-11-06T062916Z-codex-90573d.yaml": "f65830e60aa06457541f0a2eb74231845bd62fe66b40ed5192d252a8fc50a059",
    "history/genes/BACFG/HMPREF1080_01141/2026-11-06T050949Z-codex-b9dbe8.yaml": "d12daee778f054b58f329ca9e7ba0f0d7ea73c9b5b9fb37921813bf369cf9720",
    "history/genes/BACTN/BT_0674/2026-11-06T050948Z-codex-b0ff64.yaml": "488b6dd269639473ebcb4d1dd1c5994410b0eba6bd0ce889e0dd90d2c6c7d434",
    "history/genes/BACTN/BT_0674/2026-11-06T062842Z-codex-8a15de.yaml": "75cc8ff0a2e6e1c032a2d7cb2c121aaff5ad9fccf50b7a2243e2f03c55ec7e07",
    "history/genes/BACTN/BT_0674/2026-11-06T231512Z-codex-20b91b.yaml": "2d6811f2fed018eb06b9adcb2494e5fd7a3a6af4de839c3392a6a3e0740bf1db",
    "history/genes/BACTN/BT_4612/2026-11-06T050947Z-codex-de68b9.yaml": "5f4a1aab3616e4cb35d567167aed6a1b82c154c6a2d9140c2a7958098b69fead",
    "history/genes/CAMJ8/nspC/2026-11-06T050403Z-codex-6078be.yaml": "9816be9e1ba37ea7e8d62f6d8047954ce71612c7b7c7fe2fa3939261425f1025",
    "history/genes/CAMJ8/nspC/2026-11-06T062830Z-codex-7b8b69.yaml": "7f0e45039c76058866cf585cb27e90e9a6edf0ad49ef7001d335a088b7119d03",
    "history/genes/CAMJE/Cj0172c/2026-11-06T050403Z-codex-a1822a.yaml": "f1a95345c6a05d11aa128b8449a84edd3ebd72b4a3556826e578db5b2258f8be",
    "history/genes/CAMJE/Cj0172c/2026-11-06T051541Z-codex-d2deac.yaml": "f2cc9204b3a1e6b9355fc2e3cbb59e789f0affc13c35c59cb82c13bc14e952ab",
    "history/genes/CAMJE/Cj0172c/2026-11-07T130429Z-codex-9b42f1.yaml": "0b0c4cddb900765065a7f732bcc3a90769bff769e452e07ac1ea312d8a60c189",
    "history/genes/CAMJE/Cj1515c/2026-11-06T050403Z-codex-bef210.yaml": "14cd2324fd41d46f5cfde4a5ea86e8d787f90bccdbbd067da95709f37ec7bb18",
    "history/genes/HELPY/HP_0020/2026-11-06T050403Z-codex-814053.yaml": "7a653262a330ac09ad73c85a9bb518bb89640029c9dd5fba885c9f715178112a",
    "history/genes/HELPY/HP_0020/2026-11-07T130412Z-claude-code-ed43bc.yaml": "c07d704e449e48ccd31fb901a4aa30781cb2da9103272966174ffe5de2bf93a9",
    "history/genes/HELPY/HP_1507/2026-11-06T050403Z-codex-d62038.yaml": "33f77e70c08ac68c2414789e8851780e5a0a41969636db892265d55fd9ff454b",
    "history/genes/HELPY/HP_1507/2026-11-06T051531Z-codex-5eed19.yaml": "923081f5f48959559669f194d7c4f47886828e2441b662e6f617c542def16667",
    "history/genes/HELPY/HP_1507/2026-11-06T062842Z-codex-7de53c.yaml": "0f76b6c6cd7cd029f8f04b1c45d808dff859b0fab70d6d1074043cf7fec4e23c",
    "history/genes/PARDP/Pden_2955/2026-11-06T050336Z-codex-ec57e8.yaml": "063f2e5436e51173cbc8aeb46f8c38fce6bdffa36eeb04f7b325bf76b6e19cd1",
    "history/genes/PARDP/Pden_2955/2026-11-06T051532Z-codex-fa7181.yaml": "570b37108e7881ce494558e85add0d0e63b4ef53a1c88aca9df26a1b0d38b3e6",
    "history/genes/PARDP/Pden_2955/2026-11-06T062917Z-codex-cf9f60.yaml": "90e5c94205552366d6ef8d2828665be05b3021432ba087b94e8c622638da2059",
    "history/genes/PARDP/Pden_2956/2026-11-06T050336Z-codex-791097.yaml": "a2da3587d588b77e5636ad1f5a252656ef488810d1e58a0d43d2d2f735e4099f",
    "history/genes/PARDP/Pden_2956/2026-11-06T051533Z-codex-2ce180.yaml": "b825ab67091a6c9ea7565692edacdd482d5a6982a7efbe0f7bab7dc99b273502",
    "history/genes/PARDP/Pden_2956/2026-11-06T062917Z-codex-f55c2c.yaml": "f536bf81485a29f891e1ff6003f5249164fde676db9fb58af5432c140b855f73",
    "history/genes/PSEPK/PP_2928/2026-11-06T045824Z-codex-d03dbe.yaml": "a9d04c48b915926eadebd58e0d66b8d51a0e76c7d5b5d5cee1b28fd1bc9b24bd",
    "history/genes/PSEPK/nspC/2026-11-06T045824Z-codex-14bc8b.yaml": "0107d91e7517d48f2acd9c2bfbffa070c0761ac6e409abac829480955e1852ad",
    "history/genes/PSEPK/nspC/2026-11-07T130429Z-codex-a6b3af.yaml": "0dad5724545cce46bdc610ffff0a833e3f55532f5271b2de4aef05f864c7d048",
    "history/genes/VIBCH/VC_1624/2026-11-06T045823Z-codex-a9bbd5.yaml": "3c17c953bd7bbe16eec19d9018ffded00fba127ac15cb02ccc318f69da2e04ee",
    "history/genes/VIBCH/VC_1624/2026-11-06T062830Z-codex-1ca068.yaml": "0faab143926c35a38113d8dc8e079494c72c3861bc8d32883b73472b21838ee1",
    "history/genes/VIBCH/nspC/2026-11-06T045824Z-codex-d2bff7.yaml": "3cdf4eee95cc315f8fa82bcd1cdb67b1a789543c9e85b25912abc81f71984c8a",
    "history/genes/VIBCH/nspC/2026-11-06T062830Z-codex-61c961.yaml": "162c7437e14b03d2262e827a8d78c6d12c6a42629029ca8dd6aa6137e6d9cee3",
    "history/modules/bacterial_carboxyspermidine_biosynthesis/2026-11-06T045255Z-codex-1029a2.yaml": "bfe54cc9a4dffc1f3e504b7a2cadcfb787d880063775d194311f2c9b8d5b299c",
    "history/modules/bacterial_carboxyspermidine_biosynthesis/2026-11-06T051734Z-codex-3007d7.yaml": "6a7eba89f541abec5b4830035f3303a58510c6503ecaa557da2b41fa8cf3dab1",
    "history/modules/bacterial_carboxyspermidine_biosynthesis/2026-11-06T063202Z-codex-821e72.yaml": "6c7589b3f3102747c0ce82e571841f25b25fec01c7ed903f0d71366ebab004ef",
    "history/modules/bacterial_carboxyspermidine_biosynthesis/2026-11-06T231510Z-codex-9f8d98.yaml": "b4f252bbb6b200b816e2bdb948dccabe913489c3c291ef835bd4fc71d1ce429a",
    "history/modules/bacterial_carboxyspermidine_biosynthesis/2026-11-07T130431Z-claude-code-b61bcb.yaml": "900c47f81f9c491bbbfb3c37d0240a5f5d57f64e059dc4e4ed726780db5740d4",
    "history/other/PTHR43727/2026-11-06T051734Z-codex-a8ab36.yaml": "b437efbf68317b5b70c558b69b628ad76f597f97f786e226830ba951d4446a52",
    "history/other/PTHR43727/2026-11-06T052524Z-codex-cb98f3.yaml": "0c1b30cb340aa7e21e6286d1d23e8da97f4932c6a0001c5260e30d2019297f6c",
    "history/other/PTHR43727/2026-11-06T052558Z-codex-4ca622.yaml": "c55887f1067e1dda8103c740848df8c202a7cd787802119da250047591fc24a1",
    "history/other/PTHR43796/2026-11-06T051734Z-codex-a25437.yaml": "2f0db835dfabdbc4aa845efa014a03aa3b9b740812b4d2a884a77331de73c59e",
    "history/other/PTHR43796/2026-11-07T130446Z-codex-6bf817.yaml": "183fcddde3923bca6b2b5fcdc581e33b4cd8becbec4924b7ca522decb0a0bc07",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-06T052046Z-codex-56abb0.yaml": "0f9ff2dea1136a346444402b7f1cba067cb541097659e49845f56f6bcaa3d77f",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-06T063203Z-codex-a63083.yaml": "28f49b34b1a5972479308d925c63ef65c755f018a6381d03a0b08646be5ba30c",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-06T141723Z-codex-b952e1.yaml": "7a5dd9231a76cf4f45726fd32efa3c27fba74bc5815db1a277035ccf42171534",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-06T143624Z-codex-4986d6.yaml": "a3a825bab6482a1809ddfec4f41d02f78913956d68c65bcde4a92d2b98898671",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-06T161841Z-codex-86d3ea.yaml": "d1d3d4f9ae37f5607f30f3f8f25c0eee6ff69b629e253dea16d5811bdf8bfc0f",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-06T161944Z-codex-3395cb.yaml": "dce7484771b9f0b49cc671398ae351d33095b7d457285e75729874be9cd86fe2",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-06T171812Z-codex-0348c9.yaml": "4361e84c616fd08ec6e8054ae9570109e5456ff0da098c8caf2bfb8184b1f4a6",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-06T185117Z-codex-baf02d.yaml": "643cd10cd09a694af945f66e6e1d01bf33fc39b76d2a6edf79c3f0760b2f7039",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-06T190610Z-codex-a4410e.yaml": "eda4d40ac1e8600fc93e60d3b44cf5bdeb40d83afa19176f342bd2a6130f170c",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-06T204139Z-codex-37c3c7.yaml": "f2cd15f19315710da3153652b46827f87896a8785675c2390c24a8aba2759d47",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-06T213142Z-codex-89ac96.yaml": "b7add08202a15505f9ccd55ffab6e8d2596c36ab58ebb6561337ea5b977ac0c2",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-06T224130Z-codex-8ed70b.yaml": "22bfd3c35b040f3126574050c392461377c5d8b5073d3fe7c32ec0068c1d7242",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-06T231511Z-codex-fad19b.yaml": "4649f65fa207275baf99ec664d78084143bbeaec16928248676050cc8de47549",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T011843Z-codex-6ac4fc.yaml": "be0dd23e1a9d9f227dd1dc91d3908dacff090537a3f36556d9232ce621f0cd1f",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T013319Z-codex-1445ea.yaml": "b9df8b6a2ecbbd7de2723235993cd939be95c6874d8225a636de7ae438dcf59b",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T024416Z-codex-1383a0.yaml": "9d8de0d94cad444788880e0ae5894e078afc01aec7a3430a77803ec359d0b244",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T053349Z-codex-88f9ba.yaml": "67ffbc9181c3e139c8f679b1f253770ef62fba7b6eb7de5c62a24d1740553e22",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T063328Z-codex-a5721d.yaml": "40df644172712c30572be8a681abf5803e2e7cffbfcbf84b2d9f050920e2669f",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T063615Z-codex-41b519.yaml": "9878a2758f5de08f1e451fbe68cd3d867a30af31a0e88c5880f5ef325be41bcd",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T070559Z-codex-f182d0.yaml": "86da550cf87b59a9e245d5ead98e5e030eac25e2367ccc355030f10df6ba7df7",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T130622Z-codex-b20baa.yaml": "4293d8377bcdeb9b371631b2dcefda861479096b00e704baf17d51ac042853b1",
    "interpro/panther/PTHR43727/PTHR43727-review.yaml": "f5ab51d3acbe403505ac011de03e284df8016be58aee18c4aa2d84e2eeb6941f",
    "interpro/panther/PTHR43796/PTHR43796-review.yaml": "e4526428ae38f47ab761c7bf7c6161ca4d76486ad1047310a6c10ce503533a8c",
    "modules/bacterial_carboxyspermidine_biosynthesis-notes.md": "bfe0ee4102588574567292e5350002f1331b4e965306beacd40e3d1a56564abd",
    "modules/bacterial_carboxyspermidine_biosynthesis-source-analysis/PMID40074085-supplement-provenance.json": "214f7cf763bc82bc9021336199c9883586a656a4cd5666f14f4a59880651f7d0",
    "modules/bacterial_carboxyspermidine_biosynthesis-source-analysis/PMID40074085-supplement.pdf": "99c79eb98e1c53a1557dd30e43a3282cc14bd302717e3f96ed81bbeddca771d0",
    "modules/bacterial_carboxyspermidine_biosynthesis-source-analysis/PMID40074085-supplement.txt": "b8571e3fe709ad5dc4672ae000b3a44f9763d34fd92356b2da7c8b682ed26216",
    "modules/bacterial_carboxyspermidine_biosynthesis-source-analysis/check_audit.py": "5ddef617ab50b63aceec5ff93bc42e988762741970b56836af520b7a8a9c0171",
    "modules/bacterial_carboxyspermidine_biosynthesis.yaml": "ad920aacd3802ef99d2b848e4cc32b6314e966912f4a7f04fe1aff66eaf0be9e",
    "pages/modules/bacterial_carboxyspermidine_biosynthesis.html": "01bc2fb97cb6a15c6b857c30a1e8014db2e6db74aee0c58c8a4d5b6e75364c91",
    "pages/projects/MODULE_TAXON_AUDIT/proofs/apoptotic-execution-completion-panel.json": "4077ae2a47b99ba9c81404cd17997fe4a18af3a60f54a31d195d8003b80f24c1",
    "pages/projects/MODULE_TAXON_AUDIT/proofs/current-main-merged-scope-verification.json": "c304d2c06d0001f28d4292e95f43aaaea9b7e2ec35b1674445f51389c8f47417",
    "pages/projects/MODULE_TAXON_AUDIT/proofs/pr6120-merged-content.json": "81f81b7717896c30f41029bb5a5d9581d6865a03fca758d102ac75da50be55ba",
    "pages/projects/MODULE_TAXON_AUDIT/proofs/pr6123-merged-content.json": "843bed9d6ce3fde9feb3b214962784914b0891933fd5fc7e6f7207ecf8a39d3b",
    "pages/projects/MODULE_TAXON_AUDIT/proofs/pr6124-merged-content.json": "9e95ce12c1d137dc9335040a93f98f49a780054a0bcd4db6694e0a939dd6eeb4",
    "projects/MODULE_TAXON_AUDIT/proofs/apoptotic-execution-completion-panel.json": "4077ae2a47b99ba9c81404cd17997fe4a18af3a60f54a31d195d8003b80f24c1",
    "projects/MODULE_TAXON_AUDIT/proofs/current-main-merged-scope-verification.json": "c304d2c06d0001f28d4292e95f43aaaea9b7e2ec35b1674445f51389c8f47417",
    "projects/MODULE_TAXON_AUDIT/proofs/pr6062-merged-content.json": "779b2e23688bef624b83ce5918d7b450ee472c7e844e53019df813b39ae5b808",
    "projects/MODULE_TAXON_AUDIT/proofs/pr6120-merged-content.json": "81f81b7717896c30f41029bb5a5d9581d6865a03fca758d102ac75da50be55ba",
    "projects/MODULE_TAXON_AUDIT/proofs/pr6123-merged-content.json": "843bed9d6ce3fde9feb3b214962784914b0891933fd5fc7e6f7207ecf8a39d3b",
    "projects/MODULE_TAXON_AUDIT/proofs/pr6124-merged-content.json": "9e95ce12c1d137dc9335040a93f98f49a780054a0bcd4db6694e0a939dd6eeb4",
    "publications/PMID_20534592.md": "6d11ed057d48d5c991ca109278a8bac44e8d049a72cb3c36129106b88454674f",
    "publications/PMID_22025614.md": "8a165ee27085426dad7a4802609ddc334cbab57db5d7f78774ab2c17475a6679",
    "publications/PMID_26682642.md": "48e24f761e60c58755c64ceaa332ceab9f5bf9cf914b645a39467282cd480946",
    "publications/PMID_27268252.md": "af5b8498447a06209be311b9f034beb5f018a672e51f7c22ad8895ad27b936e6",
    "publications/PMID_30254075.md": "ceeed2ca78d8062bc7f78a337c93f639f59819a2199eeaf0335ab528431c3dfe",
    "publications/PMID_35648468.md": "35feb5984caf6d7d6f0ace8f742607890f96b7b3329e5a48f1d9b939b82f539e",
    "publications/PMID_37437886.md": "683e6e7a99b28571d8bc41ca4522d006e87c9934f2f543a38d66d6efa131f946",
    "publications/PMID_39887002.md": "0391dc46026f0936ecbe4d68a7c20a6eaaa840b37c9288acc4a1644bb0f2c9e6",
    "publications/PMID_40074085.md": "b0268d6d150c7d8043465a475528eccfc4dc29a6ebbb353ff1e0cf2bf9f39747"
  },
  "formatting_equivalence": {},
  "inventory_status_counts": {
    "COMPLETE": 41,
    "NOT_STARTED": 727,
    "PR_OPEN": 8,
    "IN_PROGRESS": 1
  },
  "rendered_ledger_snapshot": "- [ ] Ledger snapshot after this integration: 777 modules; 41 COMPLETE, 8 PR_OPEN, 1 IN_PROGRESS, 727 NOT_STARTED. Counts retain dated row evidence and are not a fresh global GitHub survey.",
  "inventory_sha256": "89b55c9c868ef2fb914b679eb049c4dd4055589d4bb660a2f9fac018241382b3",
  "incoming_paths_after_validated_branch": [
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/approved-approved-main3-proof.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/approved-main-20261107-1155.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/approved-main-6167-20261107-0953-proof.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/approved-main2-integration.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/baseline.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/comparative-members/3W01-mapping.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/comparative-members/3W02-mapping.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/comparative-members/4JEJ-mapping.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/comparative-members/4MM1-mapping.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/comparative-members/4NAE-mapping.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/comparative-members/4NAF-mapping.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/comparative-members/PMID24684232-fulltext-scope.md",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/comparative-members/baseline.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/comparative-members/consultation.md",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/comparative-members/identity-and-scope.md",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/comparative-members/ontology.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/comparative-members/preservation.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/comparative-members/preserve.py",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/comparative-members/validation.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/existing-members-consultation/check_preservation.py",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/existing-members-consultation/findings.md",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/existing-members-consultation/preservation.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/existing-members-consultation/quickgo-terms.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/existing-members-consultation/validation.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/family-grounding.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/final-ledger-snapshot-repair.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/full-run.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/main-integration-20261107-1153-consultation/README.md",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/main-integration-20261107-1153-consultation/comparison.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/main-integration-20261107-1153-consultation/handoff.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/main-integration.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/main2-integration.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/main3-integration.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/new-bacillus-members/action-ledger.yaml",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/new-bacillus-members/consultation.md",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/new-bacillus-members/go-additional-definitions.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/new-bacillus-members/go-provenance.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/new-bacillus-members/go-term-definitions.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/new-bacillus-members/proof.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/new-bacillus-members/seed-baseline.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/new-bacillus-members/validation-receipt.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/new-bacillus-members/verify.py",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/root-final-consultation-receipt.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/root-new-bacillus-receipt.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-full-validation.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/action-ledger.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/all-exact.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/all.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/archaea.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/bacillota.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/bacteria-exact.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/bacteria.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/bacterial-comparators.md",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/bacterial-rows.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/bacterial-uniprot.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/baseline.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/checks.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/comparator-adjudication.md",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/comparators.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/ether-parents.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/eukaryota.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/glycerophospholipid-parents.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/go-terms.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/hamap.html",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/hamap.txt",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/query-provenance.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/receipt.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/response.md",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-gene-consultation/verify.py",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-main-integration.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-root-gene-receipt.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-root-preservation.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/round1-root-prose-changes.json",
    "analysis/module_audits/bacterial_heptaprenylglyceryl_ether_lipid/scope-and-evidence.md",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/azotobacter-consultation/AF010139.1.embl",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/azotobacter-consultation/README.md",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/azotobacter-consultation/check_preservation.py",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/azotobacter-consultation/member-map.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/azotobacter-consultation/preservation.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/azotobacter-consultation/render-checks.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/azotobacter-consultation/seed-baseline.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/azotobacter-consultation/source-preservation.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/baseline.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/capacity-consultation/README.md",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/capacity-consultation/build_ledger.py",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/capacity-consultation/capacity-results.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/capacity-consultation/check_capacity.py",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/capacity-consultation/classification-provenance.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/capacity-consultation/evidence-ledger.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/capacity-consultation/handoff-v2.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/capacity-consultation/handoff.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/capacity-consultation/interface-evidence.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/capacity-consultation/verification.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/check_preservation.py",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/ecoli-consultation/check_preservation.py",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/ecoli-consultation/go-ancestors.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/ecoli-consultation/go-definitions.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/ecoli-consultation/preservation-baseline.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/ecoli-consultation/preservation-results.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/ecoli-consultation/row-review-ledger.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/ecoli-consultation/scientific-findings.md",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/ecoli-consultation/validation-results.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/family-consultation/baseline.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/family-consultation/hsp110-exception-baseline.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/family-consultation/receipt.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/family-consultation/response.md",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/family-consultation/source-scope.md",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/family-consultation/verify.py",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/final-boundary-consultation.md",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/final-module-integration.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/final-primary-reference-audit.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/full-validation.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/main-integration.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/psepk-consultation/action-ledger.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/psepk-consultation/baseline.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/psepk-consultation/checks.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/psepk-consultation/ontology.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/psepk-consultation/publication-receipt.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/psepk-consultation/receipt.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/psepk-consultation/response.md",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/psepk-consultation/verify.py",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/psepk-handoff-files.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/reference-audit.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/root-azotobacter-receipt.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/root-capacity-receipt.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/root-capacity-results.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/root-ecoli-receipt.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/root-family-receipt.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/root-focused-checks.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/root-preservation.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/root-progress.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/root-psepk-receipt.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1-full-validation.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1-main-integration.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/README.md",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/azovi-consultation/README.md",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/azovi-consultation/baseline.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/azovi-consultation/check_preservation.py",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/azovi-consultation/go-ancestors.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/azovi-consultation/go-definitions.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/azovi-consultation/handoff.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/azovi-consultation/history-paths.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/azovi-consultation/preservation.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/azovi-consultation/scientific-findings.md",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/azovi-consultation/validation.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/baseline.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/capacity-consultation/README.md",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/capacity-consultation/additional-controls.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/capacity-consultation/capacity-results.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/capacity-consultation/check_round1.py",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/capacity-consultation/closure.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/capacity-consultation/evidence-ledger.yaml",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/capacity-consultation/handoff.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/capacity-consultation/prior-artifacts.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/capacity-consultation/released-review-manifests.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/capacity-consultation/verification.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/check_preservation.py",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/ecoli-psepk-consultation/IPR009073.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/ecoli-psepk-consultation/IPR036386.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/ecoli-psepk-consultation/baseline.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/ecoli-psepk-consultation/check_preservation.py",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/ecoli-psepk-consultation/evidence.md",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/ecoli-psepk-consultation/ontology.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/ecoli-psepk-consultation/preservation-results.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/ecoli-psepk-consultation/response.md",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/ecoli-psepk-consultation/source-provenance.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/ecoli-psepk-consultation/validation-results.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/family-localization-provenance.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/focused-validation.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/preservation-results.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/retirement-semantics.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/root-adjudication.md",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/root-azovi-receipt.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/root-capacity-receipt.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/round1/root-ecoli-psepk-receipt.json",
    "analysis/module_audits/bacterial_isc_iron_sulfur_cluster_assembly/scope-and-evidence.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/README.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/baseline.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/capacity-consultation/README.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/capacity-consultation/cases.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/capacity-consultation/check_capacity.py",
    "analysis/module_audits/bacterial_lipoprotein_maturation/capacity-consultation/check_closure.py",
    "analysis/module_audits/bacterial_lipoprotein_maturation/capacity-consultation/checks.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/capacity-consultation/closure-results.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/capacity-consultation/final-input-hashes.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/capacity-consultation/handoff.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/capacity-consultation/member-closure.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/capacity-consultation/released-ecoli-bacsu-handoff.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/capacity-consultation/results.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/capacity-consultation/source-hashes.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/capacity-handoff-receipt.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/check_preservation.py",
    "analysis/module_audits/bacterial_lipoprotein_maturation/ecoli-bacsu-consultation/5azb-entity.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/ecoli-bacsu-consultation/baseline.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/ecoli-bacsu-consultation/check_preservation.py",
    "analysis/module_audits/bacterial_lipoprotein_maturation/ecoli-bacsu-consultation/evidence.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/ecoli-bacsu-consultation/handoff.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/ecoli-bacsu-consultation/lgt-sequence-check.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/ecoli-bacsu-consultation/ontology.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/ecoli-bacsu-consultation/preservation-results.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/ecoli-bacsu-consultation/validation-results.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/ecoli-bacsu-handoff-receipt.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/A0QZ13.txt",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/O53493.txt",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/PTHR30589-history.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/PTHR33695-history.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/PTHR38686-history.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/README.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/baseline.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/check_preservation.py",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/crosscheck.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/evidence.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/fusion-classification.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/gene-crosscheck.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/grounding.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/handoff.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/history-paths.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/lnt-final-schema.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/member-index-build.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/membership-results.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/official-labels.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/ontology.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/paint.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/preservation-results.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/references.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/ruff.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/schema.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/terms.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/tree-inspection.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/uniprot-provenance.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-consultation/validation-results.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/family-handoff-receipt.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/full-validation-proof.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/full-validation-round1-proof.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lhat-family-consultation/README.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lhat-family-consultation/baseline.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lhat-family-consultation/check_preservation.py",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lhat-family-consultation/handoff.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lhat-family-consultation/official-classification.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lhat-family-consultation/paint-fetch-receipt.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lhat-family-consultation/preservation.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lhat-family-consultation/validation.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lhat-family-handoff-receipt.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lhat-reuse-consultation/README.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lhat-reuse-consultation/check_preservation.py",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lhat-reuse-consultation/fresh-seed.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lhat-reuse-consultation/handoff.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lhat-reuse-consultation/pre-reuse.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lhat-reuse-consultation/preservation.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lhat-reuse-consultation/reuse-provenance.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lhat-reuse-consultation/validation.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lhat-reuse-handoff-receipt.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lit-consultation/README.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lit-consultation/bp-ancestors.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lit-consultation/check_preservation.py",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lit-consultation/comparator-goa-response-v2.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lit-consultation/comparator-goa-response.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lit-consultation/go-definitions.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lit-consultation/go-search.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lit-consultation/handoff.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lit-consultation/lit-comparators.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lit-consultation/lit-reviewed-comparators.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lit-consultation/new-source-baseline.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lit-consultation/preservation.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lit-consultation/primary-scope.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lit-consultation/seed-baseline.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lit-consultation/source-provenance.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lit-consultation/validation.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lit-handoff-receipt.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/BF9343_0945-uniprot-query.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/BT_4364-uniprot-query.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/GO0005886-quickgo.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/GO0016020-quickgo.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/GO0016410-quickgo.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/GO0016747-ancestors.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/GO0016747-quickgo.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/GO0042158-ancestors.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/GO0042158-quickgo.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/GO0140186-quickgo.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/IPR025178-official.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/IPR057436-official.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/P23930-lipoprotein-biosynthesis-comparator.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/Q88DN4-lipoprotein-biosynthesis-comparator.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/action-ledger.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/checks.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/evidence.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/gocam-comparator-check.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/handoff.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/official-query-provenance.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/ontology-classification-query-provenance.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/preservation.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/research-attempts.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/seed-baseline.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/term-query-provenance.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-consultation/verify.py",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnb-handoff-receipt.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/GO0005886-quickgo.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/GO0009897-quickgo.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/GO0016747-ancestors.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/GO0016747-quickgo.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/GO0042158-ancestors.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/GO0042158-quickgo.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/IPR056566-official.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/IPR056567-official.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/NP764138-uniparc-xrefs.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/NP764138-uniparc.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/NP765582-uniparc-xrefs.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/NP765582-uniparc.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/P23930-lipoprotein-biosynthesis-comparator.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/Q2FVF3-official.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/Q2G006-official.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/Q88DN4-lipoprotein-biosynthesis-comparator.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/SE0583-ncbi.gp",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/SE2027-ncbi.gp",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/acquisition-failures/SE_0583/SE_0583-ai-review.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/acquisition-failures/SE_0583/SE_0583-goa.tsv",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/acquisition-failures/SE_0583/SE_0583-uniprot.txt",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/acquisition-failures/SE_2027/SE_2027-ai-review.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/acquisition-failures/SE_2027/SE_2027-goa.tsv",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/acquisition-failures/SE_2027/SE_2027-uniprot.txt",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/action-ledger.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/checks.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/epidermidis-identity-bridge.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/evidence.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/gocam-check.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/handoff.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/pairing-evidence.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/preservation.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/research-attempts.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/seed-baseline.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/source-provenance.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/supplement-excerpts.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-consultation/verify.py",
    "analysis/module_audits/bacterial_lipoprotein_maturation/lnsab-handoff-receipt.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/main-integration-round1-proof.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/primary-reference-pass.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/psepk-consultation/README.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/psepk-consultation/RESULTS.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/psepk-consultation/baseline.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/psepk-consultation/candidate-identity.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/psepk-consultation/check_preservation.py",
    "analysis/module_audits/bacterial_lipoprotein_maturation/psepk-consultation/evidence.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/psepk-consultation/focused-checks.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/psepk-consultation/handoff.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/psepk-consultation/ontology-response.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/psepk-consultation/preservation-results.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/psepk-consultation/run_sequence_panel.py",
    "analysis/module_audits/bacterial_lipoprotein_maturation/psepk-consultation/sequence-panel.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/psepk-consultation/sequence-results.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/psepk-consultation/sequence-sensitivity.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/psepk-consultation/sequence_check.py",
    "analysis/module_audits/bacterial_lipoprotein_maturation/psepk-consultation/validation-results.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/psepk-handoff-receipt.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/reference-discovery.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/reference-review-pass.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/root-progress.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/baseline.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/capacity-consultation/README.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/capacity-consultation/additional-cases.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/capacity-consultation/check_capacity.py",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/capacity-consultation/check_closure.py",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/capacity-consultation/checks.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/capacity-consultation/closure-results.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/capacity-consultation/final-input-hashes.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/capacity-consultation/handoff.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/capacity-consultation/member-closure.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/capacity-consultation/project-deviation-provenance.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/capacity-consultation/results.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/capacity-consultation/source-hashes.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/capacity-consultation/validation/capacity.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/capacity-consultation/validation/closure.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/capacity-consultation/validation/format.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/capacity-consultation/validation/ruff.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/Q8VYF5.txt",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/Q9I6J8.txt",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/check_preservation.py",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/crosscheck.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/grounding.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/handoff.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/history.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/judgment-ledger.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/module-recommendations.yaml",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/ontology.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/pre-edit.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/preservation.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/recommendations.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/references.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/ruff.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/schema.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/seed-provenance.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/selector-schema.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/terms.log",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/family-consultation/validation.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/gene-consultation/README.md",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/gene-consultation/check_preservation.py",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/gene-consultation/handoff.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/gene-consultation/preservation.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/gene-consultation/quickgo-terms.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/gene-consultation/response.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/gene-consultation/validation.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/root-family-handoff-receipt.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/root-gene-handoff-receipt.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/round1/root-module-change.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/supplemental-validation-logs.json",
    "analysis/module_audits/bacterial_lipoprotein_maturation/validated-main-integration.json",
    "cache/go/terms.csv",
    "genes/AZOVI/fdx/fdx-ai-review.html",
    "genes/AZOVI/fdx/fdx-ai-review.yaml",
    "genes/AZOVI/fdx/fdx-goa.tsv",
    "genes/AZOVI/fdx/fdx-notes.md",
    "genes/AZOVI/fdx/fdx-uniprot.txt",
    "genes/AZOVI/hscA/hscA-ai-review.html",
    "genes/AZOVI/hscA/hscA-ai-review.yaml",
    "genes/AZOVI/hscA/hscA-goa.tsv",
    "genes/AZOVI/hscA/hscA-notes.md",
    "genes/AZOVI/hscA/hscA-uniprot.txt",
    "genes/AZOVI/hscB/hscB-ai-review.html",
    "genes/AZOVI/hscB/hscB-ai-review.yaml",
    "genes/AZOVI/hscB/hscB-goa.tsv",
    "genes/AZOVI/hscB/hscB-notes.md",
    "genes/AZOVI/hscB/hscB-uniprot.txt",
    "genes/AZOVI/iscA/iscA-ai-review.html",
    "genes/AZOVI/iscA/iscA-ai-review.yaml",
    "genes/AZOVI/iscA/iscA-goa.tsv",
    "genes/AZOVI/iscA/iscA-notes.md",
    "genes/AZOVI/iscA/iscA-uniprot.txt",
    "genes/AZOVI/iscS/iscS-ai-review.html",
    "genes/AZOVI/iscS/iscS-ai-review.yaml",
    "genes/AZOVI/iscS/iscS-goa.tsv",
    "genes/AZOVI/iscS/iscS-notes.md",
    "genes/AZOVI/iscS/iscS-uniprot.txt",
    "genes/AZOVI/iscU/iscU-ai-review.html",
    "genes/AZOVI/iscU/iscU-ai-review.yaml",
    "genes/AZOVI/iscU/iscU-goa.tsv",
    "genes/AZOVI/iscU/iscU-notes.md",
    "genes/AZOVI/iscU/iscU-uniprot.txt",
    "genes/BACCR/BC_1526/BC_1526-ai-review.html",
    "genes/BACCR/BC_1526/BC_1526-ai-review.yaml",
    "genes/BACCR/BC_1526/BC_1526-goa.tsv",
    "genes/BACCR/BC_1526/BC_1526-notes.md",
    "genes/BACCR/BC_1526/BC_1526-uniprot.txt",
    "genes/BACFN/BF9343_0945/BF9343_0945-ai-review.html",
    "genes/BACFN/BF9343_0945/BF9343_0945-ai-review.yaml",
    "genes/BACFN/BF9343_0945/BF9343_0945-goa.tsv",
    "genes/BACFN/BF9343_0945/BF9343_0945-notes.md",
    "genes/BACFN/BF9343_0945/BF9343_0945-uniprot.txt",
    "genes/BACSU/egsA/egsA-ai-review.html",
    "genes/BACSU/egsA/egsA-ai-review.yaml",
    "genes/BACSU/egsA/egsA-notes.md",
    "genes/BACSU/egsA/egsA-source-analysis/guldan-2010-assay-scope.md",
    "genes/BACSU/egsA/egsA-source-analysis/provenance.json",
    "genes/BACSU/lgt/lgt-ai-review.html",
    "genes/BACSU/lgt/lgt-ai-review.yaml",
    "genes/BACSU/lgt/lgt-notes.md",
    "genes/BACSU/lspA/lspA-ai-review.html",
    "genes/BACSU/lspA/lspA-ai-review.yaml",
    "genes/BACSU/lspA/lspA-notes.md",
    "genes/BACSU/pcrB/pcrB-ai-review.html",
    "genes/BACSU/pcrB/pcrB-ai-review.yaml",
    "genes/BACSU/pcrB/pcrB-notes.md",
    "genes/BACSU/ypjA/ypjA-ai-review.html",
    "genes/BACSU/ypjA/ypjA-ai-review.yaml",
    "genes/BACSU/ypjA/ypjA-goa.tsv",
    "genes/BACSU/ypjA/ypjA-notes.md",
    "genes/BACSU/ypjA/ypjA-uniprot.txt",
    "genes/BACSU/yvoF/yvoF-ai-review.html",
    "genes/BACSU/yvoF/yvoF-ai-review.yaml",
    "genes/BACSU/yvoF/yvoF-goa.tsv",
    "genes/BACSU/yvoF/yvoF-notes.md",
    "genes/BACSU/yvoF/yvoF-source-analysis/PMID27226549-reading.md",
    "genes/BACSU/yvoF/yvoF-source-analysis/provenance.json",
    "genes/BACSU/yvoF/yvoF-uniprot.txt",
    "genes/BACTN/BT_4364/BT_4364-ai-review.html",
    "genes/BACTN/BT_4364/BT_4364-ai-review.yaml",
    "genes/BACTN/BT_4364/BT_4364-goa.tsv",
    "genes/BACTN/BT_4364/BT_4364-notes.md",
    "genes/BACTN/BT_4364/BT_4364-uniprot.txt",
    "genes/ECOLI/fdx/fdx-ai-review.html",
    "genes/ECOLI/fdx/fdx-ai-review.yaml",
    "genes/ECOLI/fdx/fdx-notes.md",
    "genes/ECOLI/hscA/hscA-ai-review.html",
    "genes/ECOLI/hscA/hscA-ai-review.yaml",
    "genes/ECOLI/hscA/hscA-notes.md",
    "genes/ECOLI/hscB/hscB-ai-review.html",
    "genes/ECOLI/hscB/hscB-ai-review.yaml",
    "genes/ECOLI/hscB/hscB-notes.md",
    "genes/ECOLI/iscA/iscA-ai-review.html",
    "genes/ECOLI/iscA/iscA-ai-review.yaml",
    "genes/ECOLI/iscA/iscA-notes.md",
    "genes/ECOLI/iscS/iscS-ai-review.html",
    "genes/ECOLI/iscS/iscS-ai-review.yaml",
    "genes/ECOLI/iscS/iscS-notes.md",
    "genes/ECOLI/iscU/iscU-ai-review.html",
    "genes/ECOLI/iscU/iscU-ai-review.yaml",
    "genes/ECOLI/iscU/iscU-notes.md",
    "genes/ECOLI/lgt/lgt-ai-review.html",
    "genes/ECOLI/lgt/lgt-ai-review.yaml",
    "genes/ECOLI/lgt/lgt-notes.md",
    "genes/ECOLI/lnt/lnt-ai-review.html",
    "genes/ECOLI/lnt/lnt-ai-review.yaml",
    "genes/ECOLI/lnt/lnt-notes.md",
    "genes/ECOLI/lspA/lspA-ai-review.html",
    "genes/ECOLI/lspA/lspA-ai-review.yaml",
    "genes/ECOLI/lspA/lspA-notes.md",
    "genes/FLAJ1/Fjoh_1584/Fjoh_1584-ai-review.html",
    "genes/FLAJ1/Fjoh_1584/Fjoh_1584-ai-review.yaml",
    "genes/FLAJ1/Fjoh_1584/Fjoh_1584-goa.tsv",
    "genes/FLAJ1/Fjoh_1584/Fjoh_1584-notes.md",
    "genes/FLAJ1/Fjoh_1584/Fjoh_1584-uniprot.txt",
    "genes/GEOKA/pcrB/pcrB-ai-review.html",
    "genes/GEOKA/pcrB/pcrB-ai-review.yaml",
    "genes/GEOKA/pcrB/pcrB-goa.tsv",
    "genes/GEOKA/pcrB/pcrB-notes.md",
    "genes/GEOKA/pcrB/pcrB-uniprot.txt",
    "genes/PSEPK/fdx/fdx-ai-review.html",
    "genes/PSEPK/fdx/fdx-ai-review.yaml",
    "genes/PSEPK/fdx/fdx-notes.md",
    "genes/PSEPK/hscA/hscA-ai-review.html",
    "genes/PSEPK/hscA/hscA-ai-review.yaml",
    "genes/PSEPK/hscA/hscA-notes.md",
    "genes/PSEPK/hscB/hscB-ai-review.html",
    "genes/PSEPK/hscB/hscB-ai-review.yaml",
    "genes/PSEPK/hscB/hscB-notes.md",
    "genes/PSEPK/iscA/iscA-ai-review.html",
    "genes/PSEPK/iscA/iscA-ai-review.yaml",
    "genes/PSEPK/iscA/iscA-notes.md",
    "genes/PSEPK/iscS/iscS-ai-review.html",
    "genes/PSEPK/iscS/iscS-ai-review.yaml",
    "genes/PSEPK/iscS/iscS-notes.md",
    "genes/PSEPK/iscU/iscU-ai-review.html",
    "genes/PSEPK/iscU/iscU-ai-review.yaml",
    "genes/PSEPK/iscU/iscU-notes.md",
    "genes/PSEPK/lgt/lgt-ai-review.html",
    "genes/PSEPK/lgt/lgt-ai-review.yaml",
    "genes/PSEPK/lgt/lgt-notes.md",
    "genes/PSEPK/lnt/lnt-ai-review.html",
    "genes/PSEPK/lnt/lnt-ai-review.yaml",
    "genes/PSEPK/lnt/lnt-notes.md",
    "genes/PSEPK/lspA/lspA-ai-review.html",
    "genes/PSEPK/lspA/lspA-ai-review.yaml",
    "genes/PSEPK/lspA/lspA-notes.md",
    "genes/STAA1/pcrB/pcrB-ai-review.html",
    "genes/STAA1/pcrB/pcrB-ai-review.yaml",
    "genes/STAA1/pcrB/pcrB-goa.tsv",
    "genes/STAA1/pcrB/pcrB-notes.md",
    "genes/STAA1/pcrB/pcrB-uniprot.txt",
    "genes/STAA8/SAOUHSC_00822/SAOUHSC_00822-ai-review.html",
    "genes/STAA8/SAOUHSC_00822/SAOUHSC_00822-ai-review.yaml",
    "genes/STAA8/SAOUHSC_00822/SAOUHSC_00822-goa.tsv",
    "genes/STAA8/SAOUHSC_00822/SAOUHSC_00822-notes.md",
    "genes/STAA8/SAOUHSC_00822/SAOUHSC_00822-uniprot.txt",
    "genes/STAA8/SAOUHSC_02761/SAOUHSC_02761-ai-review.html",
    "genes/STAA8/SAOUHSC_02761/SAOUHSC_02761-ai-review.yaml",
    "genes/STAA8/SAOUHSC_02761/SAOUHSC_02761-goa.tsv",
    "genes/STAA8/SAOUHSC_02761/SAOUHSC_02761-notes.md",
    "genes/STAA8/SAOUHSC_02761/SAOUHSC_02761-uniprot.txt",
    "genes/human/GMNN/GMNN-ai-review.html",
    "genes/human/GMNN/GMNN-ai-review.yaml",
    "genes/human/GMNN/GMNN-evidence.json",
    "genes/human/GMNN/GMNN-goa.tsv",
    "genes/human/GMNN/GMNN-notes.md",
    "genes/human/GMNN/GMNN-source-guide.md",
    "genes/human/GMNN/GMNN-source-use.json",
    "genes/human/GMNN/GMNN-uniprot.txt",
    "genes/human/GRIA1/GRIA1-ai-review.html",
    "genes/human/GRIA1/GRIA1-ai-review.yaml",
    "genes/human/GRIA1/GRIA1-evidence.json",
    "genes/human/GRIA1/GRIA1-goa.tsv",
    "genes/human/GRIA1/GRIA1-notes.md",
    "genes/human/GRIA1/GRIA1-phylogeny.json",
    "genes/human/GRIA1/GRIA1-source-guide.md",
    "genes/human/GRIA1/GRIA1-source-use.json",
    "genes/human/GRIA1/GRIA1-uniprot.txt",
    "genes/human/GRIA4/GRIA4-ai-review.html",
    "genes/human/GRIA4/GRIA4-ai-review.yaml",
    "genes/human/GRIA4/GRIA4-evidence.json",
    "genes/human/GRIA4/GRIA4-goa.tsv",
    "genes/human/GRIA4/GRIA4-notes.md",
    "genes/human/GRIA4/GRIA4-source-guide.md",
    "genes/human/GRIA4/GRIA4-source-use.json",
    "genes/human/GRIA4/GRIA4-uniprot.txt",
    "genes/human/GRXCR2/GRXCR2-ai-review.html",
    "genes/human/GRXCR2/GRXCR2-ai-review.yaml",
    "genes/human/GRXCR2/GRXCR2-goa.tsv",
    "genes/human/GRXCR2/GRXCR2-notes.md",
    "genes/human/GRXCR2/GRXCR2-source-evidence.json",
    "genes/human/GRXCR2/GRXCR2-source-guide.md",
    "genes/human/GRXCR2/GRXCR2-uniprot.txt",
    "genes/human/GSX2/GSX2-ai-review.html",
    "genes/human/GSX2/GSX2-ai-review.yaml",
    "genes/human/GSX2/GSX2-evidence.json",
    "genes/human/GSX2/GSX2-goa.tsv",
    "genes/human/GSX2/GSX2-notes.md",
    "genes/human/GSX2/GSX2-source-evidence.json",
    "genes/human/GSX2/GSX2-source-guide.md",
    "genes/human/GSX2/GSX2-source-use.json",
    "genes/human/GSX2/GSX2-uniprot.txt",
    "history/genes/AZOVI/fdx/2026-11-07T042140Z-codex-fb9a9e.yaml",
    "history/genes/AZOVI/fdx/2026-11-07T062810Z-codex-1337b6.yaml",
    "history/genes/AZOVI/hscA/2026-11-07T042117Z-codex-c2b672.yaml",
    "history/genes/AZOVI/hscA/2026-11-07T062811Z-codex-803d32.yaml",
    "history/genes/AZOVI/hscB/2026-11-07T042129Z-codex-e2a94f.yaml",
    "history/genes/AZOVI/hscB/2026-11-07T062811Z-codex-21a0a9.yaml",
    "history/genes/AZOVI/iscA/2026-11-07T042105Z-codex-1e308d.yaml",
    "history/genes/AZOVI/iscA/2026-11-07T062811Z-codex-5e9c3f.yaml",
    "history/genes/AZOVI/iscS/2026-11-07T042043Z-codex-f2584d.yaml",
    "history/genes/AZOVI/iscS/2026-11-07T062812Z-codex-6c6862.yaml",
    "history/genes/AZOVI/iscU/2026-11-07T042054Z-codex-e402bd.yaml",
    "history/genes/AZOVI/iscU/2026-11-07T062812Z-codex-ed0a07.yaml",
    "history/genes/BACCR/BC_1526/2026-11-07T063801Z-codex-0bba75.yaml",
    "history/genes/BACCR/BC_1526/2026-11-07T082547Z-codex-ef37da.yaml",
    "history/genes/BACFN/BF9343_0945/2026-11-07T062213Z-codex-d77fc5.yaml",
    "history/genes/BACFN/BF9343_0945/2026-11-07T082525Z-codex-c61d18.yaml",
    "history/genes/BACSU/egsA/2026-11-07T030311Z-codex-f14412.yaml",
    "history/genes/BACSU/egsA/2026-11-07T043711Z-codex-8e442e.yaml",
    "history/genes/BACSU/lgt/2026-11-07T061851Z-codex-aa4d6f.yaml",
    "history/genes/BACSU/lspA/2026-11-07T061851Z-codex-77b420.yaml",
    "history/genes/BACSU/lspA/2026-11-07T082512Z-codex-c1a337.yaml",
    "history/genes/BACSU/pcrB/2026-11-07T030312Z-codex-824df0.yaml",
    "history/genes/BACSU/pcrB/2026-11-07T044118Z-codex-d91068.yaml",
    "history/genes/BACSU/ypjA/2026-11-07T030131Z-codex-bb2277.yaml",
    "history/genes/BACSU/ypjA/2026-11-07T064144Z-codex-b6790d.yaml",
    "history/genes/BACSU/yvoF/2026-11-07T030131Z-codex-e05c74.yaml",
    "history/genes/BACTN/BT_4364/2026-11-07T062215Z-codex-29be3a.yaml",
    "history/genes/BACTN/BT_4364/2026-11-07T082535Z-codex-133d47.yaml",
    "history/genes/ECOLI/fdx/2026-11-07T042244Z-codex-93665a.yaml",
    "history/genes/ECOLI/hscA/2026-11-07T042243Z-codex-a5f72f.yaml",
    "history/genes/ECOLI/hscA/2026-11-07T062628Z-codex-013459.yaml",
    "history/genes/ECOLI/hscB/2026-11-07T042241Z-codex-f6e90f.yaml",
    "history/genes/ECOLI/hscB/2026-11-07T062628Z-codex-941b4b.yaml",
    "history/genes/ECOLI/iscA/2026-11-07T042240Z-codex-5e4bcb.yaml",
    "history/genes/ECOLI/iscS/2026-11-07T042236Z-codex-34c285.yaml",
    "history/genes/ECOLI/iscS/2026-11-07T062628Z-codex-38bb48.yaml",
    "history/genes/ECOLI/iscU/2026-11-07T042238Z-codex-a8459f.yaml",
    "history/genes/ECOLI/lgt/2026-11-07T061850Z-codex-d63fd7.yaml",
    "history/genes/ECOLI/lgt/2026-11-07T082435Z-codex-62d199.yaml",
    "history/genes/ECOLI/lnt/2026-11-07T061851Z-codex-24131c.yaml",
    "history/genes/ECOLI/lspA/2026-11-07T061851Z-codex-63ffd5.yaml",
    "history/genes/ECOLI/lspA/2026-11-07T082458Z-codex-1e3780.yaml",
    "history/genes/FLAJ1/Fjoh_1584/2026-11-07T030115Z-codex-6080ab.yaml",
    "history/genes/FLAJ1/Fjoh_1584/2026-11-07T044118Z-codex-05f215.yaml",
    "history/genes/GEOKA/pcrB/2026-11-07T030114Z-codex-2cdcda.yaml",
    "history/genes/GEOKA/pcrB/2026-11-07T043647Z-codex-27e359.yaml",
    "history/genes/PSEPK/fdx/2026-11-07T041447Z-codex-88f310.yaml",
    "history/genes/PSEPK/hscA/2026-11-07T041446Z-codex-d9357a.yaml",
    "history/genes/PSEPK/hscA/2026-11-07T062629Z-codex-2ed791.yaml",
    "history/genes/PSEPK/hscB/2026-11-07T041445Z-codex-9d0df5.yaml",
    "history/genes/PSEPK/hscB/2026-11-07T062629Z-codex-1d7934.yaml",
    "history/genes/PSEPK/iscA/2026-11-07T041444Z-codex-87b348.yaml",
    "history/genes/PSEPK/iscS/2026-11-07T041441Z-codex-b9d000.yaml",
    "history/genes/PSEPK/iscU/2026-11-07T041443Z-codex-12f5ac.yaml",
    "history/genes/PSEPK/lgt/2026-11-07T061455Z-claude-code-c1d808.yaml",
    "history/genes/PSEPK/lnt/2026-11-07T061455Z-claude-code-6710d3.yaml",
    "history/genes/PSEPK/lspA/2026-11-07T061455Z-claude-code-4bbad7.yaml",
    "history/genes/PSEPK/lspA/2026-11-07T082447Z-codex-0f41e5.yaml",
    "history/genes/STAA1/pcrB/2026-11-07T030114Z-codex-d35d50.yaml",
    "history/genes/STAA1/pcrB/2026-11-07T043700Z-codex-be07b8.yaml",
    "history/genes/STAA8/SAOUHSC_00822/2026-11-07T063850Z-codex-6902d6.yaml",
    "history/genes/STAA8/SAOUHSC_00822/2026-11-07T082601Z-codex-ce9fab.yaml",
    "history/genes/STAA8/SAOUHSC_02761/2026-11-07T063852Z-codex-dd8dd9.yaml",
    "history/genes/STAA8/SAOUHSC_02761/2026-11-07T082612Z-codex-fe6d11.yaml",
    "history/genes/human/GMNN/2026-11-07T015613Z-codex-46856b.yaml",
    "history/genes/human/GMNN/2026-11-07T023345Z-codex-6760f9.yaml",
    "history/genes/human/GMNN/2026-11-07T034129Z-codex-de2b0f.yaml",
    "history/genes/human/GMNN/2026-11-07T041830Z-codex-2dd358.yaml",
    "history/genes/human/GMNN/2026-11-07T052512Z-codex-5141af.yaml",
    "history/genes/human/GMNN/2026-11-07T062200Z-codex-217925.yaml",
    "history/genes/human/GMNN/2026-11-07T065229Z-codex-be78a6.yaml",
    "history/genes/human/GRIA1/2026-11-07T055545Z-codex-1132f0.yaml",
    "history/genes/human/GRIA1/2026-11-07T071610Z-codex-cd6a4e.yaml",
    "history/genes/human/GRIA1/2026-11-07T074951Z-codex-ca2e17.yaml",
    "history/genes/human/GRIA4/2026-11-07T064757Z-codex-c611dd.yaml",
    "history/genes/human/GRIA4/2026-11-07T073924Z-codex-9edcea.yaml",
    "history/genes/human/GRIA4/2026-11-07T082201Z-codex-5d250e.yaml",
    "history/genes/human/GRXCR2/2026-11-07T072643Z-codex-dd63c8.yaml",
    "history/genes/human/GRXCR2/2026-11-07T082430Z-codex-7b9170.yaml",
    "history/genes/human/GSX2/2026-11-07T090638Z-codex-fec7c8.yaml",
    "history/genes/human/GSX2/2026-11-07T114051Z-codex-00e129.yaml",
    "history/modules/bacterial_heptaprenylglyceryl_ether_lipid/2026-11-07T030341Z-codex-505d33.yaml",
    "history/modules/bacterial_isc_iron_sulfur_cluster_assembly/2026-11-07T041255Z-codex-a6180f.yaml",
    "history/modules/bacterial_isc_iron_sulfur_cluster_assembly/2026-11-07T043325Z-codex-ccbaad.yaml",
    "history/modules/bacterial_isc_iron_sulfur_cluster_assembly/2026-11-07T062707Z-codex-4ead09.yaml",
    "history/modules/bacterial_lipoprotein_maturation/2026-11-07T064049Z-codex-1c32c1.yaml",
    "history/modules/bacterial_lipoprotein_maturation/2026-11-07T065326Z-codex-20519f.yaml",
    "history/modules/bacterial_lipoprotein_maturation/2026-11-07T070032Z-codex-39fb34.yaml",
    "history/modules/bacterial_lipoprotein_maturation/2026-11-07T082537Z-codex-c96453.yaml",
    "history/other/PTHR10093/2026-11-07T042216Z-codex-a02321.yaml",
    "history/other/PTHR19375/2026-11-07T042217Z-codex-a0a515.yaml",
    "history/other/PTHR19375/2026-11-07T062631Z-codex-16f40f.yaml",
    "history/other/PTHR19375/2026-11-07T063602Z-codex-cf0912.yaml",
    "history/other/PTHR30589/2026-11-07T064233Z-codex-efe1e4.yaml",
    "history/other/PTHR33695/2026-11-07T064235Z-codex-1effd0.yaml",
    "history/other/PTHR38686/2026-11-07T064236Z-codex-295011.yaml",
    "history/other/PTHR38686/2026-11-07T082211Z-codex-3178a1.yaml",
    "history/other/PTHR40042/2026-11-07T064920Z-codex-a80817.yaml",
    "history/projects/CLINGEN_MENDELIAN/2026-11-07T093537Z-codex-01121a.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T030933Z-codex-3e6e3b.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T040908Z-codex-81c8d6.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T040948Z-codex-7aaa08.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T041309Z-codex-f837d5.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T041443Z-codex-239e8d.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T041544Z-codex-e367f7.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T041623Z-codex-19b258.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T042804Z-codex-2c3a1d.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T043049Z-codex-31f6f3.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T044240Z-codex-88ee96.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T044827Z-codex-9b6584.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T053542Z-codex-58240e.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T053656Z-codex-491faa.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T053915Z-codex-4f0256.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T053916Z-codex-74cc54.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T054440Z-codex-c52121.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T054511Z-codex-3008b9.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T062742Z-codex-955cf0.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T062906Z-codex-08f4cd.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T063601Z-codex-952bf8.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T065327Z-codex-8dcd27.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T070033Z-codex-20fd4d.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T072923Z-codex-78e98d.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T073025Z-codex-51c08e.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T073100Z-codex-2586ae.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T073154Z-codex-f4f19d.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T075258Z-codex-5471e1.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T075441Z-codex-0600f4.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T075708Z-codex-e009bf.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T080036Z-codex-ee2a09.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T080228Z-codex-dd9fd2.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T083656Z-codex-5bb674.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T092542Z-codex-df63b0.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T092614Z-codex-2288ec.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T092643Z-codex-63c5f1.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T095152Z-codex-420c7a.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T095326Z-codex-e44dc7.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T115644Z-codex-9071a4.yaml",
    "history/projects/MODULE_TAXON_AUDIT/2026-11-07T115826Z-codex-675729.yaml",
    "interpro/panther/PTHR10093/PTHR10093-review.yaml",
    "interpro/panther/PTHR19375/PTHR19375-review.yaml",
    "interpro/panther/PTHR30589/PTHR30589-review.yaml",
    "interpro/panther/PTHR33695/PTHR33695-review.yaml",
    "interpro/panther/PTHR38686/PTHR38686-review.yaml",
    "interpro/panther/PTHR40042/PTHR40042-entries.csv",
    "interpro/panther/PTHR40042/PTHR40042-metadata.yaml",
    "interpro/panther/PTHR40042/PTHR40042-review.yaml",
    "interpro/panther/PTHR46926/PTHR46926-entries.csv",
    "interpro/panther/PTHR46926/PTHR46926-metadata.yaml",
    "interpro/panther/PTHR46926/PTHR46926-paint.tsv",
    "interpro/panther/PTHR47421/PTHR47421-entries.csv",
    "interpro/panther/PTHR47421/PTHR47421-metadata.yaml",
    "interpro/panther/PTHR47421/PTHR47421-paint.tsv",
    "modules/bacterial_heptaprenylglyceryl_ether_lipid-notes.md",
    "modules/bacterial_heptaprenylglyceryl_ether_lipid.yaml",
    "modules/bacterial_isc_iron_sulfur_cluster_assembly.yaml",
    "modules/bacterial_lipoprotein_maturation-notes.md",
    "modules/bacterial_lipoprotein_maturation.yaml",
    "pages/modules/bacterial_heptaprenylglyceryl_ether_lipid.html",
    "pages/modules/bacterial_isc_iron_sulfur_cluster_assembly.html",
    "pages/modules/bacterial_lipoprotein_maturation.html",
    "pages/projects/CLINGEN_MENDELIAN/publication-queue.json",
    "pages/projects/MODULE_TAXON_AUDIT.html",
    "pages/projects/MODULE_TAXON_AUDIT/inventory.json",
    "pages/projects/MODULE_TAXON_AUDIT/proofs/pr2143-merged-content.json",
    "pages/projects/MODULE_TAXON_AUDIT/proofs/pr6105-merged-content.json",
    "pages/projects/MODULE_TAXON_AUDIT/proofs/pr6184-merged-content.json",
    "projects/CLINGEN_MENDELIAN.md",
    "projects/CLINGEN_MENDELIAN/publication-queue.json",
    "projects/CLINGEN_MENDELIAN/review-progress.md",
    "projects/MODULE_TAXON_AUDIT.md",
    "projects/MODULE_TAXON_AUDIT/inventory.json",
    "projects/MODULE_TAXON_AUDIT/proofs/pr2143-merged-content.json",
    "projects/MODULE_TAXON_AUDIT/proofs/pr6105-merged-content.json",
    "projects/MODULE_TAXON_AUDIT/proofs/pr6184-merged-content.json",
    "publications/PMID_10542283.md",
    "publications/PMID_10891064.md",
    "publications/PMID_11431570.md",
    "publications/PMID_12670305.md",
    "publications/PMID_1311100.md",
    "publications/PMID_1320959.md",
    "publications/PMID_15260975.md",
    "publications/PMID_15313623.md",
    "publications/PMID_15378034.md",
    "publications/PMID_15601948.md",
    "publications/PMID_16165131.md",
    "publications/PMID_1652753.md",
    "publications/PMID_16730357.md",
    "publications/PMID_16936042.md",
    "publications/PMID_16964969.md",
    "publications/PMID_17237162.md",
    "publications/PMID_17416655.md",
    "publications/PMID_18562278.md",
    "publications/PMID_20129055.md",
    "publications/PMID_20434989.md",
    "publications/PMID_22615398.md",
    "publications/PMID_22623657.md",
    "publications/PMID_22645314.md",
    "publications/PMID_22720072.md",
    "publications/PMID_22782893.md",
    "publications/PMID_23739980.md",
    "publications/PMID_24619944.md",
    "publications/PMID_25447670.md",
    "publications/PMID_25510311.md",
    "publications/PMID_25688831.md",
    "publications/PMID_26560204.md",
    "publications/PMID_26637980.md",
    "publications/PMID_26719327.md",
    "publications/PMID_26912896.md",
    "publications/PMID_28320885.md",
    "publications/PMID_28628100.md",
    "publications/PMID_28814342.md",
    "publications/PMID_29220673.md",
    "publications/PMID_29292548.md",
    "publications/PMID_30380417.md",
    "publications/PMID_30900542.md",
    "publications/PMID_31412107.md",
    "publications/PMID_31651360.md",
    "publications/PMID_32131593.md",
    "publications/PMID_32408945.md",
    "publications/PMID_32471867.md",
    "publications/PMID_32723923.md",
    "publications/PMID_33712431.md",
    "publications/PMID_34046426.md",
    "publications/PMID_34253723.md",
    "publications/PMID_34781750.md",
    "publications/PMID_35675825.md",
    "publications/PMID_35976526.md",
    "publications/PMID_36605734.md",
    "publications/PMID_36941124.md",
    "publications/PMID_37455337.md",
    "publications/PMID_38452854.md",
    "publications/PMID_38762171.md",
    "publications/PMID_39119454.md",
    "publications/PMID_39882631.md",
    "publications/PMID_41512913.md",
    "publications/PMID_41970532.md",
    "publications/PMID_42023066.md",
    "publications/PMID_42126242.md",
    "publications/PMID_42580408.md",
    "publications/PMID_42949064.md",
    "publications/PMID_8589990.md",
    "publications/PMID_8824304.md",
    "publications/PMID_9582371.md",
    "publications/PMID_9635433.md",
    "publications/PMID_9707441.md",
    "publications/PMID_9852006.md",
    "reactome/R-HSA-399711.md",
    "reactome/R-HSA-399712.md",
    "reactome/R-HSA-420975.md",
    "reactome/R-HSA-420977.md",
    "reactome/R-HSA-420980.md",
    "reactome/R-HSA-438037.md",
    "reactome/R-HSA-5694442.md"
  ],
  "validation_implementation_unchanged": true
}
